BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00006508
         (1086 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003525721.1| PREDICTED: replication factor C subunit 2-li...   602   e-170
ref|XP_002509739.1| replication factor C / DNA polymerase III ga...   601   e-169
ref|XP_003549857.1| PREDICTED: replication factor C subunit 2-li...   598   e-169
ref|XP_004147970.1| PREDICTED: replication factor C subunit 2-li...   597   e-168
ref|XP_002886430.1| hypothetical protein ARALYDRAFT_475032 [Arab...   594   e-167

>ref|XP_003525721.1| PREDICTED: replication factor C subunit 2-like [Glycine max]
          Length = 331

 Score =  602 bits (1551), Expect = e-170
 Identities = 297/322 (92%), Positives = 317/322 (98%), Gaps = 1/322 (0%)
 Frame = +1

Query: 103  YEIPWVEKYRPTKVADVVGNEDALSRLQVIARDGNLPNLILTGPPGTGKTTSILALAHEL 282
            Y++PWVEKYRP+KVAD+VGNEDA+SRLQVIARDGN+PNLIL+GPPGTGKTTSILALAHEL
Sbjct: 10   YDVPWVEKYRPSKVADIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHEL 69

Query: 283  LG-PNCKEAVLELNASNDRGIDVVRNKIKMFAQKKVTLPPGRHKIAILDEADSMTSGAQQ 459
            LG PNCKEAVLELNAS+DRGIDVVRNKIKMFAQKKVTL PGRHKI ILDEADSMT+GAQQ
Sbjct: 70   LGGPNCKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLTPGRHKIVILDEADSMTTGAQQ 129

Query: 460  ALRRTMEIYSNSTRFALACNTSSKIIEPIQSRCALVRFSRLSDQEILGRLMIVIQAEKVP 639
            ALRRTMEIYSN+TRFALACNTS+KIIEPIQSRCA+VRFSRLSDQEILGRLM+V+QAEKVP
Sbjct: 130  ALRRTMEIYSNTTRFALACNTSAKIIEPIQSRCAIVRFSRLSDQEILGRLMVVVQAEKVP 189

Query: 640  YVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNILE 819
            YVPEGLEAIIFTADGDMRQALNNLQATYSGF+FVNQ NVFKVCDQPHPLHVKNMVRN++E
Sbjct: 190  YVPEGLEAIIFTADGDMRQALNNLQATYSGFQFVNQANVFKVCDQPHPLHVKNMVRNVIE 249

Query: 820  GNFDDACAGLKQLYNLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVG 999
            GNFD+AC+GLKQLY+LGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVG
Sbjct: 250  GNFDEACSGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVG 309

Query: 1000 SLLQLCGLLAKLSLVRETAKAV 1065
            S LQLCGLLAKLSLVRETAKAV
Sbjct: 310  SYLQLCGLLAKLSLVRETAKAV 331


>ref|XP_002509739.1| replication factor C / DNA polymerase III gamma-tau subunit, putative
            [Ricinus communis] gi|223549638|gb|EEF51126.1|
            replication factor C / DNA polymerase III gamma-tau
            subunit, putative [Ricinus communis]
          Length = 333

 Score =  601 bits (1549), Expect = e-169
 Identities = 294/320 (91%), Positives = 315/320 (98%)
 Frame = +1

Query: 103  YEIPWVEKYRPTKVADVVGNEDALSRLQVIARDGNLPNLILTGPPGTGKTTSILALAHEL 282
            Y++PWVEKYRP+K+ D+VGNEDA+SRLQVIARDGN+PNLIL+GPPGTGKTTSILALAHEL
Sbjct: 13   YDVPWVEKYRPSKICDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHEL 72

Query: 283  LGPNCKEAVLELNASNDRGIDVVRNKIKMFAQKKVTLPPGRHKIAILDEADSMTSGAQQA 462
            LGPN KEAVLELNAS+DRGIDVVRNKIKMFAQKKVTLPPGRHK+ ILDEADSMTSGAQQA
Sbjct: 73   LGPNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEADSMTSGAQQA 132

Query: 463  LRRTMEIYSNSTRFALACNTSSKIIEPIQSRCALVRFSRLSDQEILGRLMIVIQAEKVPY 642
            LRRTMEIYSNSTRFALACNTSSKIIEPIQSRCALVRFSRLSDQEILGRL+IV+QAEKVPY
Sbjct: 133  LRRTMEIYSNSTRFALACNTSSKIIEPIQSRCALVRFSRLSDQEILGRLIIVVQAEKVPY 192

Query: 643  VPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNILEG 822
            VPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVR+++EG
Sbjct: 193  VPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRHVMEG 252

Query: 823  NFDDACAGLKQLYNLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVGS 1002
             +DDAC+GLKQLY+LGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVGS
Sbjct: 253  KYDDACSGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVGS 312

Query: 1003 LLQLCGLLAKLSLVRETAKA 1062
             LQLCGLLAKL+LVR+TA+A
Sbjct: 313  YLQLCGLLAKLALVRDTARA 332


>ref|XP_003549857.1| PREDICTED: replication factor C subunit 2-like [Glycine max]
          Length = 332

 Score =  598 bits (1543), Expect = e-169
 Identities = 296/322 (91%), Positives = 316/322 (98%), Gaps = 1/322 (0%)
 Frame = +1

Query: 103  YEIPWVEKYRPTKVADVVGNEDALSRLQVIARDGNLPNLILTGPPGTGKTTSILALAHEL 282
            Y++PWVEKYRP+KVAD+VGNEDA+SRLQVIARDGN+PNLIL+GPPGTGKTTSILALAHEL
Sbjct: 11   YDVPWVEKYRPSKVADIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHEL 70

Query: 283  LG-PNCKEAVLELNASNDRGIDVVRNKIKMFAQKKVTLPPGRHKIAILDEADSMTSGAQQ 459
            LG PNCKEAVLELNAS+DRGIDVVRNKIKMFAQKKVTL PGRHKI ILDEADSMT+GAQQ
Sbjct: 71   LGGPNCKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLTPGRHKIVILDEADSMTTGAQQ 130

Query: 460  ALRRTMEIYSNSTRFALACNTSSKIIEPIQSRCALVRFSRLSDQEILGRLMIVIQAEKVP 639
            ALRRTMEIYSN+TRFALACNTS+KIIEPIQSRCA+VRFSRLSDQEILGRLM+V+QAEKVP
Sbjct: 131  ALRRTMEIYSNTTRFALACNTSAKIIEPIQSRCAIVRFSRLSDQEILGRLMVVVQAEKVP 190

Query: 640  YVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNILE 819
            YVPEGLEAIIFTADGDMRQALNNLQATYSGF+FVNQ NVFKVCDQPHPLHVKNMV N++E
Sbjct: 191  YVPEGLEAIIFTADGDMRQALNNLQATYSGFQFVNQANVFKVCDQPHPLHVKNMVCNVIE 250

Query: 820  GNFDDACAGLKQLYNLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVG 999
            GNFD+AC+GLKQLY+LGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVG
Sbjct: 251  GNFDEACSGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVG 310

Query: 1000 SLLQLCGLLAKLSLVRETAKAV 1065
            S LQLCGLLAKLSLVRETAKAV
Sbjct: 311  SYLQLCGLLAKLSLVRETAKAV 332


>ref|XP_004147970.1| PREDICTED: replication factor C subunit 2-like [Cucumis sativus]
            gi|449494241|ref|XP_004159490.1| PREDICTED: replication
            factor C subunit 2-like [Cucumis sativus]
          Length = 331

 Score =  597 bits (1540), Expect = e-168
 Identities = 293/320 (91%), Positives = 312/320 (97%)
 Frame = +1

Query: 103  YEIPWVEKYRPTKVADVVGNEDALSRLQVIARDGNLPNLILTGPPGTGKTTSILALAHEL 282
            Y+IPWVEKYRP KV D+VGNEDA+SRLQVIARDGN+PNLIL+GPPGTGKTTSILALAHEL
Sbjct: 11   YDIPWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHEL 70

Query: 283  LGPNCKEAVLELNASNDRGIDVVRNKIKMFAQKKVTLPPGRHKIAILDEADSMTSGAQQA 462
            LGPN KE VLELNAS+DRGIDVVRNKIKMFAQKKVTLPPGRHK+ ILDEADSMT+GAQQA
Sbjct: 71   LGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEADSMTTGAQQA 130

Query: 463  LRRTMEIYSNSTRFALACNTSSKIIEPIQSRCALVRFSRLSDQEILGRLMIVIQAEKVPY 642
            LRRTMEIYSN+TRFALACNTSSKIIEPIQSRCA+VRFSRL+DQEILGRLM+VIQAEKVPY
Sbjct: 131  LRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLMVVIQAEKVPY 190

Query: 643  VPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNILEG 822
            VPEGLEAIIFTADGDMRQALNNLQAT+SGFRFVNQ+NVFKVCDQPHPLHVKN+VRN+LEG
Sbjct: 191  VPEGLEAIIFTADGDMRQALNNLQATHSGFRFVNQDNVFKVCDQPHPLHVKNVVRNVLEG 250

Query: 823  NFDDACAGLKQLYNLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVGS 1002
             FDDAC GL+QLY+LGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVGS
Sbjct: 251  KFDDACTGLRQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVGS 310

Query: 1003 LLQLCGLLAKLSLVRETAKA 1062
             LQLCGLLAKLS+VRETAKA
Sbjct: 311  YLQLCGLLAKLSMVRETAKA 330


>ref|XP_002886430.1| hypothetical protein ARALYDRAFT_475032 [Arabidopsis lyrata subsp.
            lyrata] gi|297332271|gb|EFH62689.1| hypothetical protein
            ARALYDRAFT_475032 [Arabidopsis lyrata subsp. lyrata]
          Length = 334

 Score =  594 bits (1532), Expect = e-167
 Identities = 295/333 (88%), Positives = 313/333 (93%)
 Frame = +1

Query: 64   MAASGPXXXXXXXYEIPWVEKYRPTKVADVVGNEDALSRLQVIARDGNLPNLILTGPPGT 243
            MAAS         Y  PWVEKYRP+KV D+VGNEDA+SRLQVIARDGN+PNLIL+GPPGT
Sbjct: 1    MAASSSSTSSDGGYNNPWVEKYRPSKVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGT 60

Query: 244  GKTTSILALAHELLGPNCKEAVLELNASNDRGIDVVRNKIKMFAQKKVTLPPGRHKIAIL 423
            GKTTSILALAHELLGPN KEAVLELNAS+DRGIDVVRNKIKMFAQKKVTLPPGRHK+ IL
Sbjct: 61   GKTTSILALAHELLGPNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVIL 120

Query: 424  DEADSMTSGAQQALRRTMEIYSNSTRFALACNTSSKIIEPIQSRCALVRFSRLSDQEILG 603
            DEADSMTSGAQQALRRT+EIYSNSTRFALACNTSSKIIEPIQSRCALVRFSRLSDQ+ILG
Sbjct: 121  DEADSMTSGAQQALRRTIEIYSNSTRFALACNTSSKIIEPIQSRCALVRFSRLSDQQILG 180

Query: 604  RLMIVIQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHP 783
            RL++V++AE VPYVPEGLEAIIFTADGDMRQALNNLQAT+SGFRFVNQENVFKVCDQPHP
Sbjct: 181  RLLVVVEAENVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQENVFKVCDQPHP 240

Query: 784  LHVKNMVRNILEGNFDDACAGLKQLYNLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKET 963
            LHVKN+VRN+LE  FDDAC GLKQLY+LGYSPTDIITTLFRIIKNYDMAEYLKLEFMKET
Sbjct: 241  LHVKNIVRNVLESKFDDACHGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKET 300

Query: 964  GFAHMRICDGVGSLLQLCGLLAKLSLVRETAKA 1062
            GFAHMRICDGVGS LQLCGLLAKLS+ RETAKA
Sbjct: 301  GFAHMRICDGVGSYLQLCGLLAKLSIARETAKA 333