BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00006596
         (304 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI27249.3| unnamed protein product [Vitis vinifera]              129   3e-28
ref|XP_002274884.1| PREDICTED: pentatricopeptide repeat-containi...   129   3e-28
ref|XP_002316102.1| predicted protein [Populus trichocarpa] gi|2...   127   9e-28
ref|XP_003529461.1| PREDICTED: pentatricopeptide repeat-containi...   125   4e-27
ref|XP_003607763.1| Pentatricopeptide repeat-containing protein ...   123   2e-26

>emb|CBI27249.3| unnamed protein product [Vitis vinifera]
          Length = 707

 Score =  129 bits (323), Expect = 3e-28
 Identities = 61/100 (61%), Positives = 72/100 (72%)
 Frame = +1

Query: 1   YVCMVDXXXXXXXXXXXXXFIEGMPVQANAGVWGALLHGCRLHSRSDLGEIAVRKMIELQ 180
           Y CMVD             FIE +P+Q +  + GA LHGCRLHSR DLGE+AVR+M+EL 
Sbjct: 581 YACMVDLLARAGRLEEALDFIEKIPIQPDVSLLGAFLHGCRLHSRFDLGEVAVRRMLELH 640

Query: 181 PDDAGYYVLMSNLYASDGRWEQVNQMRELMKQQGLSKSPG 300
           PD A YYVLMSNLYAS+GRW Q NQ+ ELMKQ+GL+K PG
Sbjct: 641 PDKACYYVLMSNLYASEGRWSQANQVMELMKQRGLAKLPG 680


>ref|XP_002274884.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03380,
           mitochondrial [Vitis vinifera]
           gi|147818711|emb|CAN65040.1| hypothetical protein
           VITISV_009460 [Vitis vinifera]
          Length = 700

 Score =  129 bits (323), Expect = 3e-28
 Identities = 61/100 (61%), Positives = 72/100 (72%)
 Frame = +1

Query: 1   YVCMVDXXXXXXXXXXXXXFIEGMPVQANAGVWGALLHGCRLHSRSDLGEIAVRKMIELQ 180
           Y CMVD             FIE +P+Q +  + GA LHGCRLHSR DLGE+AVR+M+EL 
Sbjct: 580 YACMVDLLARAGRLEEALDFIEKIPIQPDVSLLGAFLHGCRLHSRFDLGEVAVRRMLELH 639

Query: 181 PDDAGYYVLMSNLYASDGRWEQVNQMRELMKQQGLSKSPG 300
           PD A YYVLMSNLYAS+GRW Q NQ+ ELMKQ+GL+K PG
Sbjct: 640 PDKACYYVLMSNLYASEGRWSQANQVMELMKQRGLAKLPG 679


>ref|XP_002316102.1| predicted protein [Populus trichocarpa] gi|222865142|gb|EEF02273.1|
           predicted protein [Populus trichocarpa]
          Length = 665

 Score =  127 bits (319), Expect = 9e-28
 Identities = 59/101 (58%), Positives = 72/101 (71%)
 Frame = +1

Query: 1   YVCMVDXXXXXXXXXXXXXFIEGMPVQANAGVWGALLHGCRLHSRSDLGEIAVRKMIELQ 180
           Y CMVD             FI+ MPVQ +  ++GA LHGC LHSR DLGE+A+++M+EL 
Sbjct: 545 YTCMVDLLARAGRLKEALDFIQKMPVQPDVSLFGAFLHGCGLHSRFDLGELAIKRMLELH 604

Query: 181 PDDAGYYVLMSNLYASDGRWEQVNQMRELMKQQGLSKSPGC 303
           P DA YYVLM NLYASD RW +V Q+RELMKQ+GL K+PGC
Sbjct: 605 PGDACYYVLMCNLYASDARWSKVKQVRELMKQRGLMKTPGC 645


>ref|XP_003529461.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03380,
           mitochondrial-like [Glycine max]
          Length = 699

 Score =  125 bits (314), Expect = 4e-27
 Identities = 59/101 (58%), Positives = 72/101 (71%)
 Frame = +1

Query: 1   YVCMVDXXXXXXXXXXXXXFIEGMPVQANAGVWGALLHGCRLHSRSDLGEIAVRKMIELQ 180
           Y CMVD             FIE MPVQ +  V+GA LHGC LHSR +LG  A++KM+EL 
Sbjct: 580 YACMVDMLARAGNLEEALDFIERMPVQPSVSVFGAFLHGCGLHSRFELGGAAIKKMLELH 639

Query: 181 PDDAGYYVLMSNLYASDGRWEQVNQMRELMKQQGLSKSPGC 303
           PD+A YYVL+SNLYASDGRW  V Q+RE++KQ+GL+K PGC
Sbjct: 640 PDEACYYVLVSNLYASDGRWGMVKQVREMIKQRGLNKVPGC 680


>ref|XP_003607763.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355508818|gb|AES89960.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 871

 Score =  123 bits (308), Expect = 2e-26
 Identities = 57/100 (57%), Positives = 70/100 (70%)
 Frame = +1

Query: 1   YVCMVDXXXXXXXXXXXXXFIEGMPVQANAGVWGALLHGCRLHSRSDLGEIAVRKMIELQ 180
           Y CMVD             FI+ MPVQ   GV+GA LHGC LHS  D GE+A+R+M+EL 
Sbjct: 583 YACMVDLLARAGNLQEALDFIDKMPVQPGVGVFGAFLHGCGLHSNFDFGEVAIRRMLELH 642

Query: 181 PDDAGYYVLMSNLYASDGRWEQVNQMRELMKQQGLSKSPG 300
           PD A YYVL+SNLYASDGRW  V ++RE++KQ+GL+K PG
Sbjct: 643 PDQACYYVLISNLYASDGRWGMVKEVREMIKQRGLNKVPG 682