BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00005739
         (243 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABD32264.2| RNA-directed DNA polymerase , putative [Medicago ...    92   4e-17
gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptas...    91   7e-17
gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptas...    90   2e-16
ref|XP_002522932.1| conserved hypothetical protein [Ricinus comm...    88   6e-16
sp|P0C2F6.1|RNHX1_ARATH RecName: Full=Putative ribonuclease H pr...    80   2e-13

>gb|ABD32264.2| RNA-directed DNA polymerase , putative [Medicago truncatula]
          Length = 161

 Score = 92.0 bits (227), Expect = 4e-17
 Identities = 35/80 (43%), Positives = 62/80 (77%)
 Frame = -1

Query: 240 LLSFQGRSIMIKAVLSSIPIHNMALYKWPASIIKEAERAMRNFLWSGDSSKKMAITVKWE 61
           LLS  GR  M+K+V+ S+  H++ +Y WP S++K+ E++++NF+WSGD+SK+  +TV W+
Sbjct: 70  LLSIAGRVQMVKSVIQSMLTHSITVYNWPTSLLKDLEKSIKNFIWSGDTSKRKLVTVAWK 129

Query: 60  QVCKPVEEGGLGIKKLKEIN 1
           ++C+P ++GGL I+ L ++N
Sbjct: 130 KLCRPFDQGGLRIRSLIQLN 149


>gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 528

 Score = 91.3 bits (225), Expect = 7e-17
 Identities = 37/80 (46%), Positives = 57/80 (71%)
 Frame = -1

Query: 240 LLSFQGRSIMIKAVLSSIPIHNMALYKWPASIIKEAERAMRNFLWSGDSSKKMAITVKWE 61
           +LS  GR  +IK+V  S+ IH + +Y WP+ ++KE E   RNF+WSGD +K+  +TV W+
Sbjct: 435 ILSIAGRVQLIKSVAQSMLIHTITIYDWPSFLLKELETCFRNFIWSGDITKRKLVTVAWK 494

Query: 60  QVCKPVEEGGLGIKKLKEIN 1
           ++CKP  +GGLGI+ L ++N
Sbjct: 495 KLCKPQSQGGLGIRSLSQLN 514


>gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 642

 Score = 90.1 bits (222), Expect = 2e-16
 Identities = 37/80 (46%), Positives = 57/80 (71%)
 Frame = -1

Query: 240 LLSFQGRSIMIKAVLSSIPIHNMALYKWPASIIKEAERAMRNFLWSGDSSKKMAITVKWE 61
           LLS  GR  ++K+V+ S+ +H M++Y WP  I+KE E+ ++NF+WSGD +K+  +TV W 
Sbjct: 529 LLSIAGRIQLVKSVVQSMLVHTMSIYSWPIKILKEMEKWIKNFIWSGDVTKRKMVTVAWR 588

Query: 60  QVCKPVEEGGLGIKKLKEIN 1
           ++C   EEGGLG+K L  +N
Sbjct: 589 KICADYEEGGLGVKSLICLN 608


>ref|XP_002522932.1| conserved hypothetical protein [Ricinus communis]
           gi|223537826|gb|EEF39443.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 303

 Score = 88.2 bits (217), Expect = 6e-16
 Identities = 36/81 (44%), Positives = 55/81 (67%)
 Frame = -1

Query: 243 RLLSFQGRSIMIKAVLSSIPIHNMALYKWPASIIKEAERAMRNFLWSGDSSKKMAITVKW 64
           R L   GR  +I +V+ +  +H   +Y+WP+S++K  E+A+RNFLW+G  S K  +TVKW
Sbjct: 169 RTLFMAGRLALINSVIFASLLHTFMMYRWPSSLLKSIEKAIRNFLWTGSVSYKKLVTVKW 228

Query: 63  EQVCKPVEEGGLGIKKLKEIN 1
              CKP+ EGG+G+K+L  +N
Sbjct: 229 GHCCKPISEGGIGLKRLDVLN 249


>sp|P0C2F6.1|RNHX1_ARATH RecName: Full=Putative ribonuclease H protein At1g65750
          Length = 620

 Score = 80.1 bits (196), Expect = 2e-13
 Identities = 36/81 (44%), Positives = 51/81 (62%)
 Frame = -1

Query: 243 RLLSFQGRSIMIKAVLSSIPIHNMALYKWPASIIKEAERAMRNFLWSGDSSKKMAITVKW 64
           + LSF GR  + KAVLSS+P+H+M+    P SI+   ++  R FLW   + KK    VKW
Sbjct: 30  KTLSFAGRLTLTKAVLSSMPVHSMSTILLPQSILNRLDQLSRTFLWGSTAEKKKQHLVKW 89

Query: 63  EQVCKPVEEGGLGIKKLKEIN 1
            +VC P +EGGLG++  K +N
Sbjct: 90  SKVCSPKKEGGLGVRAAKSMN 110