BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00005814
         (991 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002328427.1| predicted protein [Populus trichocarpa] gi|2...   179   8e-69
ref|XP_003591075.1| DNA excision repair protein ERCC-1 [Medicago...   176   1e-68
ref|XP_002281063.2| PREDICTED: DNA excision repair protein ERCC-...   181   2e-68
ref|XP_002512344.1| excision repair cross-complementing 1 ercc1,...   176   2e-67
ref|NP_187172.1| DNA excision repair protein ERCC-1 [Arabidopsis...   178   6e-67

>ref|XP_002328427.1| predicted protein [Populus trichocarpa] gi|222838142|gb|EEE76507.1|
           predicted protein [Populus trichocarpa]
          Length = 382

 Score =  179 bits (455), Expect(2) = 8e-69
 Identities = 86/104 (82%), Positives = 91/104 (87%)
 Frame = -3

Query: 581 QNRNAILVSHRQKGNPLLKHIRNVKWVFADIICDYLLGQNSCALYLSLRYHLLHPDYLYY 402
           Q+RNAILVSHRQKGNPLLKHIRNVKW FAD++CDYLLGQ+SCALYLSLRYHLLHPDYLYY
Sbjct: 92  QSRNAILVSHRQKGNPLLKHIRNVKWAFADVVCDYLLGQSSCALYLSLRYHLLHPDYLYY 151

Query: 401 RIRELQKNFKLRXXXXXXXXXXXVKPILEVTKTALLHDCTLLCA 270
           RIRELQKN KLR           VKP+LEVTKTALLHDCTLLCA
Sbjct: 152 RIRELQKNCKLRVVLCHVDVEDVVKPLLEVTKTALLHDCTLLCA 195



 Score =  108 bits (269), Expect(2) = 8e-69
 Identities = 50/56 (89%), Positives = 54/56 (96%)
 Frame = -2

Query: 171 WSLEECGRYLETIKVYENKPADILQGQMDTDYLSRLNHALTAVRRVNKTDVVTLGS 4
           WSLEECGRYLETIK+YENKPAD++QGQMDTDY SRL+HALT VRRVNKTDVVTLGS
Sbjct: 196 WSLEECGRYLETIKMYENKPADLIQGQMDTDYSSRLHHALTTVRRVNKTDVVTLGS 251


>ref|XP_003591075.1| DNA excision repair protein ERCC-1 [Medicago truncatula]
           gi|355480123|gb|AES61326.1| DNA excision repair protein
           ERCC-1 [Medicago truncatula]
          Length = 401

 Score =  176 bits (445), Expect(2) = 1e-68
 Identities = 83/103 (80%), Positives = 91/103 (88%)
 Frame = -3

Query: 581 QNRNAILVSHRQKGNPLLKHIRNVKWVFADIICDYLLGQNSCALYLSLRYHLLHPDYLYY 402
           QNRNAILVS+RQKGNPLLKHIRNV+W FAD++CD+LLGQ+SCALYLSLRYHLLHPDYLY+
Sbjct: 106 QNRNAILVSNRQKGNPLLKHIRNVRWTFADVVCDFLLGQSSCALYLSLRYHLLHPDYLYH 165

Query: 401 RIRELQKNFKLRXXXXXXXXXXXVKPILEVTKTALLHDCTLLC 273
           RIRELQKNFKLR           VKP+LEVTKTALLHDCTLLC
Sbjct: 166 RIRELQKNFKLRVVLCHVDVEDVVKPLLEVTKTALLHDCTLLC 208



 Score =  111 bits (277), Expect(2) = 1e-68
 Identities = 52/57 (91%), Positives = 54/57 (94%)
 Frame = -2

Query: 171 WSLEECGRYLETIKVYENKPADILQGQMDTDYLSRLNHALTAVRRVNKTDVVTLGSN 1
           WSLEECGRYLETIKVYENKPADI+QGQMDTDYLSRL HALT VR VNKTDVVTLG+N
Sbjct: 210 WSLEECGRYLETIKVYENKPADIIQGQMDTDYLSRLTHALTTVRHVNKTDVVTLGTN 266


>ref|XP_002281063.2| PREDICTED: DNA excision repair protein ERCC-1-like [Vitis vinifera]
           gi|296088298|emb|CBI36743.3| unnamed protein product
           [Vitis vinifera]
          Length = 398

 Score =  181 bits (460), Expect(2) = 2e-68
 Identities = 86/104 (82%), Positives = 92/104 (88%)
 Frame = -3

Query: 581 QNRNAILVSHRQKGNPLLKHIRNVKWVFADIICDYLLGQNSCALYLSLRYHLLHPDYLYY 402
           Q+RNAILVSHRQKGNPLLKHIRNV+W FADI+CDYLLGQNSCALYLSLRYHLLHPDYLYY
Sbjct: 103 QSRNAILVSHRQKGNPLLKHIRNVRWDFADIVCDYLLGQNSCALYLSLRYHLLHPDYLYY 162

Query: 401 RIRELQKNFKLRXXXXXXXXXXXVKPILEVTKTALLHDCTLLCA 270
           RIRELQKNFKLR           +KP+LEVT+TALLHDCTLLCA
Sbjct: 163 RIRELQKNFKLRVVLCHVDVEDVIKPLLEVTRTALLHDCTLLCA 206



 Score =  104 bits (260), Expect(2) = 2e-68
 Identities = 50/56 (89%), Positives = 51/56 (91%)
 Frame = -2

Query: 171 WSLEECGRYLETIKVYENKPADILQGQMDTDYLSRLNHALTAVRRVNKTDVVTLGS 4
           WSLEECGRYLETIKVYENK ADI+QGQ DTDYLSRL HALT VR VNKTDVVTLGS
Sbjct: 207 WSLEECGRYLETIKVYENKSADIIQGQTDTDYLSRLTHALTTVRHVNKTDVVTLGS 262


>ref|XP_002512344.1| excision repair cross-complementing 1 ercc1, putative [Ricinus
           communis] gi|223548305|gb|EEF49796.1| excision repair
           cross-complementing 1 ercc1, putative [Ricinus communis]
          Length = 392

 Score =  176 bits (445), Expect(2) = 2e-67
 Identities = 82/102 (80%), Positives = 89/102 (87%)
 Frame = -3

Query: 575 RNAILVSHRQKGNPLLKHIRNVKWVFADIICDYLLGQNSCALYLSLRYHLLHPDYLYYRI 396
           RN+ILVSHRQKGNPLLKHIRNV+W FAD++CDYLLGQN C+LYLSLRYHLLHPDYLYYRI
Sbjct: 100 RNSILVSHRQKGNPLLKHIRNVRWAFADVVCDYLLGQNCCSLYLSLRYHLLHPDYLYYRI 159

Query: 395 RELQKNFKLRXXXXXXXXXXXVKPILEVTKTALLHDCTLLCA 270
           RELQKN+KLR           VKP+LEVTKTALLHDCTLLCA
Sbjct: 160 RELQKNYKLRVVLCHVDVEDVVKPLLEVTKTALLHDCTLLCA 201



 Score =  107 bits (268), Expect(2) = 2e-67
 Identities = 49/56 (87%), Positives = 53/56 (94%)
 Frame = -2

Query: 171 WSLEECGRYLETIKVYENKPADILQGQMDTDYLSRLNHALTAVRRVNKTDVVTLGS 4
           WSLEECGRYLETIK+YENKPAD++QGQMDTDYLSRL HALT +R VNKTDVVTLGS
Sbjct: 202 WSLEECGRYLETIKMYENKPADLIQGQMDTDYLSRLTHALTTIRHVNKTDVVTLGS 257


>ref|NP_187172.1| DNA excision repair protein ERCC-1 [Arabidopsis thaliana]
           gi|55976606|sp|Q9MA98.1|ERCC1_ARATH RecName: Full=DNA
           excision repair protein ERCC-1; Short=AtERCC1;
           Short=AtRAD10; AltName: Full=Ultraviolet hypersensitive
           7 gi|6729031|gb|AAF27027.1|AC009177_17 putative
           nucleotide repair protein [Arabidopsis thaliana]
           gi|9800490|gb|AAF99316.1|AF276082_1 ERCC1 [Arabidopsis
           thaliana] gi|15215614|gb|AAK91352.1| AT3g05210/T12H1_18
           [Arabidopsis thaliana] gi|21435979|gb|AAM51569.1|
           AT3g05210/T12H1_18 [Arabidopsis thaliana]
           gi|21618171|gb|AAM67221.1| putative nucleotide repair
           protein [Arabidopsis thaliana]
           gi|332640684|gb|AEE74205.1| DNA excision repair protein
           ERCC-1 [Arabidopsis thaliana]
          Length = 410

 Score =  178 bits (451), Expect(2) = 6e-67
 Identities = 87/104 (83%), Positives = 91/104 (87%)
 Frame = -3

Query: 581 QNRNAILVSHRQKGNPLLKHIRNVKWVFADIICDYLLGQNSCALYLSLRYHLLHPDYLYY 402
           QNRNAILVSHRQKGNPLLKHIRNVKWVF+DII DY+LGQNSCALYLSLRYHLLHPDYLY+
Sbjct: 121 QNRNAILVSHRQKGNPLLKHIRNVKWVFSDIIPDYVLGQNSCALYLSLRYHLLHPDYLYF 180

Query: 401 RIRELQKNFKLRXXXXXXXXXXXVKPILEVTKTALLHDCTLLCA 270
           RIRELQKNFKL            VKP+LEVTKTALLHDCTLLCA
Sbjct: 181 RIRELQKNFKLSVVLCHVDVEDTVKPLLEVTKTALLHDCTLLCA 224



 Score =  103 bits (257), Expect(2) = 6e-67
 Identities = 46/56 (82%), Positives = 53/56 (94%)
 Frame = -2

Query: 171 WSLEECGRYLETIKVYENKPADILQGQMDTDYLSRLNHALTAVRRVNKTDVVTLGS 4
           WS+ EC RYLETIKVYENKPAD++QGQMDTDYLSRLNH+LT++R VNK+DVVTLGS
Sbjct: 225 WSMTECARYLETIKVYENKPADLIQGQMDTDYLSRLNHSLTSIRHVNKSDVVTLGS 280