BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00006517
         (259 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD21778.1| putative non-LTR retroelement reverse transcripta...    94   1e-17
gb|AAF69169.1|AC007915_21 F27F5.21 [Arabidopsis thaliana]              92   6e-17
gb|AAB48346.1| reverse transcriptase, partial [Arabidopsis thali...    91   1e-16
ref|XP_002454941.1| hypothetical protein SORBIDRAFT_03g001780 [S...    91   1e-16
gb|AAG51783.1|AC079679_3 reverse transcriptase, putative; 16838-...    89   5e-16

>gb|AAD21778.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1715

 Score = 94.0 bits (232), Expect = 1e-17
 Identities = 37/85 (43%), Positives = 60/85 (70%)
 Frame = +1

Query: 4    EIFHQXXXXXXXXXGWMAIKLDMAKAFDRLEWSFIDNIFMKLDFCNKWRELIKTCISTVA 183
            E+ H          G++A+K D++KA+DR+EW+F++ + ++L F  +W + I TC+++V+
Sbjct: 917  ELLHSLKSRRECQSGYVAVKTDISKAYDRVEWNFLEKVMIQLGFAPRWVKWIMTCVTSVS 976

Query: 184  YNALLNGSPLSKVFPLKGIRQGDPL 258
            Y  L+NGSP  K+FP +GIRQGDPL
Sbjct: 977  YEVLINGSPYGKIFPSRGIRQGDPL 1001


>gb|AAF69169.1|AC007915_21 F27F5.21 [Arabidopsis thaliana]
          Length = 1023

 Score = 91.7 bits (226), Expect = 6e-17
 Identities = 41/85 (48%), Positives = 54/85 (63%)
 Frame = +1

Query: 4   EIFHQXXXXXXXXXGWMAIKLDMAKAFDRLEWSFIDNIFMKLDFCNKWRELIKTCISTVA 183
           E+FH           +MAIK DM+KA+DR+EW+FI+ +  K+ FC KW   I  CI+TV 
Sbjct: 405 EMFHGLRTNPSCKGKFMAIKTDMSKAYDRVEWNFIEELLKKMGFCEKWISWIMWCITTVQ 464

Query: 184 YNALLNGSPLSKVFPLKGIRQGDPL 258
           Y  LLNG P   + P +G+RQGDPL
Sbjct: 465 YRVLLNGQPRGLIVPKRGLRQGDPL 489


>gb|AAB48346.1| reverse transcriptase, partial [Arabidopsis thaliana]
          Length = 199

 Score = 90.5 bits (223), Expect = 1e-16
 Identities = 36/85 (42%), Positives = 59/85 (69%)
 Frame = +1

Query: 4   EIFHQXXXXXXXXXGWMAIKLDMAKAFDRLEWSFIDNIFMKLDFCNKWRELIKTCISTVA 183
           E+ H          G++A+K D++KA+DR+EW+F++ + ++L F  +W + I TC+++V+
Sbjct: 111 ELLHSLKSRRECQSGYVAVKTDISKAYDRVEWNFLEKVMIQLGFAPRWVKWIMTCVTSVS 170

Query: 184 YNALLNGSPLSKVFPLKGIRQGDPL 258
           Y  L+NGSP  K+FP +GIRQG PL
Sbjct: 171 YEVLINGSPYGKIFPSRGIRQGYPL 195


>ref|XP_002454941.1| hypothetical protein SORBIDRAFT_03g001780 [Sorghum bicolor]
           gi|241926916|gb|EES00061.1| hypothetical protein
           SORBIDRAFT_03g001780 [Sorghum bicolor]
          Length = 631

 Score = 90.5 bits (223), Expect = 1e-16
 Identities = 41/85 (48%), Positives = 55/85 (64%)
 Frame = +1

Query: 4   EIFHQXXXXXXXXXGWMAIKLDMAKAFDRLEWSFIDNIFMKLDFCNKWRELIKTCISTVA 183
           EI H          G  AIKLDM+KA+DR+EWSF++N+  K+ F  KW +LI  C++TV 
Sbjct: 136 EIVHHLKSIKKGAGGLAAIKLDMSKAYDRVEWSFLENMMRKMGFDEKWVQLIMKCVTTVT 195

Query: 184 YNALLNGSPLSKVFPLKGIRQGDPL 258
           Y   +N S   K+FP +G+RQGDPL
Sbjct: 196 YKIKVNDSYTQKIFPQRGLRQGDPL 220


>gb|AAG51783.1|AC079679_3 reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
          Length = 1142

 Score = 88.6 bits (218), Expect = 5e-16
 Identities = 39/85 (45%), Positives = 54/85 (63%)
 Frame = +1

Query: 4   EIFHQXXXXXXXXXGWMAIKLDMAKAFDRLEWSFIDNIFMKLDFCNKWRELIKTCISTVA 183
           E+FH           +MAIK DM+KA+D++EW+FI+ +  K+ FC KW   I  CI+TV 
Sbjct: 339 EMFHGLRTNSSCKDKFMAIKTDMSKAYDQVEWNFIEALLRKMGFCEKWISWIMWCITTVQ 398

Query: 184 YNALLNGSPLSKVFPLKGIRQGDPL 258
           Y  L+NG P   + P +G+RQGDPL
Sbjct: 399 YKVLINGQPKGLIIPERGLRQGDPL 423