BLASTX nr result
ID: Coptis23_contig00005976
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00005976
(1915 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002264290.1| PREDICTED: transcription initiation factor T... 825 0.0
ref|XP_002276969.1| PREDICTED: transcription initiation factor T... 807 0.0
emb|CBI26708.3| unnamed protein product [Vitis vinifera] 801 0.0
ref|XP_003518649.1| PREDICTED: transcription initiation factor T... 781 0.0
ref|XP_002320500.1| predicted protein [Populus trichocarpa] gi|2... 771 0.0
>ref|XP_002264290.1| PREDICTED: transcription initiation factor TFIID subunit 6 [Vitis
vinifera] gi|297739126|emb|CBI28777.3| unnamed protein
product [Vitis vinifera]
Length = 543
Score = 825 bits (2130), Expect = 0.0
Identities = 410/545 (75%), Positives = 469/545 (86%)
Frame = +2
Query: 203 MSIVPKETIEVIAQSIGINNLSPDVALALAPDVEYRMREIMQEAIKCMRHSKRTILTADD 382
MSIV KETIEVIAQSIGI NLS DVALALAPDVEYRMRE+MQEAIKCMRHSKRT+LT DD
Sbjct: 1 MSIVSKETIEVIAQSIGIANLSADVALALAPDVEYRMREVMQEAIKCMRHSKRTVLTTDD 60
Query: 383 VDSALNLRNVEPIYGFASGDPLRFKRAVGHKDLFYIDDKDVEFKDVIEAPIPKAPLDTAV 562
VD ALNLRNVEPIYGF SG PLRFKRAVGHK+LFYIDDKD++FKDVIEAP+PKAPLD AV
Sbjct: 61 VDIALNLRNVEPIYGFTSGGPLRFKRAVGHKNLFYIDDKDLDFKDVIEAPLPKAPLDAAV 120
Query: 563 VAHWLAIEGVQPAIPENAPVEALVAPSDNRKSEQKEEGLPVEIKLPIKHVLSRELQLYFD 742
V HWLAIEGVQPAIPENAPVE + APSD +K EQK++GLPV+IKLPIKHVLSRELQLYFD
Sbjct: 121 VCHWLAIEGVQPAIPENAPVEVIAAPSDGKKFEQKDDGLPVDIKLPIKHVLSRELQLYFD 180
Query: 743 KITDLTVSRSDSVLFKEALASLATDSGLHPLVPYFTYYISDEVTRSLNNFPLLFALMRVV 922
KI DLTV+RSDS LFKEAL SLATDSGLHPLVPYFTY+ISDEV+R LN+F LLFALMRVV
Sbjct: 181 KIIDLTVNRSDSALFKEALVSLATDSGLHPLVPYFTYFISDEVSRGLNDFNLLFALMRVV 240
Query: 923 RSLLQNPHIHIEPYLHQLMPSVITCLVAKRLGNRFSDNHWELRNFTANLVTSICKRFGHV 1102
SLLQNPHIHIEPYLHQLMPSV+TCLVAKR+GNR +DNHWELR+FTANLV SICKRFGHV
Sbjct: 241 WSLLQNPHIHIEPYLHQLMPSVVTCLVAKRIGNRLADNHWELRDFTANLVASICKRFGHV 300
Query: 1103 YHNLQPRVTRTLLHAFLDPTKSLTQHYGAIQGLSALGPSVIRLLILPNLEPYLQLLEPEI 1282
Y+NLQ R+T+TLLHAFLDP +S+TQHYGAIQGL+ALGP+++RLLI+PNLEPYL+LLEPE+
Sbjct: 301 YNNLQTRLTKTLLHAFLDPKRSMTQHYGAIQGLAALGPNMVRLLIVPNLEPYLRLLEPEM 360
Query: 1283 LLEKQKNEMKRHEAWRVYGSLLCASGQCMYDRLKLFPSLLSPPTRTVWRTTQRVATTMPN 1462
LLEKQKNE+KRHEAW VYG+LL A+GQ +YDRLK+FP+L SPP R V+RT RV T+ PN
Sbjct: 361 LLEKQKNELKRHEAWCVYGALLRATGQSIYDRLKMFPALPSPPAR-VFRTNGRVVTSPPN 419
Query: 1463 KRKMSQEHLGQQPSLKRVATEGSIGALPATSMQTDMQLAADGFPATSVDSSMAPSSSLRQ 1642
KRK + EHL QQPSLK++AT+G + +P T++ ++MQ P S D M PSSS RQ
Sbjct: 420 KRKANNEHLEQQPSLKKIATDGPMDVVP-TNLSSNMQPPETKGPVPSTDPDMGPSSSSRQ 478
Query: 1643 VTNDKNSGGSSRREKSEARPPKMSISLAQAWKEDMDAGHLLASLFEFFGESILPFTPAAE 1822
+ + S R+ K ++R KMS L Q W++D+ +GHLL SLFE FGESILPF PA E
Sbjct: 479 IPHGNISDSRDRKGKGDSRALKMSAVLTQTWRDDLKSGHLLVSLFELFGESILPFIPAPE 538
Query: 1823 LSFFL 1837
+S FL
Sbjct: 539 MSLFL 543
>ref|XP_002276969.1| PREDICTED: transcription initiation factor TFIID subunit 6-like
[Vitis vinifera]
Length = 543
Score = 807 bits (2084), Expect = 0.0
Identities = 403/547 (73%), Positives = 467/547 (85%), Gaps = 2/547 (0%)
Frame = +2
Query: 203 MSIVPKETIEVIAQSIGINNLSPDVALALAPDVEYRMREIMQEAIKCMRHSKRTILTADD 382
MSIVPKETIEVIAQSIGI+N SPDVA ALA DVEYR+REIMQEAIKCMRHSKRTILT +D
Sbjct: 1 MSIVPKETIEVIAQSIGISNFSPDVAPALATDVEYRVREIMQEAIKCMRHSKRTILTVND 60
Query: 383 VDSALNLRNVEPIYGFASGDPLRFKRAVGHKDLFYIDDKDVEFKDVIEAPIPKAPLDTAV 562
VDSAL LRNVEP+YGF SG P +FKRA GHKDLFY+DDKDVEFKD+IEAP+PK PLDT V
Sbjct: 61 VDSALKLRNVEPLYGFTSGGPRQFKRAAGHKDLFYVDDKDVEFKDLIEAPLPKTPLDTGV 120
Query: 563 VAHWLAIEGVQPAIPENAPVEALVAPSDNRKSEQKEEGLPVEIKLPIKHVLSRELQLYFD 742
+ HWLAIEGVQPAI ENAP+EAL PSDN+KSE KE+GLPV+ KLP+KHVLSRELQLYFD
Sbjct: 121 ITHWLAIEGVQPAISENAPIEALAVPSDNKKSEYKEDGLPVDTKLPVKHVLSRELQLYFD 180
Query: 743 KITDLTVSRSDSVLFKEALASLATDSGLHPLVPYFTYYISDEVTRSLNNFPLLFALMRVV 922
KI +LT+SRSDS+LFKEAL SLATDSG+HPLVPYFTY+I+DEVTR+LN+F +LFALMRV
Sbjct: 181 KIKELTLSRSDSILFKEALVSLATDSGIHPLVPYFTYFIADEVTRNLNDFSILFALMRVA 240
Query: 923 RSLLQNPHIHIEPYLHQLMPSVITCLVAKRLGNRFSDNHWELRNFTANLVTSICKRFGHV 1102
RSLLQN IHIEPYLHQLMPS+ITCLVAKRLG+RFSDNHWELR+FTANLV S+CKR+GHV
Sbjct: 241 RSLLQNQQIHIEPYLHQLMPSIITCLVAKRLGSRFSDNHWELRSFTANLVASVCKRYGHV 300
Query: 1103 YHNLQPRVTRTLLHAFLDPTKSLTQHYGAIQGLSALGPSVIRLLILPNLEPYLQLLEPEI 1282
YHNLQPRVTRTLLHAFLDPTK+L QHYGAIQGL+A GPSV+RLLILPNLEPYL+LLEPE+
Sbjct: 301 YHNLQPRVTRTLLHAFLDPTKALPQHYGAIQGLAAFGPSVVRLLILPNLEPYLRLLEPEM 360
Query: 1283 LLEKQKNEMKRHEAWRVYGSLLCASGQCMYDRLKLFPSLLSPPTRTVWRTTQRVATTMPN 1462
LEKQKN MKRHEAWRVYG+LLCA+G CMYDRLK FP+LLSPPTR + ++ +++ T P+
Sbjct: 361 QLEKQKNGMKRHEAWRVYGALLCAAGTCMYDRLKTFPNLLSPPTRAILKSNKKILPTKPS 420
Query: 1463 KRKMSQEHLGQQPSLKRVATEGSIGALPATSMQTDMQLAADGF-PATSVDSS-MAPSSSL 1636
KRK S ++L QQP LK++AT+GS+G +P S+ D Q GF +T+V SS + SS
Sbjct: 421 KRKASTDNLMQQPPLKKLATDGSMGVMPINSLAVDKQGLTGGFSTSTAVGSSDVGLSSMS 480
Query: 1637 RQVTNDKNSGGSSRREKSEARPPKMSISLAQAWKEDMDAGHLLASLFEFFGESILPFTPA 1816
+Q+ ++ SGG R + R K S LAQAWK D++AG L ASLFE+FGES+ FTP+
Sbjct: 481 QQLASENISGG---RREVGTRALKASAVLAQAWK-DVNAGQLSASLFEYFGESMFCFTPS 536
Query: 1817 AELSFFL 1837
ELS FL
Sbjct: 537 PELSLFL 543
>emb|CBI26708.3| unnamed protein product [Vitis vinifera]
Length = 547
Score = 801 bits (2068), Expect = 0.0
Identities = 403/551 (73%), Positives = 466/551 (84%), Gaps = 6/551 (1%)
Frame = +2
Query: 203 MSIVPKETIEVIAQSIGINNLSPDVALALAPDVEYRMREIMQEAIKCMRHSKRTILTADD 382
MSIVPKETIEVIAQSIGI+N SPDVA ALA DVEYR+REIMQEAIKCMRHSKRTILT +D
Sbjct: 1 MSIVPKETIEVIAQSIGISNFSPDVAPALATDVEYRVREIMQEAIKCMRHSKRTILTVND 60
Query: 383 VDSALNLRNVEPIYGFASGDPLRFKRAVGHKDLFYIDDKDVEFKDVIEAPIPKAPLDTAV 562
VDSAL LRNVEP+YGF SG P +FKRA GHKDLFY+DDKDVEFKD+IEAP+PK PLDT V
Sbjct: 61 VDSALKLRNVEPLYGFTSGGPRQFKRAAGHKDLFYVDDKDVEFKDLIEAPLPKTPLDTGV 120
Query: 563 VAHWLAIEGVQPAIPENAPVEALVAPSDNRKSEQKEEGLPVEIKLPIKHVLSRELQLYFD 742
+ HWLAIEGVQPAI ENAP+EAL PSDN+KSE KE+GLPV+ KLP+KHVLSRELQLYFD
Sbjct: 121 ITHWLAIEGVQPAISENAPIEALAVPSDNKKSEYKEDGLPVDTKLPVKHVLSRELQLYFD 180
Query: 743 KITDLTVSRSDSVLFKEALASLATDSGLHPLVPYFTYYISDEVTRSLNNFPLLFALMRVV 922
KI +LT+SRSDS+LFKEAL SLATDSG+HPLVPYFTY+I+DEVTR+LN+F +LFALMRV
Sbjct: 181 KIKELTLSRSDSILFKEALVSLATDSGIHPLVPYFTYFIADEVTRNLNDFSILFALMRVA 240
Query: 923 RSLLQNPHIHIEPYLHQLMPSVITCLVAKRLGNRFSDNHWELRNFTANLVTSICKRFGHV 1102
RSLLQN IHIEPYLHQLMPS+ITCLVAKRLG+RFSDNHWELR+FTANLV S+CKR+GHV
Sbjct: 241 RSLLQNQQIHIEPYLHQLMPSIITCLVAKRLGSRFSDNHWELRSFTANLVASVCKRYGHV 300
Query: 1103 YHNLQPRVTRTLLHAFLDPTKSLTQHYGAIQGLSALGPSVIRLLILPNLEPYLQLLEPEI 1282
YHNLQPRVTRTLLHAFLDPTK+L QHYGAIQGL+A GPSV+RLLILPNLEPYL+LLEPE+
Sbjct: 301 YHNLQPRVTRTLLHAFLDPTKALPQHYGAIQGLAAFGPSVVRLLILPNLEPYLRLLEPEM 360
Query: 1283 LLEKQKNEMKRHEAWRVYGSLLCASGQCMYDRLKLFPSLLSPPTRTVWRTTQRVATTM-- 1456
LEKQKN MKRHEAWRVYG+LLCA+G CMYDRLK FP+LLSPPTR + ++ +++ T
Sbjct: 361 QLEKQKNGMKRHEAWRVYGALLCAAGTCMYDRLKTFPNLLSPPTRAILKSNKKILPTKPK 420
Query: 1457 --PNKRKMSQEHLGQQPSLKRVATEGSIGALPATSMQTDMQLAADGF-PATSVDSS-MAP 1624
P KRK S ++L QQP LK++AT+GS+G +P S+ D Q GF +T+V SS +
Sbjct: 421 INPGKRKASTDNLMQQPPLKKLATDGSMGVMPINSLAVDKQGLTGGFSTSTAVGSSDVGL 480
Query: 1625 SSSLRQVTNDKNSGGSSRREKSEARPPKMSISLAQAWKEDMDAGHLLASLFEFFGESILP 1804
SS +Q+ ++ SGG R + R K S LAQAWK D++AG L ASLFE+FGES+
Sbjct: 481 SSMSQQLASENISGG---RREVGTRALKASAVLAQAWK-DVNAGQLSASLFEYFGESMFC 536
Query: 1805 FTPAAELSFFL 1837
FTP+ ELS FL
Sbjct: 537 FTPSPELSLFL 547
>ref|XP_003518649.1| PREDICTED: transcription initiation factor TFIID subunit 6-like
[Glycine max]
Length = 544
Score = 781 bits (2018), Expect = 0.0
Identities = 390/545 (71%), Positives = 450/545 (82%)
Frame = +2
Query: 203 MSIVPKETIEVIAQSIGINNLSPDVALALAPDVEYRMREIMQEAIKCMRHSKRTILTADD 382
MSIVPKETIEVIAQSIGINNLS DVALA+APDVEYRMR+IMQEAIKCMRHSKRT LTADD
Sbjct: 1 MSIVPKETIEVIAQSIGINNLSHDVALAVAPDVEYRMRQIMQEAIKCMRHSKRTTLTADD 60
Query: 383 VDSALNLRNVEPIYGFASGDPLRFKRAVGHKDLFYIDDKDVEFKDVIEAPIPKAPLDTAV 562
VD+ALNL+NVEPIYGFASG PLRFKRAVGH+DLFYIDDKDV+ KDVIEA +PKAPLDTAV
Sbjct: 61 VDAALNLKNVEPIYGFASGGPLRFKRAVGHRDLFYIDDKDVDLKDVIEASLPKAPLDTAV 120
Query: 563 VAHWLAIEGVQPAIPENAPVEALVAPSDNRKSEQKEEGLPVEIKLPIKHVLSRELQLYFD 742
HWLAIEGVQPAIPENAPVE + APSD +K EQK++ LPV+IKLP+KHVLSRELQLYFD
Sbjct: 121 TCHWLAIEGVQPAIPENAPVEVISAPSDVKKHEQKDDNLPVDIKLPVKHVLSRELQLYFD 180
Query: 743 KITDLTVSRSDSVLFKEALASLATDSGLHPLVPYFTYYISDEVTRSLNNFPLLFALMRVV 922
K+ +LT+S SDSVLFKEAL SLATDSGLHPLVPYFT +I+DEV+R LNNFPLLFALMRVV
Sbjct: 181 KVAELTLSESDSVLFKEALVSLATDSGLHPLVPYFTCFIADEVSRGLNNFPLLFALMRVV 240
Query: 923 RSLLQNPHIHIEPYLHQLMPSVITCLVAKRLGNRFSDNHWELRNFTANLVTSICKRFGHV 1102
SLLQNPHI IEPYLHQLMPSV+TCLVAKRLG R +DNHWELR+FTA+LV SICKRFGHV
Sbjct: 241 SSLLQNPHIQIEPYLHQLMPSVVTCLVAKRLGTRLADNHWELRDFTAHLVASICKRFGHV 300
Query: 1103 YHNLQPRVTRTLLHAFLDPTKSLTQHYGAIQGLSALGPSVIRLLILPNLEPYLQLLEPEI 1282
Y NLQ R+T+TLL+AFLDP K+LTQHYGAIQGL ALGP+V+RLL+LPNLE Y+QLLEPE+
Sbjct: 301 YSNLQSRLTKTLLNAFLDPKKALTQHYGAIQGLGALGPNVVRLLLLPNLETYMQLLEPEM 360
Query: 1283 LLEKQKNEMKRHEAWRVYGSLLCASGQCMYDRLKLFPSLLSPPTRTVWRTTQRVATTMPN 1462
LLEKQKNE+KRHEAWRVYG+LL A+GQC+YDRLK+FP+ SPP VW+T +V T+
Sbjct: 361 LLEKQKNELKRHEAWRVYGALLRAAGQCIYDRLKIFPTFPSPPLHAVWKTNSKVLTSSTY 420
Query: 1463 KRKMSQEHLGQQPSLKRVATEGSIGALPATSMQTDMQLAADGFPATSVDSSMAPSSSLRQ 1642
KRK S + L QQP LK+ AT+G +G Q A G A+S DS + SSS Q
Sbjct: 421 KRKASPDQLEQQPPLKKAATDGEVGVDLMNFSPVHKQEEA-GTQASSADSIIGTSSSSAQ 479
Query: 1643 VTNDKNSGGSSRREKSEARPPKMSISLAQAWKEDMDAGHLLASLFEFFGESILPFTPAAE 1822
+ N+ G R ++ + + K S +L Q WK+++++G L SLFE FGE IL F A E
Sbjct: 480 MKNETTLDGELRGKRGDTQALKTSAALTQVWKDELNSGRTLVSLFELFGEGILSFIKAPE 539
Query: 1823 LSFFL 1837
+ FL
Sbjct: 540 MYMFL 544
>ref|XP_002320500.1| predicted protein [Populus trichocarpa] gi|222861273|gb|EEE98815.1|
predicted protein [Populus trichocarpa]
Length = 532
Score = 771 bits (1991), Expect = 0.0
Identities = 384/545 (70%), Positives = 454/545 (83%)
Frame = +2
Query: 203 MSIVPKETIEVIAQSIGINNLSPDVALALAPDVEYRMREIMQEAIKCMRHSKRTILTADD 382
MSIV KETIEVIAQSIGI+NLS DVAL LAPDVE+RMR+IMQEAIKCMRHSKRT LT DD
Sbjct: 1 MSIVAKETIEVIAQSIGISNLSEDVALTLAPDVEFRMRQIMQEAIKCMRHSKRTRLTTDD 60
Query: 383 VDSALNLRNVEPIYGFASGDPLRFKRAVGHKDLFYIDDKDVEFKDVIEAPIPKAPLDTAV 562
VD ALNL NVEPIYGFASG L+FKRA+GH+DLFY+DDKD++FKDVIEAP+PKAPLDTAV
Sbjct: 61 VDGALNLTNVEPIYGFASGGALQFKRAIGHRDLFYVDDKDIDFKDVIEAPLPKAPLDTAV 120
Query: 563 VAHWLAIEGVQPAIPENAPVEALVAPSDNRKSEQKEEGLPVEIKLPIKHVLSRELQLYFD 742
V HWLAIEGVQPAIPENAP+E + PSD + SEQ +E PV+IKLP+KHVLSRELQLYFD
Sbjct: 121 VCHWLAIEGVQPAIPENAPLEVIAPPSDGKISEQNDE-FPVDIKLPVKHVLSRELQLYFD 179
Query: 743 KITDLTVSRSDSVLFKEALASLATDSGLHPLVPYFTYYISDEVTRSLNNFPLLFALMRVV 922
KITDLTV RSDSVLFKEAL SLATDSGLHPL+PYFTY+I+DEV R LN++ LLFALMRVV
Sbjct: 180 KITDLTVRRSDSVLFKEALVSLATDSGLHPLIPYFTYFIADEVARGLNDYSLLFALMRVV 239
Query: 923 RSLLQNPHIHIEPYLHQLMPSVITCLVAKRLGNRFSDNHWELRNFTANLVTSICKRFGHV 1102
SLLQNPHIHIEPYLHQLMPSV+TCLVA++LGNRF+DNHWELR+FTANLV SICKRFGHV
Sbjct: 240 WSLLQNPHIHIEPYLHQLMPSVVTCLVARKLGNRFADNHWELRDFTANLVASICKRFGHV 299
Query: 1103 YHNLQPRVTRTLLHAFLDPTKSLTQHYGAIQGLSALGPSVIRLLILPNLEPYLQLLEPEI 1282
Y++LQ R+T+TLL+A LDP +SLTQHYGAIQGL+ALGP+V+RLL+LPNL+PYLQLLEPE+
Sbjct: 300 YNSLQTRLTKTLLNALLDPKRSLTQHYGAIQGLAALGPNVVRLLLLPNLKPYLQLLEPEM 359
Query: 1283 LLEKQKNEMKRHEAWRVYGSLLCASGQCMYDRLKLFPSLLSPPTRTVWRTTQRVATTMPN 1462
LLEKQKNEMKRHEAW VYG+LLCA+GQ +YDRLK+FP+L+S P V RT ++V T P+
Sbjct: 360 LLEKQKNEMKRHEAWHVYGALLCAAGQSIYDRLKMFPALMSHPACAVLRTNEKVVTKRPD 419
Query: 1463 KRKMSQEHLGQQPSLKRVATEGSIGALPATSMQTDMQLAADGFPATSVDSSMAPSSSLRQ 1642
KRK S EH+ +QP K++AT+G + DMQ+ P DS S+S
Sbjct: 420 KRKASMEHM-EQPPPKKIATDGPV----------DMQVEPIA-PVPLGDSKTGLSTSSEH 467
Query: 1643 VTNDKNSGGSSRREKSEARPPKMSISLAQAWKEDMDAGHLLASLFEFFGESILPFTPAAE 1822
N +G ++++K +++ K S L+Q WK+D+++GHLL SLFE FGESIL F P+ E
Sbjct: 468 TPNYSEAGSRNQKDKGDSQAIKTSAILSQVWKDDLNSGHLLVSLFELFGESILSFIPSPE 527
Query: 1823 LSFFL 1837
+S FL
Sbjct: 528 MSLFL 532