BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00005726
         (1024 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002891531.1| PAB8 binding protein 8 [Arabidopsis lyrata s...    79   1e-14
ref|XP_003607922.1| Poly(A)-binding protein [Medicago truncatula...    76   1e-14
ref|XP_003518706.1| PREDICTED: polyadenylate-binding protein 2-l...    75   2e-14
emb|CBI32381.3| unnamed protein product [Vitis vinifera]               74   9e-14
ref|NP_564554.1| poly(A) binding protein 8 [Arabidopsis thaliana...    76   9e-14

>ref|XP_002891531.1| PAB8 binding protein 8 [Arabidopsis lyrata subsp. lyrata]
           gi|297337373|gb|EFH67790.1| PAB8 binding protein 8
           [Arabidopsis lyrata subsp. lyrata]
          Length = 669

 Score = 79.0 bits (193), Expect(2) = 1e-14
 Identities = 68/230 (29%), Positives = 107/230 (46%), Gaps = 14/230 (6%)
 Frame = +2

Query: 86  SLYIDRFDPCVTETQLFNLFSQHGQVISIEM-------RSC-YAYVNYDSLQDXXXXXXX 241
           SLY+   D  VT++QLF  FSQ GQV+S+ +       RS  Y YVNY + QD       
Sbjct: 40  SLYVGDLDATVTDSQLFEAFSQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNE 99

Query: 242 XXXXXXXXXXXXXXLIFHSINGNLSGLLCSQIKGKRLKFVSWE*IHQLEAKF-----CGV 406
                               +   SG+    IK    K +  + +H+  + F     C V
Sbjct: 100 LNFMALNGRAIRVMYSVRDPSLRKSGVGNIFIKNLD-KSIDHKALHETFSAFGPILSCKV 158

Query: 407 FLKNTVLSF-HASVEYSDEVATLKAIRALNGMLLNNTQVHITPFIYKRTREEEARRLQRL 583
            +  +  S  +  V+Y  + A  +AI  LNGMLLN+ QV++ PF++K  R+    ++ + 
Sbjct: 159 AVDPSGQSKGYGFVQYDTDEAAQRAIDKLNGMLLNDKQVYVGPFVHKLQRDPSGEKV-KF 217

Query: 584 PTLYVRHEPVSLSPSYVSKVIREYGTVANVRFVMDDDHGLRTGAVYVTYE 733
             +YV++   SLS   ++KV  E+G   +   +M D  G   G  +V +E
Sbjct: 218 TNVYVKNLSESLSDEELNKVFGEFGVTTSC-VIMRDGEGKSKGFGFVNFE 266



 Score = 27.3 bits (59), Expect(2) = 1e-14
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +3

Query: 717 FMLLMRHDDDAAKLEKLNGCRGEHESWYV-QFKSESEKKDELDYKSE 854
           F+     DD A  ++ LNG   + + W+V + + +SE++ EL  K E
Sbjct: 262 FVNFENSDDAARAVDALNGKTFDDKEWFVGKAQKKSERETELKQKFE 308


>ref|XP_003607922.1| Poly(A)-binding protein [Medicago truncatula]
           gi|355508977|gb|AES90119.1| Poly(A)-binding protein
           [Medicago truncatula]
          Length = 654

 Score = 75.9 bits (185), Expect(2) = 1e-14
 Identities = 69/237 (29%), Positives = 108/237 (45%), Gaps = 14/237 (5%)
 Frame = +2

Query: 68  GSVVMASLYIDRFDPCVTETQLFNLFSQHGQVISIEM-------RSC-YAYVNYDSLQDX 223
           G+ V  SLY+   D  VT++QL++LF+Q GQV+S+ +       RS  Y YVNY + QD 
Sbjct: 29  GNFVTTSLYVGDLDMNVTDSQLYDLFNQLGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDA 88

Query: 224 XXXXXXXXXXXXXXXXXXXXLIFHSINGNLSGLLCSQIKGKRLKFVSWE*IHQLEAKF-- 397
                                     +   SG     IK    K +  + +H   + F  
Sbjct: 89  ARALDVLNFTPLNNRPIRIMYSHRDPSIRKSGQGNIFIKNLD-KAIDHKALHDTFSSFGN 147

Query: 398 ---CGVFLKNTVLSF-HASVEYSDEVATLKAIRALNGMLLNNTQVHITPFIYKRTREEEA 565
              C V +  +  S  +  V++  E A  KAI  LNGMLLN+ QV++ PF+ K+ RE   
Sbjct: 148 ILSCKVAVDGSGQSKGYGFVQFDTEEAAQKAIEKLNGMLLNDKQVYVGPFLRKQERESTG 207

Query: 566 RRLQRLPTLYVRHEPVSLSPSYVSKVIREYGTVANVRFVMDDDHGLRTGAVYVTYET 736
            R  +   ++V++   S +   + K   E+GT+ +   VM D  G      +V +E+
Sbjct: 208 DR-AKFNNVFVKNLSESTTDDELKKTFGEFGTITSA-VVMRDGDGKSKCFGFVNFES 262



 Score = 30.4 bits (67), Expect(2) = 1e-14
 Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = +3

Query: 738 DDDAAKLEKLNGCRGEHESWYV-QFKSESEKKDELDYKSE 854
           DD A  +E LNG + + + WYV + + +SE++ EL  K E
Sbjct: 264 DDAARAVEALNGKKIDDKEWYVGKAQKKSEREHELKIKFE 303


>ref|XP_003518706.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
          Length = 646

 Score = 75.5 bits (184), Expect(2) = 2e-14
 Identities = 65/230 (28%), Positives = 105/230 (45%), Gaps = 14/230 (6%)
 Frame = +2

Query: 47  NDDDAAPGSVVMASLYIDRFDPCVTETQLFNLFSQHGQVISIEM-------RSC-YAYVN 202
           N   AA    V  SLY+   DP VT+ QL++LF+Q GQV+S+ +       RS  Y YVN
Sbjct: 16  NGGGAAGNQFVTTSLYVGDLDPNVTDAQLYDLFNQLGQVVSVRVCRDLTSRRSLGYGYVN 75

Query: 203 YDSLQDXXXXXXXXXXXXXXXXXXXXXLIFHSINGNLSGLLCSQIKGKRLKFVSWE*IHQ 382
           + + QD                           +   SG     IK    + +  + +H 
Sbjct: 76  FSNPQDAARALDVLNFTPLNNRPIRIMYSHRDPSIRKSGQGNIFIKNLD-RAIDHKALHD 134

Query: 383 LEAKF-----CGVFLKNTVLSF-HASVEYSDEVATLKAIRALNGMLLNNTQVHITPFIYK 544
             + F     C V   ++  S  +  V++ +E +  KAI  LNGMLLN+ QV++ PF+ K
Sbjct: 135 TFSTFGNILSCKVATDSSGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGPFLRK 194

Query: 545 RTREEEARRLQRLPTLYVRHEPVSLSPSYVSKVIREYGTVANVRFVMDDD 694
           + RE  A +  +   ++V++   S +   +  V  E+GT+ +   + D D
Sbjct: 195 QERESTADK-AKFNNVFVKNLSESTTDDELKNVFGEFGTITSAVVMRDGD 243



 Score = 30.4 bits (67), Expect(2) = 2e-14
 Identities = 15/40 (37%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
 Frame = +3

Query: 738 DDDAAKLEKLNGCRGEHESWYV-QFKSESEKKDELDYKSE 854
           DD A  +E LNG + + + WYV + + +SE+++EL  + E
Sbjct: 258 DDAARAVEALNGKKFDDKEWYVGKAQKKSERENELKQRFE 297


>emb|CBI32381.3| unnamed protein product [Vitis vinifera]
          Length = 766

 Score = 73.9 bits (180), Expect(2) = 9e-14
 Identities = 64/230 (27%), Positives = 104/230 (45%), Gaps = 14/230 (6%)
 Frame = +2

Query: 47  NDDDAAPGSVVMASLYIDRFDPCVTETQLFNLFSQHGQVISIEM-------RSC-YAYVN 202
           ++ +  P     ASLY+   D  VT++QL +LFSQ  QV+SI +       RS  Y YVN
Sbjct: 157 DEPNIGPSRFASASLYVGDLDLNVTDSQLHDLFSQLAQVVSIRVCRDSTTHRSLGYGYVN 216

Query: 203 YDSLQDXXXXXXXXXXXXXXXXXXXXXLIFHSINGNLSGLLCSQIKGKRLKFVSWE*IHQ 382
           Y  L+D                           +   SG     IK    K +  + +H 
Sbjct: 217 YTDLEDAARALDVLNFTPLNGKPIRIMYSHRDPSIRKSGTGNIFIKNLD-KGIDHKALHD 275

Query: 383 LEAKF-----CGVFLKNTVLSF-HASVEYSDEVATLKAIRALNGMLLNNTQVHITPFIYK 544
             + F     C V    + +S  H  V++  E A  KAI  LNGMLLN+ QV + PF+ K
Sbjct: 276 TFSAFGNILSCKVATDASGMSKGHGFVQFDSEEAAQKAIDKLNGMLLNDKQVFVGPFVRK 335

Query: 545 RTREEEARRLQRLPTLYVRHEPVSLSPSYVSKVIREYGTVANVRFVMDDD 694
           + RE    + ++   ++V++    ++   ++++  E+G + +V  + D D
Sbjct: 336 QERESTINK-EKFNNVFVKNISEGMTEEDLTRIFGEFGPITSVVVMRDGD 384



 Score = 29.6 bits (65), Expect(2) = 9e-14
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = +3

Query: 738 DDDAAKLEKLNGCRGEHESWYVQFKSESEKKDELDYKS 851
           DD A  +E LNG + + + WYV  K++ + + E++ KS
Sbjct: 399 DDAAMSVEALNGQKFDDKEWYVG-KAQKKSEREIELKS 435


>ref|NP_564554.1| poly(A) binding protein 8 [Arabidopsis thaliana]
           gi|334183191|ref|NP_001185184.1| poly(A) binding protein
           8 [Arabidopsis thaliana]
           gi|10120431|gb|AAG13056.1|AC011807_15 Putative Poly-A
           Binding Protein [Arabidopsis thaliana]
           gi|13877633|gb|AAK43894.1|AF370517_1 Putative Poly-A
           Binding Protein [Arabidopsis thaliana]
           gi|17978685|gb|AAL47336.1| putative Poly-A Binding
           Protein [Arabidopsis thaliana]
           gi|332194351|gb|AEE32472.1| poly(A) binding protein 8
           [Arabidopsis thaliana] gi|332194352|gb|AEE32473.1|
           poly(A) binding protein 8 [Arabidopsis thaliana]
          Length = 671

 Score = 76.3 bits (186), Expect(2) = 9e-14
 Identities = 67/230 (29%), Positives = 106/230 (46%), Gaps = 14/230 (6%)
 Frame = +2

Query: 86  SLYIDRFDPCVTETQLFNLFSQHGQVISIEM-------RSC-YAYVNYDSLQDXXXXXXX 241
           SLY+   D  VT++QLF  F+Q GQV+S+ +       RS  Y YVNY + QD       
Sbjct: 46  SLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNE 105

Query: 242 XXXXXXXXXXXXXXLIFHSINGNLSGLLCSQIKGKRLKFVSWE*IHQLEAKF-----CGV 406
                               +   SG+    IK    K +  + +H+  + F     C V
Sbjct: 106 LNFMALNGRAIRVMYSVRDPSLRKSGVGNIFIKNLD-KSIDHKALHETFSAFGPILSCKV 164

Query: 407 FLKNTVLSF-HASVEYSDEVATLKAIRALNGMLLNNTQVHITPFIYKRTREEEARRLQRL 583
            +  +  S  +  V+Y  + A   AI  LNGMLLN+ QV++ PF++K  R+    ++ + 
Sbjct: 165 AVDPSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVGPFVHKLQRDPSGEKV-KF 223

Query: 584 PTLYVRHEPVSLSPSYVSKVIREYGTVANVRFVMDDDHGLRTGAVYVTYE 733
             +YV++   SLS   ++KV  E+G   +   +M D  G   G  +V +E
Sbjct: 224 TNVYVKNLSESLSDEELNKVFGEFGVTTSC-VIMRDGEGKSKGFGFVNFE 272



 Score = 27.3 bits (59), Expect(2) = 9e-14
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +3

Query: 717 FMLLMRHDDDAAKLEKLNGCRGEHESWYV-QFKSESEKKDELDYKSE 854
           F+     DD A  ++ LNG   + + W+V + + +SE++ EL  K E
Sbjct: 268 FVNFENSDDAARAVDALNGKTFDDKEWFVGKAQKKSERETELKQKFE 314