BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00005855
         (1268 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI33123.3| unnamed protein product [Vitis vinifera]              509   e-142
ref|XP_002262798.2| PREDICTED: transcription initiation factor I...   501   e-139
ref|XP_002519387.1| tfiif-alpha, putative [Ricinus communis] gi|...   481   e-133
ref|XP_002308775.1| predicted protein [Populus trichocarpa] gi|2...   460   e-127
ref|XP_003546179.1| PREDICTED: transcription initiation factor I...   460   e-127

>emb|CBI33123.3| unnamed protein product [Vitis vinifera]
          Length = 539

 Score =  509 bits (1312), Expect = e-142
 Identities = 267/407 (65%), Positives = 287/407 (70%), Gaps = 4/407 (0%)
 Frame = -2

Query: 1213 MSFDLHLKAQCGGCGSQKDLYGSNCKHLTLCINCGKKMAENRNKCYDCGVPVTRLIREYN 1034
            MSFDL LK  C GCGS  DLYGSNCKH+TLC++CGK MAEN  KCYDCG PVTRLIREYN
Sbjct: 1    MSFDLMLKPSCSGCGSTTDLYGSNCKHMTLCLSCGKTMAENHGKCYDCGTPVTRLIREYN 60

Query: 1033 VRTNASTEKNYFIGRFVSGLP-FSKKKTAE-KWCIQKEGLQGRNVTDALREKYKNKPWLL 860
            VRTN+S +KNYFIGRFV+GLP FSKKK A+ KW + KEGLQGR V+DALREKYKNKPWLL
Sbjct: 61   VRTNSSGDKNYFIGRFVTGLPGFSKKKNADNKWSLHKEGLQGRQVSDALREKYKNKPWLL 120

Query: 859  EDETGQFQYHGQLEGSQSATYYLLVMQQGKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEK 680
            EDETGQ+QYHGQLEGSQSATYYLL+MQ GKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEK
Sbjct: 121  EDETGQYQYHGQLEGSQSATYYLLMMQ-GKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEK 179

Query: 679  MKNRRKTADGYQRWMMKAANNGPAAFGETEKFDEKDTGGAT--GRGNKKATADDDEGNAS 506
            MKNRR+TADGYQRWMMKAANNGPAAFGE EK D+K+TGGA   GRG KK T D++EGN S
Sbjct: 180  MKNRRRTADGYQRWMMKAANNGPAAFGEVEKLDDKETGGAAGGGRGRKKQTGDEEEGNVS 239

Query: 505  XXXXXXXXXXXXRKNRLGLNKXXXXXXXXXXXXXXXXXXXXXXXXXXDWEHEEIFTDDDE 326
                        RKNRLGLNK                          DWEHEEIFTDDDE
Sbjct: 240  DKAEEDEEEEAERKNRLGLNKRSGDDDEEGPRGGDHDLDDDDIEKGDDWEHEEIFTDDDE 299

Query: 325  AVGNDPEEREDLAPEVPAPPEIKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNXX 146
            AVGNDPEEREDLAPEVPAPPEIKQ                                 +  
Sbjct: 300  AVGNDPEEREDLAPEVPAPPEIKQDEEDEDDSNEEEGGLSKSGKELKKLLGKAAGMND-- 357

Query: 145  XXXXXXXXXXXXXEIGMSPVLAPKQKDTPKEEPIDNSPSKTVAGSVK 5
                         EIG+SPVLAPKQKD PKEEP DNSP K+   S +
Sbjct: 358  SDAEDDDDDEEEDEIGLSPVLAPKQKDVPKEEPADNSPMKSATASAR 404


>ref|XP_002262798.2| PREDICTED: transcription initiation factor IIF subunit alpha-like
            [Vitis vinifera]
          Length = 534

 Score =  501 bits (1289), Expect = e-139
 Identities = 262/401 (65%), Positives = 282/401 (70%), Gaps = 4/401 (0%)
 Frame = -2

Query: 1195 LKAQCGGCGSQKDLYGSNCKHLTLCINCGKKMAENRNKCYDCGVPVTRLIREYNVRTNAS 1016
            LK  C GCGS  DLYGSNCKH+TLC++CGK MAEN  KCYDCG PVTRLIREYNVRTN+S
Sbjct: 2    LKPSCSGCGSTTDLYGSNCKHMTLCLSCGKTMAENHGKCYDCGTPVTRLIREYNVRTNSS 61

Query: 1015 TEKNYFIGRFVSGLP-FSKKKTAE-KWCIQKEGLQGRNVTDALREKYKNKPWLLEDETGQ 842
             +KNYFIGRFV+GLP FSKKK A+ KW + KEGLQGR V+DALREKYKNKPWLLEDETGQ
Sbjct: 62   GDKNYFIGRFVTGLPGFSKKKNADNKWSLHKEGLQGRQVSDALREKYKNKPWLLEDETGQ 121

Query: 841  FQYHGQLEGSQSATYYLLVMQQGKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRRK 662
            +QYHGQLEGSQSATYYLL+MQ GKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRR+
Sbjct: 122  YQYHGQLEGSQSATYYLLMMQ-GKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRRR 180

Query: 661  TADGYQRWMMKAANNGPAAFGETEKFDEKDTGGAT--GRGNKKATADDDEGNASXXXXXX 488
            TADGYQRWMMKAANNGPAAFGE EK D+K+TGGA   GRG KK T D++EGN S      
Sbjct: 181  TADGYQRWMMKAANNGPAAFGEVEKLDDKETGGAAGGGRGRKKQTGDEEEGNVSDKAEED 240

Query: 487  XXXXXXRKNRLGLNKXXXXXXXXXXXXXXXXXXXXXXXXXXDWEHEEIFTDDDEAVGNDP 308
                  RKNRLGLNK                          DWEHEEIFTDDDEAVGNDP
Sbjct: 241  EEEEAERKNRLGLNKRSGDDDEEGPRGGDHDLDDDDIEKGDDWEHEEIFTDDDEAVGNDP 300

Query: 307  EEREDLAPEVPAPPEIKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNXXXXXXXX 128
            EEREDLAPEVPAPPEIKQ                                 +        
Sbjct: 301  EEREDLAPEVPAPPEIKQDEEDEDDSNEEEGGLSKSGKELKKLLGKAAGMND--SDAEDD 358

Query: 127  XXXXXXXEIGMSPVLAPKQKDTPKEEPIDNSPSKTVAGSVK 5
                   EIG+SPVLAPKQKD PKEEP DNSP K+   S +
Sbjct: 359  DDDEEEDEIGLSPVLAPKQKDVPKEEPADNSPMKSATASAR 399


>ref|XP_002519387.1| tfiif-alpha, putative [Ricinus communis] gi|223541454|gb|EEF43004.1|
            tfiif-alpha, putative [Ricinus communis]
          Length = 533

 Score =  481 bits (1238), Expect = e-133
 Identities = 255/406 (62%), Positives = 283/406 (69%), Gaps = 3/406 (0%)
 Frame = -2

Query: 1210 SFDLHLKAQCGGCGSQKDLYGSNCKHLTLCINCGKKMAENRNKCYDCGVPVTRLIREYNV 1031
            + DL LK  C GCGS  DLYGSNCKH+TLC++CGK MAEN  KC+DCG  V+RLIREYNV
Sbjct: 3    TMDLMLKGSCSGCGSTTDLYGSNCKHMTLCLSCGKTMAENHAKCFDCGATVSRLIREYNV 62

Query: 1030 RTNASTEKNYFIGRFVSGLP-FSKKKTAE-KWCIQKEGLQGRNVTDALREKYKNKPWLLE 857
            R ++S++KNYFIGRFV+GLP FSKKK AE KW +QKEGLQGR +TDALREKYKN+PWLLE
Sbjct: 63   RASSSSDKNYFIGRFVTGLPSFSKKKNAENKWSLQKEGLQGRQLTDALREKYKNRPWLLE 122

Query: 856  DETGQFQYHGQLEGSQSATYYLLVMQQGKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKM 677
            DETGQFQY G LEGSQSATYYLL++Q GKEFVAIPA SWYNFNKVAQYKQLTLEEAEEKM
Sbjct: 123  DETGQFQYQGHLEGSQSATYYLLILQ-GKEFVAIPASSWYNFNKVAQYKQLTLEEAEEKM 181

Query: 676  KNRRKTADGYQRWMMKAANNGPAAFGETEKFDEKDTGGATGRGNKKATADDDEGNASXXX 497
            +NRRKTADGY+RWMMKAANNGPAAFGE EK D+KD+G A+GRG KKA  DD+EGN S   
Sbjct: 182  RNRRKTADGYERWMMKAANNGPAAFGEVEKLDDKDSGAASGRGRKKAAGDDEEGNVSDRG 241

Query: 496  XXXXXXXXXRKNRLGLNKXXXXXXXXXXXXXXXXXXXXXXXXXXDWEHEEIFTDDDEAVG 317
                     RKNRLGLNK                          DWEHEEIFTDDDEAVG
Sbjct: 242  DEDEEEEAARKNRLGLNKRGGDDDEEGPRGGDHDIDDDDIEKGDDWEHEEIFTDDDEAVG 301

Query: 316  NDPEEREDLAPEVPAPPEIKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNXXXXX 137
            ND EEREDLAPEVPAPPEIKQ                                LN     
Sbjct: 302  NDREEREDLAPEVPAPPEIKQ--DEDDEDEENEEGGLSKSGKELKKLLGRAGGLNDSDAE 359

Query: 136  XXXXXXXXXXEIGMSPVLAPKQKDTPKEEPIDNSPSKTV-AGSVKG 2
                      ++ +SPVLAPKQ  TPKEEP DNSP+K + + S KG
Sbjct: 360  DDDDDDDMDEDVSISPVLAPKQ--TPKEEPADNSPAKPMTSASSKG 403


>ref|XP_002308775.1| predicted protein [Populus trichocarpa] gi|222854751|gb|EEE92298.1|
            predicted protein [Populus trichocarpa]
          Length = 541

 Score =  460 bits (1184), Expect = e-127
 Identities = 254/411 (61%), Positives = 273/411 (66%), Gaps = 7/411 (1%)
 Frame = -2

Query: 1213 MSFDLHLKAQCGGCGSQKDLYGSNCKHLTLCINCGKKMAENRNKCYDCGVPVTRLIREYN 1034
            MSFDL L+  C GCGS  DLYGSNCKH+TLC+ CGK MAENR KC+DCG  VTRLIREYN
Sbjct: 1    MSFDLQLQPSCSGCGSTTDLYGSNCKHMTLCLTCGKTMAENRGKCFDCGAIVTRLIREYN 60

Query: 1033 VRTNASTEKNYFIGRFVSGLP-FSKKKTAE-KWCIQKEGLQGRNVTDALREKYKNKPWLL 860
            VR + S+EKNYFIGRFV+GLP FSKKK AE KW + KEG+ GR +TD LREK+KNKPWLL
Sbjct: 61   VRASTSSEKNYFIGRFVTGLPGFSKKKNAENKWSLLKEGIHGRQITDTLREKFKNKPWLL 120

Query: 859  EDETGQFQYHGQLEGSQSATYYLLVMQQGKEFVAIPAGSW--YNFNKVAQYKQLTLEEAE 686
            EDETGQFQY G LEGSQSATYYLL+M  GKEFVAIPAGSW  YNFNKVA YKQLTLEEAE
Sbjct: 121  EDETGQFQYQGHLEGSQSATYYLLMM-SGKEFVAIPAGSWYGYNFNKVAHYKQLTLEEAE 179

Query: 685  EKMKNRRKTADGYQRWMMKAANNGPAAFGETEKFDEKDTGGATGR-GNKKATADDDEGNA 509
            EKMKNRRKTADGY+RWMMKAA+NG AAFGE EK D+KD   A GR G KKA  DDDEGN 
Sbjct: 180  EKMKNRRKTADGYERWMMKAAHNGAAAFGEVEKPDDKDGVSAGGRGGRKKANGDDDEGNV 239

Query: 508  SXXXXXXXXXXXXRKNRLGLNKXXXXXXXXXXXXXXXXXXXXXXXXXXDWEHEEIFTDDD 329
            S            RK+RLGLNK                          DWEHEEIFTDDD
Sbjct: 240  SDKGEEDEEEEAGRKSRLGLNKGGGDDDEEGPRGGDLDMDDDDIEKGDDWEHEEIFTDDD 299

Query: 328  EAVGNDPEEREDLAPEVPAPPEIKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNX 149
            EAV  DPEEREDLAPEVPAPPEIKQ                                 + 
Sbjct: 300  EAVAIDPEEREDLAPEVPAPPEIKQDEEDEDEENEEGGLSKSGKELKKLLGKANGLNESD 359

Query: 148  XXXXXXXXXXXXXXEIGMSPVLAPKQKD-TPKEEPIDNSPSK-TVAGSVKG 2
                             +SPVLAPKQKD  PKEEP DNSP+K T  GS KG
Sbjct: 360  AEDDDDDDDMDD----DISPVLAPKQKDAVPKEEPADNSPAKPTPPGSAKG 406


>ref|XP_003546179.1| PREDICTED: transcription initiation factor IIF subunit alpha-like
            [Glycine max]
          Length = 539

 Score =  460 bits (1183), Expect = e-127
 Identities = 244/409 (59%), Positives = 275/409 (67%), Gaps = 5/409 (1%)
 Frame = -2

Query: 1213 MSFDLHLKAQCGGCGSQKDLYGSNCKHLTLCINCGKKMAENRNKCYDCGVPVTRLIREYN 1034
            MS DL LK+ C GCGS  DLYGSNCKH+TLC++CGK MAE R KC+DCG  +TRLIREYN
Sbjct: 1    MSTDLQLKSSCSGCGSTTDLYGSNCKHMTLCLSCGKTMAEKRAKCFDCGATLTRLIREYN 60

Query: 1033 VRTNASTEKNYFIGRFVSGLP-FSKKKTAE-KWCIQKEGLQGRNVTDALREKYKNKPWLL 860
            VR +++ +KNYFIGRF++GLP FSKKK+AE KW +QK+GL GR +TD LREKYKNKPWLL
Sbjct: 61   VRASSTNDKNYFIGRFINGLPDFSKKKSAENKWSLQKDGLHGRQITDTLREKYKNKPWLL 120

Query: 859  EDETGQFQYHGQLEGSQSATYYLLVMQQGKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEK 680
            EDETGQ Q+ G LEGSQSATYYLL M++ KEFVAIPAGSWYNFNKVAQYKQLTLEEAEEK
Sbjct: 121  EDETGQSQFQGHLEGSQSATYYLL-MKERKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEK 179

Query: 679  MKNRRKTADGYQRWMMKAANNGPAAFGETEKFDEKD--TGGATGRGNKKATADDDEGNAS 506
            MKNR+KTADGYQRWMMKAANNGPAAFGE  KFD+K+  TGG   R   K T +DDEG+ S
Sbjct: 180  MKNRKKTADGYQRWMMKAANNGPAAFGEHGKFDDKESNTGGVRIR---KKTGEDDEGHVS 236

Query: 505  XXXXXXXXXXXXRKNRLGLNKXXXXXXXXXXXXXXXXXXXXXXXXXXDWEHEEIFTDDDE 326
                        RK+RLGLNK                          DWEHEEIFTDDDE
Sbjct: 237  DKGEEDEEEESERKSRLGLNKRAGDDDEEGPRGGDHDLDDDDVEKGDDWEHEEIFTDDDE 296

Query: 325  AVGNDPEEREDLAPEVPAPPEIKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNXX 146
            AVGNDPEEREDLAPEVPAPPEIKQ                                    
Sbjct: 297  AVGNDPEEREDLAPEVPAPPEIKQDEEEEDEDNEEGGGLSKSGKELKKLLGKASGLNESD 356

Query: 145  XXXXXXXXXXXXXEIGMSPVLAPKQKDTPKEEPIDNSPSK-TVAGSVKG 2
                         ++G+ P +A KQKD  KEEP+DNSPSK T  G  +G
Sbjct: 357  AEDDDDDDDDVEDDVGVPPAIATKQKDALKEEPVDNSPSKPTATGPARG 405