BLASTX nr result
ID: Coptis23_contig00005982
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00005982
(2612 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002534335.1| RNA binding protein, putative [Ricinus commu... 717 0.0
ref|XP_002270665.1| PREDICTED: zinc finger CCCH domain-containin... 698 0.0
ref|XP_002320513.1| predicted protein [Populus trichocarpa] gi|2... 687 0.0
emb|CBI28414.3| unnamed protein product [Vitis vinifera] 623 e-176
ref|XP_002529054.1| RNA binding protein, putative [Ricinus commu... 574 e-161
>ref|XP_002534335.1| RNA binding protein, putative [Ricinus communis]
gi|223525472|gb|EEF28048.1| RNA binding protein, putative
[Ricinus communis]
Length = 578
Score = 717 bits (1850), Expect = 0.0
Identities = 364/586 (62%), Positives = 436/586 (74%), Gaps = 2/586 (0%)
Frame = +2
Query: 395 MDFTEATKTVYDRIQTLEPDHVSKIIGYLLLQDNGERDMIRLAFGPDISIQSLITQAKLE 574
MDFTE+TK VY+RIQ LEP++VSKIIGYLLLQD+ ER+MIRLAF PD I SLIT+AK +
Sbjct: 1 MDFTESTKVVYNRIQKLEPENVSKIIGYLLLQDHSEREMIRLAFSPDNLIYSLITKAKSD 60
Query: 575 LGLSPKPGISAPIPPASMNPAPASDLPLQFTXXXXXXXXXXXXXX-TLRVAPPYWDPLVM 751
LGL+ KP +SAPI P+ +N +P SD+PLQFT + R A YWD V
Sbjct: 61 LGLN-KPALSAPISPSQVNTSPVSDIPLQFTPFSPASAHPISSPAASRRTASAYWDAQVT 119
Query: 752 VDQQPLHNMDFISPAYSDTVSDDYRFHNQAQFLSLEDQLDAVNHSGHDFSSNFFYPDGTL 931
DQQ + N+DF SP YSDTV +DYR N QFL+L+DQ + + DFSSN+FY + L
Sbjct: 120 GDQQQVPNLDFGSPGYSDTVPEDYRLQNHMQFLTLDDQFEFAHSVNSDFSSNYFYSEPAL 179
Query: 932 GNMSARTSRRSPSLPEFPVKACHYFNKGFCKHGSNCRYFHGQPVPDSFSQIFSPNSSDLI 1111
G RT+RRSPSLPEFP+K CHYF+KG+CKHG+NCRY HG P+P+ FSQIFS S+D
Sbjct: 180 G---PRTNRRSPSLPEFPLKICHYFSKGYCKHGNNCRYVHGHPMPEGFSQIFSTKSNDFS 236
Query: 1112 TDDHFL-PGSXXXXXXXXXXXXXSRRGCPVSIASLPLLYQEKYGRTLQAEGYLTESQRHG 1288
D+H + PGS SRRG PVSIASLP++Y EKYG+TLQAEGYLTESQRHG
Sbjct: 237 NDEHVVSPGSLEKLEMELAELLKSRRGMPVSIASLPMMYYEKYGKTLQAEGYLTESQRHG 296
Query: 1289 KAGYSLTKLLARLKNSIRLIDRPHGQHAVVLAEDAPRYMEYRNDRSDPGGVVAGSRQIYL 1468
KAGYSLTKLLARLKNSIR+IDRPHGQH+V+L ED P+Y+EY +R+DPGG+VAGSRQIYL
Sbjct: 297 KAGYSLTKLLARLKNSIRVIDRPHGQHSVILEEDVPKYLEYVGERNDPGGIVAGSRQIYL 356
Query: 1469 TFPAESTFTEEDVSNYFKNFGPVQDVRIPCQQKRMFGFVTFLYPETVKIILTKGNPHFVC 1648
TFPAES FTE DVS YF FGPVQDVRIPCQQKRMFGFVTF++ ETVK IL KGNPH+VC
Sbjct: 357 TFPAESIFTEHDVSIYFSKFGPVQDVRIPCQQKRMFGFVTFIFVETVKQILAKGNPHYVC 416
Query: 1649 GARVLVKPYREKSRLVDRKYNEKSDSPLYYPSNFLDMEPEMQIAPRLCDTSRLLRKQFME 1828
GARVLVKPYREKSRL+DRK++EK P+Y S+F+D + E+ P + D SRLLRKQ ME
Sbjct: 417 GARVLVKPYREKSRLIDRKFSEKLQHPMYNSSHFIDGDSELHPMPTISDNSRLLRKQLME 476
Query: 1829 DHXXXXXXXXXXXXXXXXGHRPLAHQPYFGYSMDDLKVSDAHRDQSEFTSRDRFNYLFDV 2008
++ G + L HQ Y G SMD+LK+S+ H +EF S +RFNYL DV
Sbjct: 477 ENEHALEFERRRLLEFHLGPKSLNHQSYLGCSMDELKLSEEH---AEFPSAERFNYLLDV 533
Query: 2009 FNNGSTSDDKGRHSNSNNYSDQESQGLNLPESPFASPMGSSISTVI 2146
NNGS+S+ K R S NY+DQ+SQG+NLPESPFASP+ S ISTV+
Sbjct: 534 LNNGSSSEGKFRRI-STNYNDQDSQGINLPESPFASPIRSGISTVM 578
>ref|XP_002270665.1| PREDICTED: zinc finger CCCH domain-containing protein 18-like [Vitis
vinifera]
Length = 572
Score = 698 bits (1802), Expect = 0.0
Identities = 364/591 (61%), Positives = 434/591 (73%), Gaps = 8/591 (1%)
Frame = +2
Query: 395 MDFTEATKTVYDRIQTLEPDHVSKIIGYLLLQDNGERDMIRLAFGPDISIQSLITQAKLE 574
MDF+E+TK VY+RIQ LEP++VSKIIGYLLLQD+GERDMIR AF D +IQ LI +AK E
Sbjct: 1 MDFSESTKVVYNRIQKLEPENVSKIIGYLLLQDHGERDMIRRAFTSDNAIQCLINKAKAE 60
Query: 575 LGLSPKPGISAPIPPASMNPAPASDLPLQFTXXXXXXXXXXXXXXTLRVAPPYWDPLVMV 754
LGLS KP +S+PI P +NP+P SDLPLQFT R YWDP V
Sbjct: 61 LGLSSKPAVSSPISPPQVNPSPVSDLPLQFTPFSPASARPFPSP---RPGNSYWDPQVNG 117
Query: 755 DQQPLHNM-DFISPAYSDTVSDDYRFHNQAQFLSLEDQLDAVNHSGHDFSSNFFYPDGTL 931
DQQ +H + DF+ YSD++ DD+R +Q FL++EDQL+ N G +FS +++Y + L
Sbjct: 118 DQQQVHKLGDFVPQGYSDSLPDDFRLQSQIHFLAMEDQLE--NSVGSEFSGSYYYAEQAL 175
Query: 932 GNMSARTSRRSPSLPEFPVKACHYFNKGFCKHGSNCRYFHGQPVPDSFSQIFSPNSSDLI 1111
+ R SRRSPSLPEFP+K CHYFNKGFCKHG++CRYFHG P+ +SFSQIFSP +++L
Sbjct: 176 ---NTRISRRSPSLPEFPLKVCHYFNKGFCKHGNSCRYFHGHPMLESFSQIFSPGANELP 232
Query: 1112 TDDH-FLPGSXXXXXXXXXXXXXSRRGCPVSIASLPLLYQEKYGRTLQAEGYLTESQRHG 1288
DDH F PGS SRRGCPVSIASLP++Y EKYGRTLQAEGYLTESQRHG
Sbjct: 233 NDDHVFPPGSLEKLELELTELLKSRRGCPVSIASLPMMYYEKYGRTLQAEGYLTESQRHG 292
Query: 1289 KAGYSLTKLLARLKNSIRLIDRPHGQHAVVLAEDAPRYMEYRNDRSDPGGVVAGSRQIYL 1468
KAGYSLTKLLARLKNSIRLIDRPHGQH+V+LAED P+YME +RSDPG +V S+QIYL
Sbjct: 293 KAGYSLTKLLARLKNSIRLIDRPHGQHSVILAEDLPKYMEVNGERSDPGAIVGSSKQIYL 352
Query: 1469 TFPAESTFTEEDVSNYFKNFGPVQDVRIPCQQKRMFGFVTFLYPETVKIILTKGNPHFVC 1648
TFPA+STFTE+DVSNYF FGPVQDVRIPCQQKRMFGFVTF++ ETVK ILTKGNPH++C
Sbjct: 353 TFPADSTFTEQDVSNYFNKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILTKGNPHYIC 412
Query: 1649 GARVLVKPYREK--SRLVDRKYNEKSDSPLYYPSNFLDMEPEMQIAPRLCDTSRLLRK-Q 1819
GARVLVKPYREK SR VDR+ + P+YY +F+D + E+Q PR+CD SRLLRK Q
Sbjct: 413 GARVLVKPYREKASSRTVDRRQH-----PMYYSPHFIDEDSELQSIPRVCDNSRLLRKQQ 467
Query: 1820 FMEDHXXXXXXXXXXXXXXXXGHRPLAHQPYFGYSMDDLKVSD--AHRDQSEFTSRDRFN 1993
ME+H P PYFGYSMD+ K AH +Q+EF S +R N
Sbjct: 468 LMEEHEQALELERRRLSELQL--TPKTAHPYFGYSMDEFKQHSDAAHAEQAEFPSAERLN 525
Query: 1994 YLFDVFNNGSTSDDKGRHSNSNNYSDQE-SQGLNLPESPFASPMGSSISTV 2143
YL +V NNGSTS+D+ S NY++QE SQGLNLPESPFASP+ +SISTV
Sbjct: 526 YLLEVLNNGSTSEDR-----STNYNEQESSQGLNLPESPFASPIRNSISTV 571
>ref|XP_002320513.1| predicted protein [Populus trichocarpa] gi|222861286|gb|EEE98828.1|
predicted protein [Populus trichocarpa]
Length = 554
Score = 687 bits (1773), Expect = 0.0
Identities = 350/585 (59%), Positives = 417/585 (71%), Gaps = 1/585 (0%)
Frame = +2
Query: 395 MDFTEATKTVYDRIQTLEPDHVSKIIGYLLLQDNGERDMIRLAFGPDISIQSLITQAKLE 574
MDF+E+TK VY+RIQ +EP+ V KIIGY+LLQ++GER+MIRLAF PD I + I++AK +
Sbjct: 1 MDFSESTKVVYNRIQEIEPEFVGKIIGYILLQNHGEREMIRLAFSPDNLIYATISKAKSD 60
Query: 575 LGLSPKPGISAPIPPASMNPAPASDLPLQFTXXXXXXXXXXXXXXTLRVAPPYWDPLVMV 754
LGL+ P + PI P+ +NPAP SD+ LQF +R A +WD V
Sbjct: 61 LGLNKTP-VPNPISPSQVNPAPVSDVHLQFIPNTAVSSHPISSPIKIRTAGSFWDAQVT- 118
Query: 755 DQQPLHNMDFISPAYSDTVSDDYRFHNQAQFLSLEDQLDAVNHSGHDFSSNFFYPDGTLG 934
DYR NQ QFL+ +DQL+ VN DFSS++FYP+ LG
Sbjct: 119 ---------------------DYRLQNQMQFLTSDDQLEFVNS---DFSSSYFYPEPALG 154
Query: 935 NMSARTSRRSPSLPEFPVKACHYFNKGFCKHGSNCRYFHGQPVPDSFSQIFSPNSSDLIT 1114
RTSRRSPSLPEFPVK CHYFNKGFCKHG+NCRYFHG P+P+SFSQI S NS+++
Sbjct: 155 ---PRTSRRSPSLPEFPVKICHYFNKGFCKHGNNCRYFHGHPMPESFSQILSLNSNEIAN 211
Query: 1115 DDHFL-PGSXXXXXXXXXXXXXSRRGCPVSIASLPLLYQEKYGRTLQAEGYLTESQRHGK 1291
D+HF+ PGS SRRG PVSIASLP++Y EKYGR LQAEGYLTESQRHGK
Sbjct: 212 DEHFISPGSLEKLELELTELLKSRRGVPVSIASLPMMYYEKYGRMLQAEGYLTESQRHGK 271
Query: 1292 AGYSLTKLLARLKNSIRLIDRPHGQHAVVLAEDAPRYMEYRNDRSDPGGVVAGSRQIYLT 1471
AGYSLTKLLARLKNSIRLIDRPHGQH+V+L ED P+Y+EY +R+DPGG+VAGSRQIYLT
Sbjct: 272 AGYSLTKLLARLKNSIRLIDRPHGQHSVILTEDVPKYLEYAGERNDPGGIVAGSRQIYLT 331
Query: 1472 FPAESTFTEEDVSNYFKNFGPVQDVRIPCQQKRMFGFVTFLYPETVKIILTKGNPHFVCG 1651
FPAESTFTE+DVSNYF FGPVQDVRIPCQQKRMFGFVTF++ ETVK IL+KGNPH VCG
Sbjct: 332 FPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILSKGNPHHVCG 391
Query: 1652 ARVLVKPYREKSRLVDRKYNEKSDSPLYYPSNFLDMEPEMQIAPRLCDTSRLLRKQFMED 1831
ARVLVKPYREKSRLVDRKY EK P +Y +F+D + E+ PR+CD SRLLRKQ ME+
Sbjct: 392 ARVLVKPYREKSRLVDRKYAEKIQHPFFYSQHFIDGDSELHSVPRVCDNSRLLRKQLMEE 451
Query: 1832 HXXXXXXXXXXXXXXXXGHRPLAHQPYFGYSMDDLKVSDAHRDQSEFTSRDRFNYLFDVF 2011
H +PLA Y G+SMD+ K+S+ DQ F S + FNY FDV
Sbjct: 452 HEQALELERRRLSEFQLAPKPLARHAYHGHSMDEFKLSEEQADQ--FPSAEHFNYWFDVL 509
Query: 2012 NNGSTSDDKGRHSNSNNYSDQESQGLNLPESPFASPMGSSISTVI 2146
NNGSTS++K RH+ +N +QG+NLPESPFAS +G ISTVI
Sbjct: 510 NNGSTSEEKHRHTRTNCSEQDSNQGVNLPESPFASAIGKGISTVI 554
>emb|CBI28414.3| unnamed protein product [Vitis vinifera]
Length = 525
Score = 623 bits (1607), Expect = e-176
Identities = 342/599 (57%), Positives = 406/599 (67%), Gaps = 7/599 (1%)
Frame = +2
Query: 368 PLTPGNQCKMDFTEATKTVYDRIQTLEPDHVSKIIGYLLLQDNGERDMIRLAFGPDISIQ 547
PL MDF+E+TK VY+RIQ LEP++VSKIIGYLLLQD+GERDMIR AF D +IQ
Sbjct: 5 PLFSWVDTDMDFSESTKVVYNRIQKLEPENVSKIIGYLLLQDHGERDMIRRAFTSDNAIQ 64
Query: 548 SLITQAKLELGLSPKPGISAPIPPASMNPAPASDLPLQFTXXXXXXXXXXXXXXTLRVAP 727
LI +AK ELGLS KP +S+PI +P
Sbjct: 65 CLINKAKAELGLSSKPAVSSPI------------------------------------SP 88
Query: 728 PYWDPLVMVDQQPLHNMDFISPAYSDTVSDDYRFHNQAQFLSLEDQLDAVNHSGHDFSSN 907
P +P SP+ S Q FL++EDQL+ N G +FS +
Sbjct: 89 PQVNP---------------SPSMS-----------QIHFLAMEDQLE--NSVGSEFSGS 120
Query: 908 FFYPDGTLGNMSARTSRRSPSLPEFPVKACHYFNKGFCKHGSNCRYFHGQPVPDSFSQIF 1087
++Y + L + R SRRSPSLPEFP+K CHYFNKGFCKHG++CRYFHG P+ +SFSQIF
Sbjct: 121 YYYAEQAL---NTRISRRSPSLPEFPLKVCHYFNKGFCKHGNSCRYFHGHPMLESFSQIF 177
Query: 1088 SPNSSDLITDDH-FLPGSXXXXXXXXXXXXXSRRGCPVSIASLPLLYQEKYGRTLQAEGY 1264
SP +++L DDH F PGS SRRGCPVSIASLP++Y EKYGRTLQAEGY
Sbjct: 178 SPGANELPNDDHVFPPGSLEKLELELTELLKSRRGCPVSIASLPMMYYEKYGRTLQAEGY 237
Query: 1265 LTESQRHGKAGYSLTKLLARLKNSIRLIDRPHGQHAVVLAEDAPRYMEYRNDRSDPGGVV 1444
LTESQRHGKAGYSLTKLLARLKNSIRLIDRPHGQH+V+LAED P+YME +RSDPG +V
Sbjct: 238 LTESQRHGKAGYSLTKLLARLKNSIRLIDRPHGQHSVILAEDLPKYMEVNGERSDPGAIV 297
Query: 1445 AGSRQIYLTFPAESTFTEEDVSNYFKNFGPVQDVRIPCQQKRMFGFVTFLYPETVKIILT 1624
S+QIYLTFPA+STFTE+DVSNYF FGPVQDVRIPCQQKRMFGFVTF++ ETVK ILT
Sbjct: 298 GSSKQIYLTFPADSTFTEQDVSNYFNKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILT 357
Query: 1625 KGNPHFVCGARVLVKPYREK--SRLVDRKYNEKSDSPLYYPSNFLDMEPEMQIAPRLCDT 1798
KGNPH++CGARVLVKPYREK SR VDR+ + P+YY +F+D + E+Q PR+CD
Sbjct: 358 KGNPHYICGARVLVKPYREKASSRTVDRRQH-----PMYYSPHFIDEDSELQSIPRVCDN 412
Query: 1799 SRLLRK-QFMEDHXXXXXXXXXXXXXXXXGHRPLAHQPYFGYSMDDLKVSD--AHRDQSE 1969
SRLLRK Q ME+H P PYFGYSMD+ K AH +Q+E
Sbjct: 413 SRLLRKQQLMEEHEQALELERRRLSELQL--TPKTAHPYFGYSMDEFKQHSDAAHAEQAE 470
Query: 1970 FTSRDRFNYLFDVFNNGSTSDDKGRHSNSNNYSDQE-SQGLNLPESPFASPMGSSISTV 2143
F S +R NYL +V NNGSTS+D+ S NY++QE SQGLNLPESPFASP+ +SISTV
Sbjct: 471 FPSAERLNYLLEVLNNGSTSEDR-----STNYNEQESSQGLNLPESPFASPIRNSISTV 524
>ref|XP_002529054.1| RNA binding protein, putative [Ricinus communis]
gi|223531534|gb|EEF33365.1| RNA binding protein, putative
[Ricinus communis]
Length = 551
Score = 574 bits (1480), Expect = e-161
Identities = 311/586 (53%), Positives = 381/586 (65%), Gaps = 2/586 (0%)
Frame = +2
Query: 395 MDFTEATKTVYDRIQTLEPDHVSKIIGYLLLQDNGERDMIRLAFGPDISIQSLITQAKLE 574
MDF+E T+ V+++I+ +EP++V+KIIGYLLLQD +++MI LA PD+ IQ +I +AK E
Sbjct: 1 MDFSEHTRVVFNKIKKIEPENVTKIIGYLLLQDGSDQEMINLAMSPDVVIQDVIYKAKAE 60
Query: 575 LGLSPKPGISAPIPPASMNPAPASDLPLQFTXXXXXXXXXXXXXXTLRVAPPYWDPLVMV 754
L + P+ P+ +P S+ QF RV YW+ V
Sbjct: 61 LNQLALKSAATPLSPSMNSPPAVSEFSSQFRAFSPVSSRSYLSPQHFRVPSTYWESQVAS 120
Query: 755 DQQPLHNMDFISPAYSDTVSDDYRFHNQAQFLSLEDQLDAVNHSGHDFSSNFFYPDGTLG 934
H+ DF+ Y D++++ NQAQFLSLEDQL++VN F S+ FY D LG
Sbjct: 121 K----HSSDFVPMTYQDSMTE---LQNQAQFLSLEDQLESVNLGNAGFPSDLFYSDAALG 173
Query: 935 NMSARTSRRSPSLPEFPVKACHYFNKGFCKHGSNCRYFHGQPVPDSFSQIFSPNSSDLIT 1114
+ AR RR SL E +K CHYFNKG+CKHGSNCRYFHGQ + DSF + F + D I
Sbjct: 174 SFRARAGRRYSSLNENSMKICHYFNKGYCKHGSNCRYFHGQ-ISDSFPRTFDAINEDQI- 231
Query: 1115 DDHFLPGSXXXXXXXXXXXXXSRRGCPVSIASLPLLYQEKYGRTLQAEGYLTESQRHGKA 1294
F PGS SR+G PVSIASLP+LY EKYG+ LQA+GYLTESQRHGKA
Sbjct: 232 ---FSPGSLEKLELEIIELLKSRKGNPVSIASLPMLYYEKYGKVLQADGYLTESQRHGKA 288
Query: 1295 GYSLTKLLARLKNSIRLIDRPHGQHAVVLAEDAPRYMEYRNDRSDPGGVVAGSRQIYLTF 1474
GYSLTKLLARLKNSIRLIDRPHGQHAV+LAED P+YME R DR+DPG +V+GSRQIYLTF
Sbjct: 289 GYSLTKLLARLKNSIRLIDRPHGQHAVILAEDVPKYMENRGDRNDPGPIVSGSRQIYLTF 348
Query: 1475 PAESTFTEEDVSNYFKNFGPVQDVRIPCQQKRMFGFVTFLYPETVKIILTKGNPHFVCGA 1654
PAESTFTE+DVSNYF FGPV+DVRIPCQQKRMFGFVTF +TVKIIL KGNPHFVC A
Sbjct: 349 PAESTFTEDDVSNYFNKFGPVEDVRIPCQQKRMFGFVTFESADTVKIILAKGNPHFVCNA 408
Query: 1655 RVLVKPYREKSRLVDRKYNEKSDSPLYYPSNFLDMEPEMQIAPRLCDTSRLLRKQFMEDH 1834
RVLVKPYRE L+ Y+ S+++DM+ E+ R +TSRLLRKQ +E+
Sbjct: 409 RVLVKPYRENQSLL-----------XYFSSHYVDMDAELHSMSRGYETSRLLRKQLLEEQ 457
Query: 1835 XXXXXXXXXXXXXXXXGHRPLAHQPYFGYSMDDLKVSDAHRDQSEFTSRDRFNYLFDV-- 2008
+P++H YF Y MD KVS+ D F + V
Sbjct: 458 EQALELERRQRLAELRIRKPVSHHSYFDYPMDGFKVSE-----------DNFELPYHVLD 506
Query: 2009 FNNGSTSDDKGRHSNSNNYSDQESQGLNLPESPFASPMGSSISTVI 2146
F NGS +DDK RH + NY+DQ+SQGLNLPESPFAS + SSIST+I
Sbjct: 507 FINGSGNDDKIRHIET-NYADQDSQGLNLPESPFASAIPSSISTII 551