BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00005659
         (352 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002268415.1| PREDICTED: pentatricopeptide repeat-containi...    65   4e-09
ref|XP_002889556.1| pentatricopeptide repeat-containing protein ...    64   1e-08
ref|NP_172051.1| pentatricopeptide repeat-containing protein [Ar...    61   8e-08
ref|XP_004140638.1| PREDICTED: pentatricopeptide repeat-containi...    57   2e-06
gb|AFW84212.1| hypothetical protein ZEAMMB73_027046 [Zea mays]         56   3e-06

>ref|XP_002268415.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g05600-like [Vitis vinifera]
          Length = 503

 Score = 65.5 bits (158), Expect = 4e-09
 Identities = 34/69 (49%), Positives = 46/69 (66%), Gaps = 9/69 (13%)
 Frame = -2

Query: 180 FISSVSMYEAKLDA---------AVQVIGEEMLDDNCAPTATTYKIMVKGLCDEGKSMTG 28
           F  S+S+YEAK+ A         AV+VI EEM++D+C PT   Y I++KGLC EGKS   
Sbjct: 327 FKPSLSIYEAKIAALCRCGGVEEAVKVIKEEMVEDSCVPTVRLYNIVLKGLCREGKSAFA 386

Query: 27  IRYLDKMAK 1
           + YL+KMA+
Sbjct: 387 VGYLEKMAR 395


>ref|XP_002889556.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297335398|gb|EFH65815.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 503

 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 27/50 (54%), Positives = 37/50 (74%)
 Frame = -2

Query: 150 KLDAAVQVIGEEMLDDNCAPTATTYKIMVKGLCDEGKSMTGIRYLDKMAK 1
           KL+ AV VI +EM++ +C PT   Y +++KGLCDEGKSM  + YL KM+K
Sbjct: 347 KLEEAVSVINKEMMEGHCLPTVGVYNVLIKGLCDEGKSMEAVGYLKKMSK 396


>ref|NP_172051.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|334182311|ref|NP_001184914.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
           gi|75213450|sp|Q9SYK1.1|PPR11_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At1g05600 gi|4836924|gb|AAD30626.1|AC007153_18
           Hypothetical protein [Arabidopsis thaliana]
           gi|53828567|gb|AAU94393.1| At1g05600 [Arabidopsis
           thaliana] gi|56790224|gb|AAW30029.1| At1g05600
           [Arabidopsis thaliana] gi|332189741|gb|AEE27862.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana] gi|332189742|gb|AEE27863.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 504

 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 26/50 (52%), Positives = 35/50 (70%)
 Frame = -2

Query: 150 KLDAAVQVIGEEMLDDNCAPTATTYKIMVKGLCDEGKSMTGIRYLDKMAK 1
           KL  AV VI +EM+  +C PT   Y +++KGLCD+GKSM  + YL KM+K
Sbjct: 348 KLKEAVSVINKEMMQGHCLPTVGVYNVLIKGLCDDGKSMEAVGYLKKMSK 397


>ref|XP_004140638.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g05600-like [Cucumis sativus]
           gi|449526108|ref|XP_004170056.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At1g05600-like [Cucumis sativus]
          Length = 497

 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 28/52 (53%), Positives = 35/52 (67%)
 Frame = -2

Query: 156 EAKLDAAVQVIGEEMLDDNCAPTATTYKIMVKGLCDEGKSMTGIRYLDKMAK 1
           E K+D AV+VI EE +   C PT   Y I++KGLCD+GKS   + YL KMAK
Sbjct: 345 EGKVDDAVKVI-EEQIVGGCVPTIALYNIVLKGLCDDGKSTVAMEYLKKMAK 395


>gb|AFW84212.1| hypothetical protein ZEAMMB73_027046 [Zea mays]
          Length = 494

 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 9/69 (13%)
 Frame = -2

Query: 180 FISSVSMYEAKL---------DAAVQVIGEEMLDDNCAPTATTYKIMVKGLCDEGKSMTG 28
           F  ++ MYEAK+         D AV+V+ EE+  ++  PT TTY +++KGLCD  +SM  
Sbjct: 322 FRPTICMYEAKIGALCRERNVDDAVEVLEEELPKNDLVPTVTTYNLLMKGLCDTMQSMRA 381

Query: 27  IRYLDKMAK 1
           + YL KM K
Sbjct: 382 LEYLKKMDK 390