BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00005746
         (3493 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002281998.2| PREDICTED: pentatricopeptide repeat-containi...  1258   0.0  
ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...  1154   0.0  
ref|XP_004141438.1| PREDICTED: pentatricopeptide repeat-containi...  1153   0.0  
ref|XP_003603234.1| Pentatricopeptide repeat-containing protein ...  1138   0.0  
ref|XP_003527761.1| PREDICTED: pentatricopeptide repeat-containi...  1128   0.0  

>ref|XP_002281998.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170
            [Vitis vinifera]
          Length = 1580

 Score = 1258 bits (3256), Expect = 0.0
 Identities = 615/957 (64%), Positives = 765/957 (79%)
 Frame = +1

Query: 109  ILQNSITQRNLPLGKCTHARIIRFGDYSNRFLTNNLINMYSKCGVLDYARKLFDQSPNRD 288
            +L+ +I+  NL LGKCTHARI+  G   + FL+NNL+ MYSKCG L  AR++FD +P RD
Sbjct: 627  LLRTAISTHNLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERD 686

Query: 289  LVTWNSILAGYAVSAETDDSKIFDGFCLFRGLRRCEELSPTRLTLAPVLKMALFSGCISI 468
            LVTWN+IL  YA S +++D    +G  LFR L R    S TR+TLAPVLK+ L SGC+  
Sbjct: 687  LVTWNAILGAYAASVDSNDGNAQEGLHLFR-LLRASLGSTTRMTLAPVLKLCLNSGCLWA 745

Query: 469  SEAIHCYAAKVGLDFDVFISGILVNIYTKVGWVEEARRLFDEMPEKDVVMWNVMLKAYVQ 648
            +E +H YA K+GL++DVF+SG LVNIY+K G + +AR LFD M E+DVV+WN+MLK YVQ
Sbjct: 746  AEGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQ 805

Query: 649  SGAFDTEVFRLFSEFHSSGLRPDDISVNCVLRELSKGVASEELSKSIDQVRAYAVKLSLL 828
             G  + E F+LFSEFH SGLRPD+ SV  +L  +S+ V  +E     DQV+AYA KLSL 
Sbjct: 806  LG-LEKEAFQLFSEFHRSGLRPDEFSVQLILNGVSE-VNWDEGKWLADQVQAYAAKLSLS 863

Query: 829  NDVRDVFKWNKTMSEYINAGENRAALECFLEMTRSNVECDKVTFVIVLSSAMGTNDLKVG 1008
            +D  DVF WNK +SE + AG+N  A+ECF+ M   N++ D VT ++VL++  GT+DL++G
Sbjct: 864  DDNPDVFCWNKKLSECLWAGDNWGAIECFVNMNGLNIDYDAVTLLVVLAAVAGTDDLELG 923

Query: 1009 QQIQCRVVKSGFDFDISIANSLINMYAKMGCLNYARAIFSEMEELDLISWNSMISSCVQG 1188
            +Q+    VKSG D D+S+ANSL+NMY+KMGC  +AR +F++M+ LDLISWNSMISSC Q 
Sbjct: 924  KQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQS 983

Query: 1189 GLGKESLNLFLDLLCEGLRPDQFTLASVLRACSSVPHGFYLGRQVHVHAVKLGCIGDVFV 1368
             L +ES+NLF+DLL EGL+PD FTLASVLRACSS+  G  + RQ+HVHA+K G I D FV
Sbjct: 984  SLEEESVNLFIDLLHEGLKPDHFTLASVLRACSSLIDGLNISRQIHVHALKTGNIADSFV 1043

Query: 1369 STALIDVYGKSGRMEEAELVYKIREGFDLGSCNAMMAGYINNQDSSKALSLFSLIHKDGK 1548
            +T LIDVY KSG+MEEAE +++ ++  DL   NAMM GYI   D  KAL LFSLIHK G+
Sbjct: 1044 ATTLIDVYSKSGKMEEAEFLFQNKDDLDLACWNAMMFGYIIGNDGKKALELFSLIHKSGE 1103

Query: 1549 KSNQFTLATAINACGSSVVLEQGKQIQAHVIKLGFDSDLCVSSGILDMYVKCGDMKGASL 1728
            KS+Q TLATA  ACG  V+L+QGKQI AH IK GFDSDL V+SGILDMY+KCGDM  A +
Sbjct: 1104 KSDQITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGI 1163

Query: 1729 LFDGICEPDDVVWTAMISGCVENGDEDHALWLYHQMRHSGILPDEYTFATLIKACSCLTA 1908
            +F+ I  PDDV WT+MISGCV+NG+ED AL +YH+MR S ++PDEYTFATLIKA SC+TA
Sbjct: 1164 VFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTA 1223

Query: 1909 FEQGKQIHANVIKLECLSDPFVGTSLIDMYAKCGSISESYTLFKRMNVTNIALWNAMMVG 2088
             EQG+Q+HANVIKL+C+SDPFVGTSL+DMYAKCG+I ++Y LFK+MNV NIALWNAM+VG
Sbjct: 1224 LEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVG 1283

Query: 2089 LAQHGNGEEALNLFREMRIQGVVPDKISFIGILSACSYSGLVSEAYGHFDSMYKDYGIEP 2268
            LAQHGN EEA+NLF+ M+  G+ PD++SFIGILSACS++GL SEAY +  SM  DYGIEP
Sbjct: 1284 LAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEP 1343

Query: 2269 EIEHYSCLVDVLGRAGLLEDAEKLISNMPFAPSASMYRALLGACWVQKNAEVGKRIASQL 2448
            EIEHYSCLVD LGRAGL+++A+K+I  MPF  SAS+ RALLGAC +Q + E GKR+A++L
Sbjct: 1344 EIEHYSCLVDALGRAGLVQEADKVIETMPFKASASINRALLGACRIQGDVETGKRVAARL 1403

Query: 2449 LALDPLDSSAYVLMSNIYAAANQWNQVADARKMMKTRNVKKDPGYSWIDVKNKVHLFVVD 2628
             AL+P DS+AYVL+SNIYAAAN+W+ V DARKMMK +NVKKDPG+SWIDVKN +HLFVVD
Sbjct: 1404 FALEPFDSAAYVLLSNIYAAANRWDDVTDARKMMKRKNVKKDPGFSWIDVKNMLHLFVVD 1463

Query: 2629 DNSHPQAAAVISKVEELIETIKKEGYVPDTDFLLHDVENEDKERALYYHSEKLAIAYGLI 2808
            D SHPQA  +  KVEE+++TI+++GYVPDT+F+L DVE+E+KER+LYYHSEKLAIAYGLI
Sbjct: 1464 DRSHPQADIIYDKVEEMMKTIREDGYVPDTEFVLLDVEDEEKERSLYYHSEKLAIAYGLI 1523

Query: 2809 STPPSTTIRVIKNLRVCGDCHNAIKYISRTVEREIVVRDANRFHCFKKGTCSCGDYW 2979
            STP STTIRVIKNLRVCGDCHNAIKYIS+  EREIV+RDANRFH F+ G CSCGDYW
Sbjct: 1524 STPASTTIRVIKNLRVCGDCHNAIKYISKVFEREIVLRDANRFHHFRDGVCSCGDYW 1580


>ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g33170-like [Cucumis sativus]
          Length = 1573

 Score = 1154 bits (2984), Expect = 0.0
 Identities = 578/960 (60%), Positives = 733/960 (76%), Gaps = 3/960 (0%)
 Frame = +1

Query: 109  ILQNSITQRNLPLGKCTHARIIRFGDYSNRFLTNNLINMYSKCGVLDYARKLFDQSPNRD 288
            +L+++I   +L LGK  HARI+  GD  +R+LTNNLI MYSKCG L  AR++FD+S +RD
Sbjct: 617  LLRSAIAMADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRD 676

Query: 289  LVTWNSILAGYAVSAETDDSKIFDGFCLFRGLRRCEELSPTRLTLAPVLKMALFSGCISI 468
            LVTWNSILA YA  A++    + +GF LF GL R    S TRLTLAP+LK+ L SG + +
Sbjct: 677  LVTWNSILAAYAQFADSSYENVLEGFRLF-GLLREFGFSITRLTLAPLLKLCLLSGFVQV 735

Query: 469  SEAIHCYAAKVGLDFDVFISGILVNIYTKVGWVEEARRLFDEMPEKDVVMWNVMLKAYVQ 648
            SE +H YA K+G + D+F+SG LVNIY K G V +AR LFD+MPE+D V+WNVMLKAYV+
Sbjct: 736  SETVHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVE 795

Query: 649  SGAFDTEVFRLFSEFHSSGLRPDDISVNCVLRELSKGVASEELSKSIDQVRAYAVKLSLL 828
            + +F  E  R FS FH SG  PD  +++CV+  ++  V++    +  +QV+AYA+K+   
Sbjct: 796  N-SFQDEALRFFSAFHRSGFXPDFSNLHCVIGGVNSDVSNNR-KRHAEQVKAYAMKMFPF 853

Query: 829  NDVRDVFKWNKTMSEYINAGENRAALECFLEMTRSNVECDKVTFVIVLSSAMGTNDLKVG 1008
            +   ++F WNK ++E+++AG+  AA++CF  + RS +  D VT VI+LS+A+G +DL +G
Sbjct: 854  DQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLG 913

Query: 1009 QQIQCRVVKSGFDFDISIANSLINMYAKMGCLNYARAIFSEMEELDLISWNSMISSCVQG 1188
            +QI   V+KS F   + ++NSL+NMY+K G +  A   F    ELDLISWN+MISS  Q 
Sbjct: 914  EQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQN 973

Query: 1189 GLGKESLNLFLDLLCEGLRPDQFTLASVLRACSSVPHGFY--LGRQVHVHAVKLGCIGDV 1362
             L  E++  F DLL +GL+PDQFTLASVLRACS+   G Y  LG QVHV+A+K G I D 
Sbjct: 974  NLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGIINDS 1033

Query: 1363 FVSTALIDVYGKSGRMEEAELVYKIREGFDLGSCNAMMAGYINNQDSSKALSLFSLIHKD 1542
            FVSTALID+Y K G+M+EAE +   +  FDL S NA+M GYI +  S KAL  FSL+H+ 
Sbjct: 1034 FVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEM 1093

Query: 1543 GKKSNQFTLATAINACGSSVVLEQGKQIQAHVIKLGFDSDLCVSSGILDMYVKCGDMKGA 1722
            G   ++ TLATAI A G  + L+QGKQIQA+ IKLGF++DL VSSG+LDMY+KCGDM  A
Sbjct: 1094 GIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNA 1153

Query: 1723 SLLFDGICEPDDVVWTAMISGCVENGDEDHALWLYHQMRHSGILPDEYTFATLIKACSCL 1902
              LF  I  PD+V WT MISG +ENGDEDHAL +YH MR SG+ PDEYTFATLIKA SCL
Sbjct: 1154 LELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCL 1213

Query: 1903 TAFEQGKQIHANVIKLECLSDPFVGTSLIDMYAKCGSISESYTLFKRMNVTNIALWNAMM 2082
            TA EQGKQIHANV+KL+   D FVGTSL+DMY KCGS+ ++Y +F++M+V  +  WNAM+
Sbjct: 1214 TALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAML 1273

Query: 2083 VGLAQHGNGEEALNLFREMRIQGVVPDKISFIGILSACSYSGLVSEAYGHFDSMYKDYGI 2262
            +GLAQHG+ +EALNLFR M+  G+ PDK++FIG+LSACS+SGL SEAY +FD+M+K YGI
Sbjct: 1274 LGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYGI 1333

Query: 2263 EPEIEHYSCLVDVLGRAGLLEDAEKLISNMPFAPSASMYRALLGACWVQKNAEVGKRIAS 2442
             PEIEHYSCLVD LGRAG +++AE +I++MPF  SASMYRALLGAC  + +AE  KR+A 
Sbjct: 1334 TPEIEHYSCLVDALGRAGRIQEAENVIASMPFKASASMYRALLGACRTKGDAETAKRVAD 1393

Query: 2443 QLLALDPLDSSAYVLMSNIYAAANQWNQVADARKMMKTRNVKKDPGYSWIDVKNKVHLFV 2622
            +LLALDP DSSAYVL+SNIYAA+ QW+ V DAR MMK +NVKKDPG+SWIDVKNKVHLFV
Sbjct: 1394 KLLALDPSDSSAYVLLSNIYAASRQWDDVTDARNMMKLKNVKKDPGFSWIDVKNKVHLFV 1453

Query: 2623 VDDNSHPQAAAVISKVEELIETIKKEG-YVPDTDFLLHDVENEDKERALYYHSEKLAIAY 2799
            VDD SHPQA+ +  K+E+L++ I++EG YVPDTDF L DVE E+KERALYYHSEKLAIA+
Sbjct: 1454 VDDRSHPQASLIYEKIEDLMKRIREEGSYVPDTDFTLLDVEEEEKERALYYHSEKLAIAF 1513

Query: 2800 GLISTPPSTTIRVIKNLRVCGDCHNAIKYISRTVEREIVVRDANRFHCFKKGTCSCGDYW 2979
            GLISTPPS TIRVIKNLRVCGDCH+AIK IS+  +REIV+RDANRFH F+ GTCSCGDYW
Sbjct: 1514 GLISTPPSATIRVIKNLRVCGDCHSAIKCISKLTQREIVLRDANRFHHFRNGTCSCGDYW 1573



 Score =  229 bits (585), Expect = 3e-57
 Identities = 190/700 (27%), Positives = 316/700 (45%), Gaps = 24/700 (3%)
 Frame = +1

Query: 367  CLFRGLRRCEELSPTRLTLAPVLKMALFSGCISISEAIHCYAAKVGLDFDVFISGILVNI 546
            C F    R   LS +      +L+ A+    + + +  H      G   D +++  L+ +
Sbjct: 596  CPFLLFCRFSSLSSSSSQWFSLLRSAIAMADLKLGKRAHARIVTSGDLPDRYLTNNLITM 655

Query: 547  YTKVGWVEEARRLFDEMPEKDVVMWNVMLKAYVQ--SGAFDT--EVFRLFSEFHSSGLRP 714
            Y+K G +  AR++FD+  ++D+V WN +L AY Q    +++   E FRLF      G   
Sbjct: 656  YSKCGSLCSARQVFDKSSDRDLVTWNSILAAYAQFADSSYENVLEGFRLFGLLREFGFS- 714

Query: 715  DDISVNCVLRELSKGVASEELSKSIDQVRAYAVKLSLLNDVRDVFKWNKTMSEYINAGEN 894
                    L  L K        +  + V  YAVK+       D+F     ++ Y   G  
Sbjct: 715  ---ITRLTLAPLLKLCLLSGFVQVSETVHGYAVKIGF---ELDLFVSGALVNIYCKYGLV 768

Query: 895  RAALECFLEMTRSNVECDKVTFVIVLSSAMGTNDLKVGQQIQCRVVKSGFDFDISIANSL 1074
              A   F +M     E D V + ++L + +  +      +      +SGF  D S     
Sbjct: 769  GQARLLFDKMP----ERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFXPDFS----- 819

Query: 1075 INMYAKMGCLN----------------YARAIFSEMEELDLISWNSMISSCVQGGLGKES 1206
             N++  +G +N                YA  +F   +  ++ +WN  ++  +  G    +
Sbjct: 820  -NLHCVIGGVNSDVSNNRKRHAEQVKAYAMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAA 878

Query: 1207 LNLFLDLLCEGLRPDQFTLASVLRACSSVPHGFYLGRQVHVHAVKLGCIGDVFVSTALID 1386
            ++ F  LL   +  D  TL  +L A         LG Q+H   +K      V VS +L++
Sbjct: 879  IDCFKTLLRSTIGHDSVTLVIILSAAVGA-DDLDLGEQIHALVIKSSFAPVVPVSNSLMN 937

Query: 1387 VYGKSGRMEEAELVYKIREGFDLGSCNAMMAGYINNQDSSKALSLFSLIHKDGKKSNQFT 1566
            +Y K+G +  AE  +      DL S N M++ Y  N    +A+  F  + +DG K +QFT
Sbjct: 938  MYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFT 997

Query: 1567 LATAINACGSSVVLEQ---GKQIQAHVIKLGFDSDLCVSSGILDMYVKCGDMKGASLLFD 1737
            LA+ + AC +    E    G Q+  + IK G  +D  VS+ ++D+Y K G M  A  L  
Sbjct: 998  LASVLRACSTGDEGEYFTLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAEFLLH 1057

Query: 1738 GICEPDDVVWTAMISGCVENGDEDHALWLYHQMRHSGILPDEYTFATLIKACSCLTAFEQ 1917
            G  + D   W A++ G +++     AL  +  M   GI  DE T AT IKA  CL   +Q
Sbjct: 1058 GKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQ 1117

Query: 1918 GKQIHANVIKLECLSDPFVGTSLIDMYAKCGSISESYTLFKRMNVTNIALWNAMMVGLAQ 2097
            GKQI A  IKL   +D +V + ++DMY KCG +  +  LF  ++  +   W  M+ G  +
Sbjct: 1118 GKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIE 1177

Query: 2098 HGNGEEALNLFREMRIQGVVPDKISFIGILSACS-YSGLVSEAYGHFDSMYKDYGIEPEI 2274
            +G+ + AL+++  MR+ GV PD+ +F  ++ A S  + L      H + +  DY ++  +
Sbjct: 1178 NGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYSLDHFV 1237

Query: 2275 EHYSCLVDVLGRAGLLEDAEKLISNMPFAPSASMYRALLG 2394
               + LVD+  + G ++DA ++   M           LLG
Sbjct: 1238 G--TSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLG 1275


>ref|XP_004141438.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Cucumis sativus]
          Length = 1573

 Score = 1153 bits (2982), Expect = 0.0
 Identities = 578/960 (60%), Positives = 733/960 (76%), Gaps = 3/960 (0%)
 Frame = +1

Query: 109  ILQNSITQRNLPLGKCTHARIIRFGDYSNRFLTNNLINMYSKCGVLDYARKLFDQSPNRD 288
            +L+++I   +L LGK  HARI+  GD  +R+LTNNLI MYSKCG L  AR++FD+S +RD
Sbjct: 617  LLRSAIAMADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRD 676

Query: 289  LVTWNSILAGYAVSAETDDSKIFDGFCLFRGLRRCEELSPTRLTLAPVLKMALFSGCISI 468
            LVTWNSILA YA  A++    + +GF LF GL R    S TRLTLAP+LK+ L SG + +
Sbjct: 677  LVTWNSILAAYAQFADSSYENVLEGFRLF-GLLREFGFSITRLTLAPLLKLCLLSGFVQV 735

Query: 469  SEAIHCYAAKVGLDFDVFISGILVNIYTKVGWVEEARRLFDEMPEKDVVMWNVMLKAYVQ 648
            SE +H YA K+G + D+F+SG LVNIY K G V +AR LFD+MPE+D V+WNVMLKAYV+
Sbjct: 736  SETVHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVE 795

Query: 649  SGAFDTEVFRLFSEFHSSGLRPDDISVNCVLRELSKGVASEELSKSIDQVRAYAVKLSLL 828
            + +F  E  R FS FH SG  PD  +++CV+  ++  V++    +  +QV+AYA+K+   
Sbjct: 796  N-SFQDEALRFFSAFHRSGFFPDFSNLHCVIGGVNSDVSNNR-KRHAEQVKAYAMKMFPF 853

Query: 829  NDVRDVFKWNKTMSEYINAGENRAALECFLEMTRSNVECDKVTFVIVLSSAMGTNDLKVG 1008
            +   ++F WNK ++E+++AG+  AA++CF  + RS +  D VT VI+LS+A+G +DL +G
Sbjct: 854  DQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLG 913

Query: 1009 QQIQCRVVKSGFDFDISIANSLINMYAKMGCLNYARAIFSEMEELDLISWNSMISSCVQG 1188
            +QI   V+KS F   + ++NSL+NMY+K G +  A   F    ELDLISWN+MISS  Q 
Sbjct: 914  EQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQN 973

Query: 1189 GLGKESLNLFLDLLCEGLRPDQFTLASVLRACSSVPHGFY--LGRQVHVHAVKLGCIGDV 1362
             L  E++  F DLL +GL+PDQFTLASVLRACS+   G Y  LG QVHV+A+K G I D 
Sbjct: 974  NLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGIINDS 1033

Query: 1363 FVSTALIDVYGKSGRMEEAELVYKIREGFDLGSCNAMMAGYINNQDSSKALSLFSLIHKD 1542
            FVSTALID+Y K G+M+EAE +   +  FDL S NA+M GYI +  S KAL  FSL+H+ 
Sbjct: 1034 FVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEM 1093

Query: 1543 GKKSNQFTLATAINACGSSVVLEQGKQIQAHVIKLGFDSDLCVSSGILDMYVKCGDMKGA 1722
            G   ++ TLATAI A G  + L+QGKQIQA+ IKLGF++DL VSSG+LDMY+KCGDM  A
Sbjct: 1094 GIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNA 1153

Query: 1723 SLLFDGICEPDDVVWTAMISGCVENGDEDHALWLYHQMRHSGILPDEYTFATLIKACSCL 1902
              LF  I  PD+V WT MISG +ENGDEDHAL +YH MR SG+ PDEYTFATLIKA SCL
Sbjct: 1154 LELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCL 1213

Query: 1903 TAFEQGKQIHANVIKLECLSDPFVGTSLIDMYAKCGSISESYTLFKRMNVTNIALWNAMM 2082
            TA EQGKQIHANV+KL+   D FVGTSL+DMY KCGS+ ++Y +F++M+V  +  WNAM+
Sbjct: 1214 TALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAML 1273

Query: 2083 VGLAQHGNGEEALNLFREMRIQGVVPDKISFIGILSACSYSGLVSEAYGHFDSMYKDYGI 2262
            +GLAQHG+ +EALNLFR M+  G+ PDK++FIG+LSACS+SGL SEAY +FD+M+K YGI
Sbjct: 1274 LGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYGI 1333

Query: 2263 EPEIEHYSCLVDVLGRAGLLEDAEKLISNMPFAPSASMYRALLGACWVQKNAEVGKRIAS 2442
             PEIEHYSCLVD LGRAG +++AE +I++MPF  SASMYRALLGAC  + +AE  KR+A 
Sbjct: 1334 TPEIEHYSCLVDALGRAGRIQEAENVIASMPFKASASMYRALLGACRTKGDAETAKRVAD 1393

Query: 2443 QLLALDPLDSSAYVLMSNIYAAANQWNQVADARKMMKTRNVKKDPGYSWIDVKNKVHLFV 2622
            +LLALDP DSSAYVL+SNIYAA+ QW+ V DAR MMK +NVKKDPG+SWIDVKNKVHLFV
Sbjct: 1394 KLLALDPSDSSAYVLLSNIYAASRQWDDVTDARNMMKLKNVKKDPGFSWIDVKNKVHLFV 1453

Query: 2623 VDDNSHPQAAAVISKVEELIETIKKEG-YVPDTDFLLHDVENEDKERALYYHSEKLAIAY 2799
            VDD SHPQA+ +  K+E+L++ I++EG YVPDTDF L DVE E+KERALYYHSEKLAIA+
Sbjct: 1454 VDDRSHPQASLIYEKIEDLMKRIREEGSYVPDTDFTLLDVEEEEKERALYYHSEKLAIAF 1513

Query: 2800 GLISTPPSTTIRVIKNLRVCGDCHNAIKYISRTVEREIVVRDANRFHCFKKGTCSCGDYW 2979
            GLISTPPS TIRVIKNLRVCGDCH+AIK IS+  +REIV+RDANRFH F+ GTCSCGDYW
Sbjct: 1514 GLISTPPSATIRVIKNLRVCGDCHSAIKCISKLTQREIVLRDANRFHHFRNGTCSCGDYW 1573



 Score =  229 bits (583), Expect = 5e-57
 Identities = 190/700 (27%), Positives = 316/700 (45%), Gaps = 24/700 (3%)
 Frame = +1

Query: 367  CLFRGLRRCEELSPTRLTLAPVLKMALFSGCISISEAIHCYAAKVGLDFDVFISGILVNI 546
            C F    R   LS +      +L+ A+    + + +  H      G   D +++  L+ +
Sbjct: 596  CPFLLFCRFSSLSSSSSQWFSLLRSAIAMADLKLGKRAHARIVTSGDLPDRYLTNNLITM 655

Query: 547  YTKVGWVEEARRLFDEMPEKDVVMWNVMLKAYVQ--SGAFDT--EVFRLFSEFHSSGLRP 714
            Y+K G +  AR++FD+  ++D+V WN +L AY Q    +++   E FRLF      G   
Sbjct: 656  YSKCGSLCSARQVFDKSSDRDLVTWNSILAAYAQFADSSYENVLEGFRLFGLLREFGFS- 714

Query: 715  DDISVNCVLRELSKGVASEELSKSIDQVRAYAVKLSLLNDVRDVFKWNKTMSEYINAGEN 894
                    L  L K        +  + V  YAVK+       D+F     ++ Y   G  
Sbjct: 715  ---ITRLTLAPLLKLCLLSGFVQVSETVHGYAVKIGF---ELDLFVSGALVNIYCKYGLV 768

Query: 895  RAALECFLEMTRSNVECDKVTFVIVLSSAMGTNDLKVGQQIQCRVVKSGFDFDISIANSL 1074
              A   F +M     E D V + ++L + +  +      +      +SGF  D S     
Sbjct: 769  GQARLLFDKMP----ERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFFPDFS----- 819

Query: 1075 INMYAKMGCLN----------------YARAIFSEMEELDLISWNSMISSCVQGGLGKES 1206
             N++  +G +N                YA  +F   +  ++ +WN  ++  +  G    +
Sbjct: 820  -NLHCVIGGVNSDVSNNRKRHAEQVKAYAMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAA 878

Query: 1207 LNLFLDLLCEGLRPDQFTLASVLRACSSVPHGFYLGRQVHVHAVKLGCIGDVFVSTALID 1386
            ++ F  LL   +  D  TL  +L A         LG Q+H   +K      V VS +L++
Sbjct: 879  IDCFKTLLRSTIGHDSVTLVIILSAAVGA-DDLDLGEQIHALVIKSSFAPVVPVSNSLMN 937

Query: 1387 VYGKSGRMEEAELVYKIREGFDLGSCNAMMAGYINNQDSSKALSLFSLIHKDGKKSNQFT 1566
            +Y K+G +  AE  +      DL S N M++ Y  N    +A+  F  + +DG K +QFT
Sbjct: 938  MYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFT 997

Query: 1567 LATAINACGSSVVLEQ---GKQIQAHVIKLGFDSDLCVSSGILDMYVKCGDMKGASLLFD 1737
            LA+ + AC +    E    G Q+  + IK G  +D  VS+ ++D+Y K G M  A  L  
Sbjct: 998  LASVLRACSTGDEGEYFTLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAEFLLH 1057

Query: 1738 GICEPDDVVWTAMISGCVENGDEDHALWLYHQMRHSGILPDEYTFATLIKACSCLTAFEQ 1917
            G  + D   W A++ G +++     AL  +  M   GI  DE T AT IKA  CL   +Q
Sbjct: 1058 GKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQ 1117

Query: 1918 GKQIHANVIKLECLSDPFVGTSLIDMYAKCGSISESYTLFKRMNVTNIALWNAMMVGLAQ 2097
            GKQI A  IKL   +D +V + ++DMY KCG +  +  LF  ++  +   W  M+ G  +
Sbjct: 1118 GKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIE 1177

Query: 2098 HGNGEEALNLFREMRIQGVVPDKISFIGILSACS-YSGLVSEAYGHFDSMYKDYGIEPEI 2274
            +G+ + AL+++  MR+ GV PD+ +F  ++ A S  + L      H + +  DY ++  +
Sbjct: 1178 NGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYSLDHFV 1237

Query: 2275 EHYSCLVDVLGRAGLLEDAEKLISNMPFAPSASMYRALLG 2394
               + LVD+  + G ++DA ++   M           LLG
Sbjct: 1238 G--TSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLG 1275


>ref|XP_003603234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
            gi|355492282|gb|AES73485.1| Pentatricopeptide
            repeat-containing protein [Medicago truncatula]
          Length = 973

 Score = 1138 bits (2944), Expect = 0.0
 Identities = 572/960 (59%), Positives = 723/960 (75%), Gaps = 3/960 (0%)
 Frame = +1

Query: 109  ILQNSITQRNLPLGKCTHARIIRFGDYSNRFLTNNLINMYSKCGVLDYARKLFDQSP--N 282
            IL+++I   +L LGK THA I+  G   +R++TNNLI MY+KCG L  ARKLFD +P  +
Sbjct: 19   ILRHAIADSDLILGKRTHAVIVTSGLNPDRYVTNNLITMYAKCGSLFSARKLFDITPQSD 78

Query: 283  RDLVTWNSILAGYAVSAETDD-SKIFDGFCLFRGLRRCEELSPTRLTLAPVLKMALFSGC 459
            RDLVT+N+ILA YA + E  D  K  + F +FR LR+   L+ TR TL+P+ K+ L  G 
Sbjct: 79   RDLVTYNAILAAYAHTGELHDVEKTHEAFHIFRLLRQSVMLT-TRHTLSPLFKLCLLYGS 137

Query: 460  ISISEAIHCYAAKVGLDFDVFISGILVNIYTKVGWVEEARRLFDEMPEKDVVMWNVMLKA 639
             S SEA+  YA K+GL +DVF++G LVNIY K   + EAR LFD MP +DVV+WNVM+KA
Sbjct: 138  PSASEALQGYAVKIGLQWDVFVAGALVNIYAKFQRIREARVLFDRMPVRDVVLWNVMMKA 197

Query: 640  YVQSGAFDTEVFRLFSEFHSSGLRPDDISVNCVLRELSKGVASEELSKSIDQVRAYAVKL 819
            YV+ GA D EV  LFS FH SGLRPD +SV  +L  + K    E   + ++QVRAYA KL
Sbjct: 198  YVEMGAGD-EVLGLFSAFHRSGLRPDCVSVRTILMGVGKKTVFE---RELEQVRAYATKL 253

Query: 820  SLLNDVRDVFKWNKTMSEYINAGENRAALECFLEMTRSNVECDKVTFVIVLSSAMGTNDL 999
             + +D  DV  WNKT+S Y+ AGE   A++CF +M +S V CD +T++++LS     N L
Sbjct: 254  FVCDDDSDVTVWNKTLSSYLQAGEGWEAVDCFRDMIKSRVPCDSLTYIVILSVVASLNHL 313

Query: 1000 KVGQQIQCRVVKSGFDFDISIANSLINMYAKMGCLNYARAIFSEMEELDLISWNSMISSC 1179
            ++G+QI   VV+ G+D  +S+ANS INMY K G +NYAR +F +M+E+DLISWN++IS C
Sbjct: 314  ELGKQIHGAVVRFGWDQFVSVANSAINMYVKAGSVNYARRMFGQMKEVDLISWNTVISGC 373

Query: 1180 VQGGLGKESLNLFLDLLCEGLRPDQFTLASVLRACSSVPHGFYLGRQVHVHAVKLGCIGD 1359
             + GL + SL LF+DLL  GL PDQFT+ SVLRACSS+   + +GRQVH  A+K G + D
Sbjct: 374  ARSGLEECSLRLFIDLLRSGLLPDQFTITSVLRACSSLEESYCVGRQVHTCALKAGIVLD 433

Query: 1360 VFVSTALIDVYGKSGRMEEAELVYKIREGFDLGSCNAMMAGYINNQDSSKALSLFSLIHK 1539
             FVSTALIDVY K G+MEEAEL++  ++GFDL S NAMM G+  + +  +AL LFSL+H+
Sbjct: 434  SFVSTALIDVYSKGGKMEEAELLFHNQDGFDLASWNAMMHGFTVSDNYREALRLFSLMHE 493

Query: 1540 DGKKSNQFTLATAINACGSSVVLEQGKQIQAHVIKLGFDSDLCVSSGILDMYVKCGDMKG 1719
             G+K++Q T A A  A G  V L+QGKQI A VIK+ F  DL V SGILDMY+KCG+MK 
Sbjct: 494  RGEKADQITFANAAKAAGCLVRLQQGKQIHAVVIKMRFHYDLFVISGILDMYLKCGEMKS 553

Query: 1720 ASLLFDGICEPDDVVWTAMISGCVENGDEDHALWLYHQMRHSGILPDEYTFATLIKACSC 1899
            A  +F+ I  PDDV WT +ISGCVENG+E+ AL+ YHQMR +G+ PDEYTFATL+KACS 
Sbjct: 554  ARKVFNQIPSPDDVAWTTVISGCVENGEEEQALFTYHQMRLAGVQPDEYTFATLVKACSL 613

Query: 1900 LTAFEQGKQIHANVIKLECLSDPFVGTSLIDMYAKCGSISESYTLFKRMNVTNIALWNAM 2079
            LTA EQGKQIHAN++KL C  DPFV TSL+DMYAKCG+I ++Y LF+RMN  ++ALWNAM
Sbjct: 614  LTALEQGKQIHANIMKLNCAFDPFVMTSLVDMYAKCGNIEDAYGLFRRMNTRSVALWNAM 673

Query: 2080 MVGLAQHGNGEEALNLFREMRIQGVVPDKISFIGILSACSYSGLVSEAYGHFDSMYKDYG 2259
            +VGLAQHGN EEALN F EM+ +GV PD+++FIG+LSACS+SGL S+AY +FDSM K YG
Sbjct: 674  IVGLAQHGNAEEALNFFNEMKSRGVTPDRVTFIGVLSACSHSGLTSDAYKNFDSMQKTYG 733

Query: 2260 IEPEIEHYSCLVDVLGRAGLLEDAEKLISNMPFAPSASMYRALLGACWVQKNAEVGKRIA 2439
            +EPEIEHYSCLVD L RAG +++AEK++S+MPF  SA+MYR LL AC VQ + E G+R+A
Sbjct: 734  VEPEIEHYSCLVDALSRAGHIQEAEKVVSSMPFEASATMYRTLLNACRVQGDKETGERVA 793

Query: 2440 SQLLALDPLDSSAYVLMSNIYAAANQWNQVADARKMMKTRNVKKDPGYSWIDVKNKVHLF 2619
             +L  +DP DS+AYVL+SNIYAAANQW     AR MMK  NVKK+PG+SWID+KNKVHLF
Sbjct: 794  EKLFTMDPSDSAAYVLLSNIYAAANQWENAVSARNMMKRVNVKKEPGFSWIDMKNKVHLF 853

Query: 2620 VVDDNSHPQAAAVISKVEELIETIKKEGYVPDTDFLLHDVENEDKERALYYHSEKLAIAY 2799
            V  D SH +   + +KVE +++ IK+EGYVPDT+F L D+E EDKE AL YHSEKLAIAY
Sbjct: 854  VAGDRSHEETDLIYNKVEYVMKRIKEEGYVPDTEFALVDIEEEDKESALSYHSEKLAIAY 913

Query: 2800 GLISTPPSTTIRVIKNLRVCGDCHNAIKYISRTVEREIVVRDANRFHCFKKGTCSCGDYW 2979
            GL+ TPPSTT+RVIKNLRVCGDCHNAIKYIS   +REIV+RDANRFH F+ G CSCGDYW
Sbjct: 914  GLMKTPPSTTLRVIKNLRVCGDCHNAIKYISNVFQREIVLRDANRFHHFRSGICSCGDYW 973


>ref|XP_003527761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1582

 Score = 1128 bits (2918), Expect = 0.0
 Identities = 574/962 (59%), Positives = 716/962 (74%), Gaps = 5/962 (0%)
 Frame = +1

Query: 109  ILQNSITQRNLPLGKCTHARIIRFGDYSNRFLTNNLINMYSKCGVLDYARKLFDQSPN-- 282
            IL+++I   +LPLGK  HARI+  G + +RFLTNNLI MYSKCG L  ARKLFD +P+  
Sbjct: 632  ILRHAIAASDLPLGKRAHARILTSGHHPDRFLTNNLITMYSKCGSLSSARKLFDTTPDTS 691

Query: 283  RDLVTWNSILAGYAVSAETDDSKIFDGFCLFRGLRRCEELSPTRLTLAPVLKMALFSGCI 462
            RDLVTWN+IL+ +A  A        DGF LFR LRR   +S TR TLAPV KM L S   
Sbjct: 692  RDLVTWNAILSAHADKAR-------DGFHLFRLLRR-SFVSATRHTLAPVFKMCLLSASP 743

Query: 463  SISEAIHCYAAKVGLDFDVFISGILVNIYTKVGWVEEARRLFDEMPEKDVVMWNVMLKAY 642
            S +E++H YA K+GL +DVF++G LVNIY K G + EAR LFD M  +DVV+WNVM+KAY
Sbjct: 744  SAAESLHGYAVKIGLQWDVFVAGALVNIYAKFGRIREARVLFDGMGLRDVVLWNVMMKAY 803

Query: 643  VQSGAFDTEVFRLFSEFHSSGLRPDDISVNCVLRELSKGVASEELSKSIDQVRAYAVKLS 822
            V +G  + E   LFSEF+ +GLRPDD+++ C L  + K      L   + Q++AY  KL 
Sbjct: 804  VDTG-LEYEALLLFSEFNRTGLRPDDVTL-CTLARVVKS-KQNVLEWQLKQLKAYGTKLF 860

Query: 823  LLNDV---RDVFKWNKTMSEYINAGENRAALECFLEMTRSNVECDKVTFVIVLSSAMGTN 993
            + +D     DV  WNKT+S ++  GE   A++CF++M  S V CD +TFV++LS   G N
Sbjct: 861  MYDDDDDGSDVIAWNKTLSWFLQRGETWEAVDCFVDMINSRVACDGLTFVVMLSVVAGLN 920

Query: 994  DLKVGQQIQCRVVKSGFDFDISIANSLINMYAKMGCLNYARAIFSEMEELDLISWNSMIS 1173
             L++G+QI   VV+SG D  +S+ N LINMY K G ++ AR +F +M E+DL+SWN+MIS
Sbjct: 921  CLELGKQIHGIVVRSGLDQVVSVGNCLINMYVKTGSVSRARTVFWQMNEVDLVSWNTMIS 980

Query: 1174 SCVQGGLGKESLNLFLDLLCEGLRPDQFTLASVLRACSSVPHGFYLGRQVHVHAVKLGCI 1353
             C   GL + S+ +F+DLL  GL PDQFT+ASVLRACSS+  G +L  Q+H  A+K G +
Sbjct: 981  GCALSGLEECSVGMFVDLLRGGLLPDQFTVASVLRACSSLGGGCHLATQIHACAMKAGVV 1040

Query: 1354 GDVFVSTALIDVYGKSGRMEEAELVYKIREGFDLGSCNAMMAGYINNQDSSKALSLFSLI 1533
             D FVST LIDVY KSG+MEEAE ++  ++GFDL S NAMM GYI + D  KAL L+ L+
Sbjct: 1041 LDSFVSTTLIDVYSKSGKMEEAEFLFVNQDGFDLASWNAMMHGYIVSGDFPKALRLYILM 1100

Query: 1534 HKDGKKSNQFTLATAINACGSSVVLEQGKQIQAHVIKLGFDSDLCVSSGILDMYVKCGDM 1713
             + G+++NQ TLA A  A G  V L+QGKQIQA V+K GF+ DL V SG+LDMY+KCG+M
Sbjct: 1101 QESGERANQITLANAAKAAGGLVGLKQGKQIQAVVVKRGFNLDLFVISGVLDMYLKCGEM 1160

Query: 1714 KGASLLFDGICEPDDVVWTAMISGCVENGDEDHALWLYHQMRHSGILPDEYTFATLIKAC 1893
            + A  +F+ I  PDDV WT MISGCVENG E+HAL+ YH MR S + PDEYTFATL+KAC
Sbjct: 1161 ESARRIFNEIPSPDDVAWTTMISGCVENGQEEHALFTYHHMRLSKVQPDEYTFATLVKAC 1220

Query: 1894 SCLTAFEQGKQIHANVIKLECLSDPFVGTSLIDMYAKCGSISESYTLFKRMNVTNIALWN 2073
            S LTA EQG+QIHAN +KL C  DPFV TSL+DMYAKCG+I ++  LFKR N + IA WN
Sbjct: 1221 SLLTALEQGRQIHANTVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTSRIASWN 1280

Query: 2074 AMMVGLAQHGNGEEALNLFREMRIQGVVPDKISFIGILSACSYSGLVSEAYGHFDSMYKD 2253
            AM+VGLAQHGN EEAL  F EM+ +GV PD+++FIG+LSACS+SGLVSEAY +F SM K 
Sbjct: 1281 AMIVGLAQHGNAEEALQFFEEMKSRGVTPDRVTFIGVLSACSHSGLVSEAYENFYSMQKI 1340

Query: 2254 YGIEPEIEHYSCLVDVLGRAGLLEDAEKLISNMPFAPSASMYRALLGACWVQKNAEVGKR 2433
            YGIEPEIEHYSCLVD L RAG + +AEK+IS+MPF  SASMYR LL AC VQ + E GKR
Sbjct: 1341 YGIEPEIEHYSCLVDALSRAGRIREAEKVISSMPFEASASMYRTLLNACRVQVDRETGKR 1400

Query: 2434 IASQLLALDPLDSSAYVLMSNIYAAANQWNQVADARKMMKTRNVKKDPGYSWIDVKNKVH 2613
            +A +LLAL+P DS+AYVL+SN+YAAANQW  VA AR MM+  NVKKDPG+SW+D+KNKVH
Sbjct: 1401 VAEKLLALEPSDSAAYVLLSNVYAAANQWENVASARNMMRKANVKKDPGFSWVDLKNKVH 1460

Query: 2614 LFVVDDNSHPQAAAVISKVEELIETIKKEGYVPDTDFLLHDVENEDKERALYYHSEKLAI 2793
            LFV  D SH +   + +KVE +++ I++EGY+PDTDF L DVE EDKE +LYYHSEKLAI
Sbjct: 1461 LFVAGDRSHEETDVIYNKVEYIMKRIREEGYLPDTDFALVDVEEEDKECSLYYHSEKLAI 1520

Query: 2794 AYGLISTPPSTTIRVIKNLRVCGDCHNAIKYISRTVEREIVVRDANRFHCFKKGTCSCGD 2973
            AYGL+ TPPSTT+RVIKNLRVCGDCHNAIKYIS+  ERE+V+RDANRFH F+ G CSCGD
Sbjct: 1521 AYGLMKTPPSTTLRVIKNLRVCGDCHNAIKYISKVFEREVVLRDANRFHHFRSGVCSCGD 1580

Query: 2974 YW 2979
            YW
Sbjct: 1581 YW 1582