BLASTX nr result
ID: Coptis23_contig00005644
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00005644
(2057 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002275898.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 551 e-154
emb|CBI34757.3| unnamed protein product [Vitis vinifera] 530 e-148
ref|XP_004147993.1| PREDICTED: DNA-directed RNA polymerase D sub... 518 e-144
ref|XP_002298071.1| RNA polymerase IV subunit [Populus trichocar... 518 e-144
gb|AAY89360.1| RNA polymerase IV largest subunit [Solanum lycope... 494 e-137
>ref|XP_002275898.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase D subunit
1-like [Vitis vinifera]
Length = 1560
Score = 551 bits (1420), Expect = e-154
Identities = 290/592 (48%), Positives = 385/592 (65%), Gaps = 17/592 (2%)
Frame = +1
Query: 1 DGTVRYSYGNQVVQFSYGV---SEDSSVLTSGNSAHQLG-DPVGSLAACSISEAAYSALE 168
DGTVR +YGNQ+VQFSY + S S + A+ +G PVGS++AC+ISEAAYSAL+
Sbjct: 879 DGTVRNAYGNQLVQFSYNIEHTSTPSDGINEDTCAYDMGGQPVGSISACAISEAAYSALD 938
Query: 169 KPISTFESSPLLNLKMLLDSSYKKTTVGQTVSLFLSKKLERWLYGPEYGSLTVRSHLERV 348
+PIS E SPLLNLK +L+ +K+T +TVSLFLSKKLE+ +G EYG+L V++HLE++
Sbjct: 939 QPISLLEPSPLLNLKRVLECGLRKSTADRTVSLFLSKKLEKRKHGFEYGALEVKNHLEKL 998
Query: 349 LFSDIVSSVMIIFSQQRSCQPHTSPWVCHFHLHQGKMKKIGLDVQSIINALRQECDSTRQ 528
LFSDIVS+VMI+FS Q + H SPWVCHFH+ + KK L SII+AL +C+S R
Sbjct: 999 LFSDIVSTVMIVFSPQNGSKTHFSPWVCHFHVCEEIAKKRSLKPHSIIDALYMKCNSARA 1058
Query: 529 TLKVELPKLHILTRICSATNAQNEKDEDICITVEAEVSRSSLLVMDTFRHTVIPFLLGTV 708
K+ LP L I ++ C + + E + CITV S+ S + +DT R VIPFLLG V
Sbjct: 1059 ESKINLPDLQITSKDCFV-DMEKEDSDCFCITVSIVNSKKSCIQLDTVRDLVIPFLLGAV 1117
Query: 709 IKGFMEFKKVDILWSESNISD--KASRGELYMKVHLYEHCKSGTGWSLVVNKCLQIMDLI 882
+KG ++ KKVDILW+++ SD K+S G LY++V++ C W ++++ CLQIMD+I
Sbjct: 1118 VKGLLDVKKVDILWNDNPDSDVLKSSSGRLYLRVYVSGDCGKKNFWGVLMDACLQIMDMI 1177
Query: 883 DWNRSHPDSMHDLFCTYGIDCSWEYFLKNLKVAVSDIGKSILPEHLLLVADCLTVTGQFI 1062
DW RSHPD++HD+F YGID W+YFL +LK A+SDIGK++LPEHLLLVA CL+ TG+F+
Sbjct: 1178 DWERSHPDNIHDIFVVYGIDAGWKYFLNSLKSAISDIGKTVLPEHLLLVASCLSATGEFV 1237
Query: 1063 GLNAKGIAKQRDLVSVPSPFTQACFSSPGPSFIKAAKYGAEDGLLGVLNAAAWGKEIPLG 1242
GLNAKG+A+Q++L S+ SPF Q CFSSPG FIKA K D L G L+A AWGK +G
Sbjct: 1238 GLNAKGMARQKELTSISSPFMQGCFSSPGSCFIKAGKRAVADNLHGSLDALAWGKIPSVG 1297
Query: 1243 TGGQFDIIYSGKVHEFSETLDIYNTLSGHLCPERQNVKISVPPTTQKRMSGKGDTDVLQT 1422
+GG FDI+YS K HE + DIY L QN+K+ VP T + + G V
Sbjct: 1298 SGGHFDILYSAKGHELARPEDIYKLLGSQTSCHEQNLKVKVPITCYQTTTKCGAQLVYAN 1357
Query: 1423 FDSFIGKGPNNLK-----------GLSDLVMLHKNLQEILHRYPVNDFLNEKDKSILTSA 1569
DS KG +L+ L+D+ L + L+ IL +YP+N L+E DK+ L A
Sbjct: 1358 GDS-ASKGCKSLEKISKSVLRSFLSLNDIQKLSRRLKFILQKYPINHQLSEIDKTTLMMA 1416
Query: 1570 LSYHPRSXXXXXXXXXXXXXXXHQKYKYSHCFILVRKDGSEDDFSYRKCVRG 1725
L +HPR H KY + CF LVR DG+E+DFSY KCV G
Sbjct: 1417 LYFHPRRDEKIGPGAQNIKVRYHSKYHNTRCFSLVRTDGTEEDFSYHKCVHG 1468
>emb|CBI34757.3| unnamed protein product [Vitis vinifera]
Length = 1359
Score = 530 bits (1364), Expect = e-148
Identities = 284/590 (48%), Positives = 375/590 (63%), Gaps = 15/590 (2%)
Frame = +1
Query: 1 DGTVRYSYGNQVVQFSYGV---SEDSSVLTSGNSAHQLG-DPVGSLAACSISEAAYSALE 168
DGTVR +YGNQ+VQFSY + S S + A+ +G PVGS++AC+ISEAAYSAL+
Sbjct: 748 DGTVRNAYGNQLVQFSYNIEHTSTPSDGINEDTCAYDMGGQPVGSISACAISEAAYSALD 807
Query: 169 KPISTFESSPLLNLKMLLDSSYKKTTVGQTVSLFLSKKLERWLYGPEYGSLTVRSHLERV 348
+PIS E SPLLNLK +L+ +K+T +TVSLFLSKKLE+ +G EYG+L V++HLE++
Sbjct: 808 QPISLLEPSPLLNLKRVLECGLRKSTADRTVSLFLSKKLEKRKHGFEYGALEVKNHLEKL 867
Query: 349 LFSDIVSSVMIIFSQQRSCQPHTSPWVCHFHLHQGKMKKIGLDVQSIINALRQECDSTRQ 528
LFSDIVS+VMI+FS Q + H SPWVCHFH+ + KK L SII+AL +C+S R
Sbjct: 868 LFSDIVSTVMIVFSPQNGSKTHFSPWVCHFHVCEEIAKKRSLKPHSIIDALYMKCNSARA 927
Query: 529 TLKVELPKLHILTRICSATNAQNEKDEDICITVEAEVSRSSLLVMDTFRHTVIPFLLGTV 708
K+ LP L I ++ C + + E + CITV S+ S + +DT R VIPFLLG V
Sbjct: 928 ESKINLPDLQITSKDCFV-DMEKEDSDCFCITVSIVNSKKSCIQLDTVRDLVIPFLLGAV 986
Query: 709 IKGFMEFKKVDILWSESNISDKASRGELYMKVHLYEHCKSGTGWSLVVNKCLQIMDLIDW 888
+KG K D+L K+S G LY++V++ C W ++++ CLQIMD+IDW
Sbjct: 987 VKGCC-IKNSDVL--------KSSSGRLYLRVYVSGDCGKKNFWGVLMDACLQIMDMIDW 1037
Query: 889 NRSHPDSMHDLFCTYGIDCSWEYFLKNLKVAVSDIGKSILPEHLLLVADCLTVTGQFIGL 1068
RSHPD++HD+F YGID W+YFL +LK A+SDIGK++LPEHLLLVA CL+ TG+F+GL
Sbjct: 1038 ERSHPDNIHDIFVVYGIDAGWKYFLNSLKSAISDIGKTVLPEHLLLVASCLSATGEFVGL 1097
Query: 1069 NAKGIAKQRDLVSVPSPFTQACFSSPGPSFIKAAKYGAEDGLLGVLNAAAWGKEIPLGTG 1248
NAKG+A+Q++L S+ SPF Q CFSSPG FIKA K D L G L+A AWGK +G+G
Sbjct: 1098 NAKGMARQKELTSISSPFMQGCFSSPGSCFIKAGKRAVADNLHGSLDALAWGKIPSVGSG 1157
Query: 1249 GQFDIIYSGKVHEFSETLDIYNTLSGHLCPERQNVKISVPPTTQKRMSGKGDTDVLQTFD 1428
G FDI+YS K HE + DIY L QN+K+ VP T + + G V D
Sbjct: 1158 GHFDILYSAKGHELARPEDIYKLLGSQTSCHEQNLKVKVPITCYQTTTKCGAQLVYANGD 1217
Query: 1429 SFIGKGPNNLK-----------GLSDLVMLHKNLQEILHRYPVNDFLNEKDKSILTSALS 1575
S KG +L+ L+D+ L + L+ IL +YP+N L+E DK+ L AL
Sbjct: 1218 S-ASKGCKSLEKISKSVLRSFLSLNDIQKLSRRLKFILQKYPINHQLSEIDKTTLMMALY 1276
Query: 1576 YHPRSXXXXXXXXXXXXXXXHQKYKYSHCFILVRKDGSEDDFSYRKCVRG 1725
+HPR H KY + CF LVR DG+E+DFSY KCV G
Sbjct: 1277 FHPRRDEKIGPGAQNIKVRYHSKYHNTRCFSLVRTDGTEEDFSYHKCVHG 1326
>ref|XP_004147993.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like [Cucumis
sativus] gi|449494342|ref|XP_004159519.1| PREDICTED: LOW
QUALITY PROTEIN: DNA-directed RNA polymerase D subunit
1-like [Cucumis sativus]
Length = 1469
Score = 518 bits (1334), Expect = e-144
Identities = 285/600 (47%), Positives = 378/600 (63%), Gaps = 19/600 (3%)
Frame = +1
Query: 1 DGTVRYSYGNQVVQFSYGVSEDSSVLTSGNSAHQLG---DPVGSLAACSISEAAYSALEK 171
DGTVR +YGNQ+VQF Y + +S S N+ G PVGSLAAC+ISEAAYSAL++
Sbjct: 858 DGTVRNAYGNQLVQFCYDIDRPTSESESENNNRDRGIGGHPVGSLAACAISEAAYSALDQ 917
Query: 172 PISTFESSPLLNLKMLLDSSYKKTTVGQTVSLFLSKKLERWLYGPEYGSLTVRSHLERVL 351
PIS E+SPLLNLK +L+ K+ + QT SLFLS+KL + YG EYG+L V++HLERV+
Sbjct: 918 PISLLEASPLLNLKRVLECGSKRNSTKQTFSLFLSEKLSKRSYGFEYGALGVKNHLERVM 977
Query: 352 FSDIVSSVMIIFSQQRSCQPHTSPWVCHFHLHQGKMKKIGLDVQSIINALRQECDSTRQT 531
F DIVSSVMIIFS S + H SPWVCHFH+ + +KK L + S+I++L CDS RQ
Sbjct: 978 FKDIVSSVMIIFSPLPSRKKHFSPWVCHFHVCKEILKKRRLKMNSVIHSLNMRCDSMRQE 1037
Query: 532 LKVELPKLHILTRICSATNAQNEKDEDICITVE-AEVSRSSLLVMDTFRHTVIPFLLGTV 708
++ LP L I+T+ C ++ E + +C+TV AE +++S L +D + +I FLLGTV
Sbjct: 1038 GRMNLPSLQIITQDCPLADSLTEDGDTVCLTVTIAENTKNSFLQLDFIQDLLIHFLLGTV 1097
Query: 709 IKGFMEFKKVDILWSESNISDK--ASRGELYMKVHLYEHCKSGTG----WSLVVNKCLQI 870
I+GF E +VDI W++ K S GELY++V + SG G W+ ++N CL I
Sbjct: 1098 IRGFTEIDRVDITWNDRPKVPKPRCSHGELYLRVTM-----SGEGNSRFWATLMNNCLPI 1152
Query: 871 MDLIDWNRSHPDSMHDLFCTYGIDCSWEYFLKNLKVAVSDIGKSILPEHLLLVADCLTVT 1050
MDLIDW RSHPD+ H L YGID W+YFL +L+ A D+GK+I EHLLLV++ L+ T
Sbjct: 1153 MDLIDWTRSHPDNTHSLCLAYGIDSGWKYFLNSLESATLDVGKTIRLEHLLLVSNSLSAT 1212
Query: 1051 GQFIGLNAKGIAKQRDLVSVPSPFTQACFSSPGPSFIKAAKYGAEDGLLGVLNAAAWGKE 1230
G+F+GLN KG+ QR+ V +PF QACFSSPG IKAAK G +D L G L+A AWG+
Sbjct: 1213 GEFVGLNVKGLTHQREHALVKTPFMQACFSSPGACMIKAAKAGIKDNLSGSLDALAWGRM 1272
Query: 1231 IPLGTGGQFDIIYSGKVHEFSETLDIYNTLSGHLCPERQNVK--------ISVPPTTQKR 1386
LGTGGQFDI+YSGK HE ++ +D+YN L G E+QN K IS + Q
Sbjct: 1273 PSLGTGGQFDILYSGKGHELNKPVDVYNLLGGQSTCEKQNTKIESLDKNTISEKYSAQLM 1332
Query: 1387 MSGKGDT-DVLQTFDSFIGKGPNNLKGLSDLVMLHKNLQEILHRYPVNDFLNEKDKSILT 1563
+ G T L+ DS L+D+ L L+ ILH+Y +N+ LNE DKS L
Sbjct: 1333 LKNGGSTIKGLKRLDSVSKSILRKFLTLNDIQKLSFALRTILHKYSLNERLNEVDKSTLM 1392
Query: 1564 SALSYHPRSXXXXXXXXXXXXXXXHQKYKYSHCFILVRKDGSEDDFSYRKCVRGFAKTLA 1743
AL +HP H KY+ + CF+L+R DG+ +DFSY KCV G + +A
Sbjct: 1393 MALYFHPHRDEKIGVGAQDIKVGSHSKYQNTRCFVLIRSDGTTEDFSYHKCVLGALEIIA 1452
>ref|XP_002298071.1| RNA polymerase IV subunit [Populus trichocarpa]
gi|222845329|gb|EEE82876.1| RNA polymerase IV subunit
[Populus trichocarpa]
Length = 1517
Score = 518 bits (1334), Expect = e-144
Identities = 285/618 (46%), Positives = 383/618 (61%), Gaps = 21/618 (3%)
Frame = +1
Query: 1 DGTVRYSYGNQVVQFSYGVSE---DSSVLTSGNSAHQLGDPVGSLAACSISEAAYSALEK 171
DGTVR +YGNQ+VQFSY + + SV NS G PVG LAAC+ISEAAYSAL++
Sbjct: 895 DGTVRNAYGNQLVQFSYNIDDMDPSGSVDEINNSDGIAGRPVGPLAACAISEAAYSALDQ 954
Query: 172 PISTFESSPLLNLKMLLDSSYKKTTVGQTVSLFLSKKLERWLYGPEYGSLTVRSHLERVL 351
PIS E SPLLNLK +L+ K+ + QT+SLFLS+KL R +G EY +L V++HLER+L
Sbjct: 955 PISLLEKSPLLNLKNVLECGLKRNSAHQTMSLFLSEKLGRQRHGFEYAALEVQNHLERLL 1014
Query: 352 FSDIVSSVMIIFSQQRSCQPHTSPWVCHFHLHQGKMKKIGLDVQSIINALRQECDSTRQT 531
FSDIVS V IIFS Q + H SPWVCHFH+++ +KK L V II+AL ++C S
Sbjct: 1015 FSDIVSFVRIIFSPQSDGRMHFSPWVCHFHVYKEIVKKRSLKVHYIIDALEKQCKS---- 1070
Query: 532 LKVELPKLHILTRICSATNAQNEKDEDICITVE-AEVSRSSLLVMDTFRHTVIPFLLGTV 708
K PK+ I +R C+ + EK E CITV E S++ + ++T + +IPFLL TV
Sbjct: 1071 -KTRFPKVQITSRYCTVADTWKEKKETFCITVTIVETSKNEFIELETIQDLMIPFLLETV 1129
Query: 709 IKGFMEFKKVDILWSESNISDKAS---RGELYMKVHLYEHCKSGTGWSLVVNKCLQIMDL 879
IKGFME +KVDILW++ K+ RGEL+++VH+ W+ +++ CL IMDL
Sbjct: 1130 IKGFMEIQKVDILWNDKPKIPKSHNRLRGELFLRVHMSRGSDKTRLWNQLMDDCLSIMDL 1189
Query: 880 IDWNRSHPDSMHDLFCTYGIDCSWEYFLKNLKVAVSDIGKSILPEHLLLVADCLTVTGQF 1059
IDW RSHPD++H+ YGID W++FL NL+ A+SD+GK++LPEHLLLVA+CL+VTG+F
Sbjct: 1190 IDWARSHPDNIHECCLAYGIDAGWKFFLNNLQSAMSDVGKTVLPEHLLLVANCLSVTGEF 1249
Query: 1060 IGLNAKGIAKQRDLVSVPSPFTQACFSSPGPSFIKAAKYGAEDGLLGVLNAAAWGKEIPL 1239
+GLNAKG+ +QR+ SV +PF QACFS+PG FI+AAK G D L G ++A AWGK +
Sbjct: 1250 VGLNAKGLKRQREHASVSTPFVQACFSNPGDCFIRAAKAGVVDDLQGSIDALAWGKVPAI 1309
Query: 1240 GTGGQFDIIYSGKVHEFSETLDIYNTLSGHLCPERQNVKISVPPTTQKRMSGKGDTDVLQ 1419
GT GQFDI+YSGK EFS+ +D+YN L + QN + V K D Q
Sbjct: 1310 GT-GQFDIVYSGKGLEFSKPVDVYNLLGSQMISTEQNTEFGV----LDAQIYKSDKCGAQ 1364
Query: 1420 TFDSFIGKGPNNLK--------------GLSDLVMLHKNLQEILHRYPVNDFLNEKDKSI 1557
F G GP K D+ + +++IL++Y V+ LNE DKS+
Sbjct: 1365 FLHKFGGCGPKGFKVKEGIPRSFLRRLLTYDDIQRMSYTVRKILNKYSVDQQLNESDKSV 1424
Query: 1558 LTSALSYHPRSXXXXXXXXXXXXXXXHQKYKYSHCFILVRKDGSEDDFSYRKCVRGFAKT 1737
L L +HPR H +Y+ + CF LVR DG+ +DFSYRKC+ +
Sbjct: 1425 LMMTLYFHPRRDEKIGIGAKDIKVINHPEYQDTRCFSLVRTDGTIEDFSYRKCLHNALEI 1484
Query: 1738 LALPPWLKDKVCEALSTT 1791
+A P + CE T+
Sbjct: 1485 IA--PQRAKRYCEKYLTS 1500
>gb|AAY89360.1| RNA polymerase IV largest subunit [Solanum lycopersicum]
Length = 1138
Score = 494 bits (1271), Expect = e-137
Identities = 270/599 (45%), Positives = 368/599 (61%), Gaps = 18/599 (3%)
Frame = +1
Query: 1 DGTVRYSYGNQVVQFSYGVSED-SSVLTSGNSA----HQLGD-PVGSLAACSISEAAYSA 162
DGTVR +YGNQ+VQFSY +E +S +G + H +G PVGSLAAC+ISEAAY A
Sbjct: 526 DGTVRNAYGNQIVQFSYYEAEQIASTKVTGEALESHNHAIGGHPVGSLAACAISEAAYCA 585
Query: 163 LEKPISTFESSPLLNLKMLLDSSYKKTTVGQTVSLFLSKKLERWLYGPEYGSLTVRSHLE 342
L++P+S ESSPLLNLK +L+S T +T S+FLSK+L RW +G EYG+L V+ HLE
Sbjct: 586 LDQPVSALESSPLLNLKKILESGAGSRTGEKTASMFLSKRLGRWAHGFEYGALEVKGHLE 645
Query: 343 RVLFSDIVSSVMIIFSQQRSCQPHTSPWVCHFHLHQGKMKKIGLDVQSIINALRQECDST 522
R+L S++VS+VMI FS + H PWVCHFH+ + +K L ++S+++AL +
Sbjct: 646 RLLLSEVVSTVMICFSPETRKSTHNCPWVCHFHIDKENVKTRRLKLRSVLDALNMRYRAA 705
Query: 523 RQTLKVELPKLHILTRICSATNAQNEKDEDICITVE-AEVSRSSLLVMDTFRHTVIPFLL 699
+LP LHI + CS Q EK E ICITV E S+ ++DT R VIPFLL
Sbjct: 706 TTKAGNDLPNLHITCKDCSVAEVQKEKSE-ICITVSVVETSKDPSSLLDTLRDVVIPFLL 764
Query: 700 GTVIKGFMEFKKVDILWSESNISDKASR---GELYMKVHLYEHCKSGTGWSLVVNKCLQI 870
TVIKGF FKKVDILW E K+SR GELY++V + E C W+ +V+ CLQI
Sbjct: 765 ETVIKGFSAFKKVDILWKELPSPSKSSRGPTGELYLQVFMSESCDRIKFWNALVDSCLQI 824
Query: 871 MDLIDWNRSHPDSMHDLFCTYGIDCSWEYFLKNLKVAVSDIGKSILPEHLLLVADCLTVT 1050
DLIDW RS+PD +HDL YGID +WEYFL L AVS+ GK ILPEHL+L AD LT T
Sbjct: 825 RDLIDWERSYPDDVHDLTVAYGIDVAWEYFLCKLHSAVSETGKKILPEHLVLAADSLTTT 884
Query: 1051 GQFIGLNAKGIAKQRDLVSVPSPFTQACFSSPGPSFIKAAKYGAEDGLLGVLNAAAWGKE 1230
G+F+ L+AKG+ QR V SPF QACF++PG SF++AAK G D L G L + AWGK
Sbjct: 885 GEFVPLSAKGLTLQRKAAGVVSPFMQACFTNPGDSFVRAAKMGLSDDLQGSLESLAWGKT 944
Query: 1231 IPLGTGGQFDIIYSGKVHEFSETLDIYNTLSGHLCPERQNVKISVPP-------TTQKRM 1389
+GTG FDI+YSGK +E +E +++Y L + + NVK+++ + +R+
Sbjct: 945 PSIGTGSSFDIMYSGKGYELAEQINVYTLLRNLVTVDTPNVKVTLGKDGGMDGMSLVRRL 1004
Query: 1390 SGKGDTDVLQTFDSFIGKGPNNLKGLSDLVMLHKNLQEILHRYPVNDFLNEKDKSILTSA 1569
D D + +D+ L ++L+++L +Y + LNE DK + A
Sbjct: 1005 DRLDDLDKKSCKSELSFTKLRSYFSFNDIKKLSQSLKQMLSKYDIGRELNEADKCLAMMA 1064
Query: 1570 LSYHP-RSXXXXXXXXXXXXXXXHQKYKYSHCFILVRKDGSEDDFSYRKCVRGFAKTLA 1743
L +HP R+ HQ+++ S CF++VR D + +DFSYRKC++ + +A
Sbjct: 1065 LQFHPRRNEKIGKGAPKEIKIGYHQEFEGSRCFMVVRSDDTVEDFSYRKCMQHALELIA 1123