BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00005968
         (907 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN61344.1| hypothetical protein VITISV_022201 [Vitis vinifera]    97   7e-18
ref|XP_002281594.1| PREDICTED: cleavage and polyadenylation spec...    96   9e-18
ref|XP_003546247.1| PREDICTED: cleavage and polyadenylation spec...    84   6e-14
ref|XP_003534764.1| PREDICTED: cleavage and polyadenylation spec...    80   7e-13
ref|XP_002523201.1| conserved hypothetical protein [Ricinus comm...    79   2e-12

>emb|CAN61344.1| hypothetical protein VITISV_022201 [Vitis vinifera]
          Length = 299

 Score = 96.7 bits (239), Expect = 7e-18
 Identities = 49/86 (56%), Positives = 59/86 (68%), Gaps = 2/86 (2%)
 Frame = -1

Query: 841 DANWAKKDQRRPTNDWNERHSAGPDQGKGNEMESTSGARDDETRYQSGFKGQSKDLFGGG 662
           + N  K+DQR P ND N+R+S G DQG+G +M       DDET+Y  G K Q  D FGGG
Sbjct: 217 NTNRTKRDQRTPVNDRNDRYSGGSDQGRGQDM----AGPDDETQYLQGLKSQQDDQFGGG 272

Query: 661 N--RSGDSESEDEAPRRSRHVEGKKR 590
           N  R+ +SESEDEAPRRSRH EGKK+
Sbjct: 273 NSFRNDESESEDEAPRRSRHGEGKKK 298


>ref|XP_002281594.1| PREDICTED: cleavage and polyadenylation specificity factor
           CPSF30-like [Vitis vinifera]
          Length = 673

 Score = 96.3 bits (238), Expect = 9e-18
 Identities = 49/84 (58%), Positives = 58/84 (69%), Gaps = 2/84 (2%)
 Frame = -1

Query: 835 NWAKKDQRRPTNDWNERHSAGPDQGKGNEMESTSGARDDETRYQSGFKGQSKDLFGGGN- 659
           N  K+DQR P ND N+R+S G DQG+G +M       DDET+Y  G K Q  D FGGGN 
Sbjct: 593 NRTKRDQRTPVNDRNDRYSGGSDQGRGQDM----AGPDDETQYLQGLKSQQDDQFGGGNS 648

Query: 658 -RSGDSESEDEAPRRSRHVEGKKR 590
            R+ +SESEDEAPRRSRH EGKK+
Sbjct: 649 FRNDESESEDEAPRRSRHGEGKKK 672


>ref|XP_003546247.1| PREDICTED: cleavage and polyadenylation specificity factor
           CPSF30-like [Glycine max]
          Length = 691

 Score = 83.6 bits (205), Expect = 6e-14
 Identities = 45/81 (55%), Positives = 55/81 (67%), Gaps = 1/81 (1%)
 Frame = -1

Query: 829 AKKDQRRPTNDWNERHSAGPDQGKGNEMESTSGARDDETRYQSGFKGQSKDLFGGGN-RS 653
           AK+DQR  T D N+R  +G +QGK  +M S SG  DD+ +YQ G+KG   D     N R+
Sbjct: 610 AKRDQR--TADRNDRFGSGSEQGKSQDMLSQSGGPDDDAQYQQGYKGNQDDHPAVNNFRN 667

Query: 652 GDSESEDEAPRRSRHVEGKKR 590
            DSESEDEAPRRSRH EGKK+
Sbjct: 668 DDSESEDEAPRRSRHGEGKKK 688


>ref|XP_003534764.1| PREDICTED: cleavage and polyadenylation specificity factor
           CPSF30-like [Glycine max]
          Length = 681

 Score = 80.1 bits (196), Expect = 7e-13
 Identities = 43/80 (53%), Positives = 52/80 (65%)
 Frame = -1

Query: 829 AKKDQRRPTNDWNERHSAGPDQGKGNEMESTSGARDDETRYQSGFKGQSKDLFGGGNRSG 650
           AK+DQR  T D N+R  +G +QGK  +M S SG  DD+ +YQ G+KG   D         
Sbjct: 607 AKRDQR--TADRNDRFGSGSEQGKSQDMLSQSGGPDDDPQYQQGYKGNQDD------HPD 658

Query: 649 DSESEDEAPRRSRHVEGKKR 590
           DSESEDEAPRRSRH EGKK+
Sbjct: 659 DSESEDEAPRRSRHGEGKKK 678


>ref|XP_002523201.1| conserved hypothetical protein [Ricinus communis]
           gi|223537608|gb|EEF39232.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 702

 Score = 78.6 bits (192), Expect = 2e-12
 Identities = 49/88 (55%), Positives = 57/88 (64%), Gaps = 4/88 (4%)
 Frame = -1

Query: 826 KKDQRRPTNDWNERHSAGPDQGKGNEMESTSGARDDETRYQS-GFKGQSKDLFGGGN--R 656
           K+DQR   ND   R+S G DQG+     +T+G  DDE RYQ  G K   +D FG GN  R
Sbjct: 615 KRDQRMTAND---RYSTGSDQGR-----NTAGEPDDEARYQQEGLKASHEDQFGAGNSFR 666

Query: 655 SGDSESEDEAPRRSRHVEG-KKR*GLEG 575
           + +SESEDEAPRRSRH EG KKR G EG
Sbjct: 667 NDESESEDEAPRRSRHGEGKKKRRGSEG 694