BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00005835
         (932 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284709.1| PREDICTED: eukaryotic translation initiation...   235   1e-59
ref|XP_002519577.1| Eukaryotic translation initiation factor 3 s...   233   4e-59
ref|XP_002888479.1| hypothetical protein ARALYDRAFT_475711 [Arab...   228   1e-57
ref|NP_564865.1| Translation initiation factor eIF3 subunit [Ara...   219   7e-55
ref|XP_002305897.1| predicted protein [Populus trichocarpa] gi|2...   218   2e-54

>ref|XP_002284709.1| PREDICTED: eukaryotic translation initiation factor 3 subunit J
           [Vitis vinifera] gi|296088327|emb|CBI36772.3| unnamed
           protein product [Vitis vinifera]
          Length = 222

 Score =  235 bits (599), Expect = 1e-59
 Identities = 122/223 (54%), Positives = 147/223 (65%), Gaps = 1/223 (0%)
 Frame = +3

Query: 48  MSDWEDEPVSPVPKKALIETNWDDEDAEDDGIKESWEDXXXXXXXXXXXXXXXXKSTKKA 227
           M DWEDEP++P+ KK   +  WDDED +DD +KESWED                K  KK 
Sbjct: 1   MEDWEDEPITPLGKKEEPKNKWDDEDLDDDNVKESWEDEDEPAPAPVIQPPAE-KPPKKP 59

Query: 228 GAKSTXXXXXXXXXXXXXXLDPVAEKLRQQRLVEEADYKSTTELFARKGDEKSLDTFIPK 407
             K+T              LDPVAEK+RQQRL+EEADYKSTTELFA++GDEK+LD+FIPK
Sbjct: 60  VEKATEKKGKAVEAVTEVTLDPVAEKIRQQRLIEEADYKSTTELFAKRGDEKTLDSFIPK 119

Query: 408 SENDFLEYAELVAHKLRPYEKSFHYINLLKATMRLSMTSLKGAEAKEVASSITAIVN-XX 584
           SE+DF+EYAEL++HKLR YEKSFHYI LLKA MRLSM SLK A+AKE+ASS+TAI N   
Sbjct: 120 SESDFVEYAELISHKLRSYEKSFHYIGLLKAVMRLSMASLKAADAKEIASSVTAIANEKL 179

Query: 585 XXXXXXXXXXXXXXXXXXQVLVDKPDDDLAASGYEALDDYDFM 713
                             Q+ VDKPDDD+  + Y+ +DDYDFM
Sbjct: 180 KAEKEANTGKKKIGAKKKQLHVDKPDDDVVVNAYDDIDDYDFM 222


>ref|XP_002519577.1| Eukaryotic translation initiation factor 3 subunit, putative
           [Ricinus communis] gi|223541235|gb|EEF42788.1|
           Eukaryotic translation initiation factor 3 subunit,
           putative [Ricinus communis]
          Length = 222

 Score =  233 bits (595), Expect = 4e-59
 Identities = 124/223 (55%), Positives = 146/223 (65%), Gaps = 1/223 (0%)
 Frame = +3

Query: 48  MSDWEDEPVSPVPKKALIETNWDDEDAEDDGIKESWEDXXXXXXXXXXXXXXXXKSTKKA 227
           M DWEDE + P+  K   ++ WDDED +D+ +KESWED                K+TKK 
Sbjct: 1   MEDWEDEQIPPLILKEQPKSKWDDEDVDDNDVKESWEDEDEPAPEPVAKPPPE-KATKKP 59

Query: 228 GAKSTXXXXXXXXXXXXXX-LDPVAEKLRQQRLVEEADYKSTTELFARKGDEKSLDTFIP 404
             KS                LDPVAEKLRQQRLVEEADY+STTELF ++GDEK+LD FIP
Sbjct: 60  VTKSIEKKGKTVVAKEESQPLDPVAEKLRQQRLVEEADYRSTTELFGKRGDEKTLDNFIP 119

Query: 405 KSENDFLEYAELVAHKLRPYEKSFHYINLLKATMRLSMTSLKGAEAKEVASSITAIVNXX 584
           KSE+DFLEYAELV+HKLRPYEKSFHYI LLKA MRLSMT++K A+AK+VASS+TAI N  
Sbjct: 120 KSESDFLEYAELVSHKLRPYEKSFHYIGLLKAVMRLSMTAMKAADAKDVASSVTAIANEK 179

Query: 585 XXXXXXXXXXXXXXXXXXQVLVDKPDDDLAASGYEALDDYDFM 713
                             Q+ VDKPD+DL    Y+ALDDYDFM
Sbjct: 180 LKAEKEANAGKKKGGKKKQLHVDKPDEDLVVDSYDALDDYDFM 222


>ref|XP_002888479.1| hypothetical protein ARALYDRAFT_475711 [Arabidopsis lyrata subsp.
           lyrata] gi|297334320|gb|EFH64738.1| hypothetical protein
           ARALYDRAFT_475711 [Arabidopsis lyrata subsp. lyrata]
          Length = 222

 Score =  228 bits (582), Expect = 1e-57
 Identities = 112/222 (50%), Positives = 144/222 (64%)
 Frame = +3

Query: 48  MSDWEDEPVSPVPKKALIETNWDDEDAEDDGIKESWEDXXXXXXXXXXXXXXXXKSTKKA 227
           M DWEDE ++P+P K  +++NWDDED + + IKESWED                K+ KKA
Sbjct: 1   MDDWEDEQIAPLPAKVELKSNWDDEDVDVNEIKESWEDDDEEPAQPPVVKPAPEKAPKKA 60

Query: 228 GAKSTXXXXXXXXXXXXXXLDPVAEKLRQQRLVEEADYKSTTELFARKGDEKSLDTFIPK 407
             K+               LDP+ EKLRQQRLVEEADY+ST ELF  K +EK+LD FIPK
Sbjct: 61  APKTVEKKGKAIEVPKEEPLDPIVEKLRQQRLVEEADYRSTAELFGVKDEEKNLDMFIPK 120

Query: 408 SENDFLEYAELVAHKLRPYEKSFHYINLLKATMRLSMTSLKGAEAKEVASSITAIVNXXX 587
           SE+DFLEYAE+++H+++PYEKS+HYI LLK  MRLS+T++K A+ K+VASSIT I N   
Sbjct: 121 SESDFLEYAEMISHRIKPYEKSYHYIALLKTIMRLSLTNMKAADVKDVASSITTIANEKL 180

Query: 588 XXXXXXXXXXXXXXXXXQVLVDKPDDDLAASGYEALDDYDFM 713
                            Q++VDKPDDDL A  Y+A+DD+DFM
Sbjct: 181 KAEKEAAAGKKKGGKKKQLIVDKPDDDLVAGPYDAMDDFDFM 222


>ref|NP_564865.1| Translation initiation factor eIF3 subunit [Arabidopsis thaliana]
           gi|334183669|ref|NP_001185326.1| Translation initiation
           factor eIF3 subunit [Arabidopsis thaliana]
           gi|12322607|gb|AAG51301.1|AC026480_8 unknown protein
           [Arabidopsis thaliana] gi|17380828|gb|AAL36101.1|
           unknown protein [Arabidopsis thaliana]
           gi|20259027|gb|AAM14229.1| unknown protein [Arabidopsis
           thaliana] gi|332196337|gb|AEE34458.1| Translation
           initiation factor eIF3 subunit [Arabidopsis thaliana]
           gi|332196338|gb|AEE34459.1| Translation initiation
           factor eIF3 subunit [Arabidopsis thaliana]
          Length = 226

 Score =  219 bits (558), Expect = 7e-55
 Identities = 109/226 (48%), Positives = 145/226 (64%), Gaps = 4/226 (1%)
 Frame = +3

Query: 48  MSDWEDEPVSPVPKKALIETNWDDEDAEDDGIKESWEDXXXXXXXXXXXXXXXXKSTKKA 227
           M DWEDE ++P+P K  +++NWDDED +++ IK+SWED                K+ KKA
Sbjct: 1   MDDWEDEKIAPLPAKVELKSNWDDEDVDENEIKDSWEDDDDEPAQPPVINPAPEKAPKKA 60

Query: 228 GAKSTXXXXXXXXXXXXXX----LDPVAEKLRQQRLVEEADYKSTTELFARKGDEKSLDT 395
             K+                   LDP+AEKLRQQRLVEEADY++T ELF  K D+K+LD 
Sbjct: 61  APKTVEKKGKAVEVPKEAPKEKPLDPIAEKLRQQRLVEEADYRATAELFGVKDDDKNLDM 120

Query: 396 FIPKSENDFLEYAELVAHKLRPYEKSFHYINLLKATMRLSMTSLKGAEAKEVASSITAIV 575
           FIPKSE+DFLEYAE+++H+++PYEKS+HYI LLK  MRLS+T++K A+ K+VASSIT I 
Sbjct: 121 FIPKSESDFLEYAEMISHRIKPYEKSYHYIALLKTIMRLSLTNMKAADVKDVASSITTIA 180

Query: 576 NXXXXXXXXXXXXXXXXXXXXQVLVDKPDDDLAASGYEALDDYDFM 713
           N                    Q++VDK +DDL A  Y+A+DD+DFM
Sbjct: 181 NEKLKAEKEAAAGKKKGGKKKQLIVDKANDDLVAGPYDAMDDFDFM 226


>ref|XP_002305897.1| predicted protein [Populus trichocarpa] gi|222848861|gb|EEE86408.1|
           predicted protein [Populus trichocarpa]
          Length = 222

 Score =  218 bits (554), Expect = 2e-54
 Identities = 116/223 (52%), Positives = 143/223 (64%), Gaps = 1/223 (0%)
 Frame = +3

Query: 48  MSDWEDEPVSPVPKKALIETNWDDEDAEDDGIKESWEDXXXXXXXXXXXXXXXXKSTKKA 227
           M DWEDE V P+  K   ++ WDDED ++D +KESWED                 + KK 
Sbjct: 1   MEDWEDEQVPPLVAKDQPKSKWDDEDVDEDDVKESWEDEDEPDPAPVVKPPPEM-APKKP 59

Query: 228 GAKSTXXXXXXXXXXXXXXLDPVAEKLRQQRLVEEADYKSTTELFARKGDEKSLDTFIPK 407
             KST              LDP+AEKLRQQRLVEEAD++ST ELF +K DEKSLD+FIPK
Sbjct: 60  AVKSTEKKGNTTDVVKDQPLDPLAEKLRQQRLVEEADFRSTAELFGKKDDEKSLDSFIPK 119

Query: 408 SENDFLEYAELVAHKLRPYEKSFHYINLLKATMRLSMTSLKGAEAKEVASSITAIVN-XX 584
           SE+DFLEYAEL+++KLRP+EKS+HYI+LLKA MRLSMTS+K A+AKEV++S++AI N   
Sbjct: 120 SESDFLEYAELISNKLRPFEKSYHYIHLLKAVMRLSMTSMKAADAKEVSTSVSAIANEKI 179

Query: 585 XXXXXXXXXXXXXXXXXXQVLVDKPDDDLAASGYEALDDYDFM 713
                             Q+ V KP DDL    Y+ALDDYDFM
Sbjct: 180 KAEKEANTGKKKTGGKKKQLHVGKPGDDLEGDSYDALDDYDFM 222