BLASTX nr result

ID: Coptis23_contig00005602 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00005602
         (1000 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002890146.1| hypothetical protein ARALYDRAFT_471810 [Arab...   408   e-112
ref|NP_563991.1| uncharacterized protein [Arabidopsis thaliana] ...   407   e-111
ref|XP_002271931.1| PREDICTED: uncharacterized protein LOC100263...   400   e-109
ref|XP_002303871.1| predicted protein [Populus trichocarpa] gi|2...   399   e-109
ref|XP_002333371.1| predicted protein [Populus trichocarpa] gi|2...   398   e-108

>ref|XP_002890146.1| hypothetical protein ARALYDRAFT_471810 [Arabidopsis lyrata subsp.
           lyrata] gi|297335988|gb|EFH66405.1| hypothetical protein
           ARALYDRAFT_471810 [Arabidopsis lyrata subsp. lyrata]
          Length = 313

 Score =  408 bits (1049), Expect = e-112
 Identities = 195/251 (77%), Positives = 210/251 (83%)
 Frame = -2

Query: 945 KVVPAIIVGGGRVGTALLDMGNGRDLMIKRGEAVPSGFPGPILVCTRNDDLDAVLDNTPQ 766
           K+ PA+IVGGGRVG AL +MGNG DL++KRGEAVP  F GPILVCTRNDDLDAVL+ TPQ
Sbjct: 53  KLAPAVIVGGGRVGRALQEMGNGEDLLVKRGEAVPVDFEGPILVCTRNDDLDAVLEATPQ 112

Query: 765 SRWNDLVFFQNGMLEPWLHSKGLNDVEQVLAYFAVSKLGEPPVDGKTDTNPEGLTAAYGK 586
           SRW DLVFFQNGM+EPW  SKGL D +QVLAYFAVSKLGEPPVDGKTDTNPEGLTAAYGK
Sbjct: 113 SRWKDLVFFQNGMMEPWFESKGLGDTDQVLAYFAVSKLGEPPVDGKTDTNPEGLTAAYGK 172

Query: 585 WASAVATRLQAGGLSCKVLDKEAFQKQMLEKLIWICAFMLVGANHPGATVGVVEKGYRXX 406
           WAS +A RLQ+GGLSCKVLDKEAFQKQMLEKLIWICAFMLVGA HPGA+VG VEK YR  
Sbjct: 173 WASEIAARLQSGGLSCKVLDKEAFQKQMLEKLIWICAFMLVGARHPGASVGTVEKEYRDE 232

Query: 405 XXXXXXXXXXXXXXXXXXLFEEAMVERLCAYSRAVAHFPTAVKEFKWRNGWFYSLTQQAI 226
                              FEE MVERLCAYSRAV+HFPTAVKEFKWRNGWFYSL+++AI
Sbjct: 233 VSILIQELAAAAAAEKGLTFEENMVERLCAYSRAVSHFPTAVKEFKWRNGWFYSLSEKAI 292

Query: 225 TEGKPDPCPLH 193
            EGKPDPCPLH
Sbjct: 293 AEGKPDPCPLH 303


>ref|NP_563991.1| uncharacterized protein [Arabidopsis thaliana]
           gi|6587814|gb|AAF18505.1|AC010924_18 ESTs gb|AI992412,
           gb|AI994629 come from this gene [Arabidopsis thaliana]
           gi|12083328|gb|AAG48823.1|AF332460_1 unknown protein
           [Arabidopsis thaliana] gi|18176355|gb|AAL60029.1|
           unknown protein [Arabidopsis thaliana]
           gi|332191287|gb|AEE29408.1| uncharacterized protein
           [Arabidopsis thaliana]
          Length = 313

 Score =  407 bits (1045), Expect = e-111
 Identities = 194/251 (77%), Positives = 210/251 (83%)
 Frame = -2

Query: 945 KVVPAIIVGGGRVGTALLDMGNGRDLMIKRGEAVPSGFPGPILVCTRNDDLDAVLDNTPQ 766
           K+ PA+IVGGGRVG AL +MGNG DL++KRGEAVP  F GPILVCTRNDDLDAVL+ TPQ
Sbjct: 53  KLAPAVIVGGGRVGRALQEMGNGEDLLVKRGEAVPVDFEGPILVCTRNDDLDAVLEATPQ 112

Query: 765 SRWNDLVFFQNGMLEPWLHSKGLNDVEQVLAYFAVSKLGEPPVDGKTDTNPEGLTAAYGK 586
           SRW DLVFFQNGM+EPW  SKGL D +QVLAYFAVSKLGEPPVDGKTDTNPEGLTAAYGK
Sbjct: 113 SRWKDLVFFQNGMMEPWFESKGLGDTDQVLAYFAVSKLGEPPVDGKTDTNPEGLTAAYGK 172

Query: 585 WASAVATRLQAGGLSCKVLDKEAFQKQMLEKLIWICAFMLVGANHPGATVGVVEKGYRXX 406
           WAS +A RLQ+GGLSCKVLDKEAFQKQMLEKLIWICAFMLVGA HPGA+VG VEK YR  
Sbjct: 173 WASEIAARLQSGGLSCKVLDKEAFQKQMLEKLIWICAFMLVGARHPGASVGTVEKEYRDE 232

Query: 405 XXXXXXXXXXXXXXXXXXLFEEAMVERLCAYSRAVAHFPTAVKEFKWRNGWFYSLTQQAI 226
                              FEE MVERLCAYSRAV+HFPTAVKEFKWRNGWFYSL+++AI
Sbjct: 233 VSRLIQELAAAAAAEKGLTFEENMVERLCAYSRAVSHFPTAVKEFKWRNGWFYSLSEKAI 292

Query: 225 TEGKPDPCPLH 193
            EG+PDPCPLH
Sbjct: 293 AEGQPDPCPLH 303


>ref|XP_002271931.1| PREDICTED: uncharacterized protein LOC100263834 [Vitis vinifera]
          Length = 301

 Score =  400 bits (1028), Expect = e-109
 Identities = 192/252 (76%), Positives = 213/252 (84%)
 Frame = -2

Query: 948 TKVVPAIIVGGGRVGTALLDMGNGRDLMIKRGEAVPSGFPGPILVCTRNDDLDAVLDNTP 769
           T+V PA+IVGGGRVG AL  MG+G DL++KRG++VP  F GPILVCTRNDDLDAVL++TP
Sbjct: 40  TQVAPAVIVGGGRVGRALQGMGSGDDLLVKRGDSVPLDFAGPILVCTRNDDLDAVLESTP 99

Query: 768 QSRWNDLVFFQNGMLEPWLHSKGLNDVEQVLAYFAVSKLGEPPVDGKTDTNPEGLTAAYG 589
           +SRW+DLVFFQNGMLEPWL SKGL+D +QVLAYFAVSKLGEPP+DGKTDTNPEGLTAAYG
Sbjct: 100 KSRWSDLVFFQNGMLEPWLQSKGLSDADQVLAYFAVSKLGEPPIDGKTDTNPEGLTAAYG 159

Query: 588 KWASAVATRLQAGGLSCKVLDKEAFQKQMLEKLIWICAFMLVGANHPGATVGVVEKGYRX 409
           KWASAVA RL AGGLSCKVLDKEAFQKQMLEKLIWI AFMLVGA HPGATVGVVEK +R 
Sbjct: 160 KWASAVAGRLHAGGLSCKVLDKEAFQKQMLEKLIWISAFMLVGARHPGATVGVVEKEFRS 219

Query: 408 XXXXXXXXXXXXXXXXXXXLFEEAMVERLCAYSRAVAHFPTAVKEFKWRNGWFYSLTQQA 229
                              +F+E M +RLCAYSRAV+HFPTA KEFKWRNGWFYSL+Q+A
Sbjct: 220 EVSSLIGELASAAAVEKGIVFDEGMEDRLCAYSRAVSHFPTAAKEFKWRNGWFYSLSQKA 279

Query: 228 ITEGKPDPCPLH 193
           I EGKPDPCPLH
Sbjct: 280 IAEGKPDPCPLH 291


>ref|XP_002303871.1| predicted protein [Populus trichocarpa] gi|222841303|gb|EEE78850.1|
           predicted protein [Populus trichocarpa]
          Length = 269

 Score =  399 bits (1026), Expect = e-109
 Identities = 191/251 (76%), Positives = 210/251 (83%)
 Frame = -2

Query: 945 KVVPAIIVGGGRVGTALLDMGNGRDLMIKRGEAVPSGFPGPILVCTRNDDLDAVLDNTPQ 766
           KVVPA+IVGGGRVG AL +MG+G+DL++KRG+ VP  F GP+LVCTRNDDLDAVL+ TP+
Sbjct: 9   KVVPAVIVGGGRVGRALQEMGSGQDLLVKRGDPVPLDFEGPVLVCTRNDDLDAVLEVTPK 68

Query: 765 SRWNDLVFFQNGMLEPWLHSKGLNDVEQVLAYFAVSKLGEPPVDGKTDTNPEGLTAAYGK 586
           SRW+DLVFFQNGMLEPW  SKGL D +QVLAYFAVSKLGEPP+DGKTDTNPEGLTAAYGK
Sbjct: 69  SRWSDLVFFQNGMLEPWFQSKGLGDADQVLAYFAVSKLGEPPIDGKTDTNPEGLTAAYGK 128

Query: 585 WASAVATRLQAGGLSCKVLDKEAFQKQMLEKLIWICAFMLVGANHPGATVGVVEKGYRXX 406
           WASAVA RL AGGLSCKVLDKE FQKQMLEKLIWI AFMLVGA HPGATVG VEK +R  
Sbjct: 129 WASAVAARLHAGGLSCKVLDKETFQKQMLEKLIWISAFMLVGARHPGATVGAVEKEFRSE 188

Query: 405 XXXXXXXXXXXXXXXXXXLFEEAMVERLCAYSRAVAHFPTAVKEFKWRNGWFYSLTQQAI 226
                             +FEEA+ ERLCAYSRAVAHFPTAVKEFKWRNGWFYSL+ +A+
Sbjct: 189 VSSLIAELASAAAAEKGIVFEEAIEERLCAYSRAVAHFPTAVKEFKWRNGWFYSLSDKAV 248

Query: 225 TEGKPDPCPLH 193
            EGKPDPCPLH
Sbjct: 249 AEGKPDPCPLH 259


>ref|XP_002333371.1| predicted protein [Populus trichocarpa] gi|222836353|gb|EEE74760.1|
           predicted protein [Populus trichocarpa]
          Length = 269

 Score =  398 bits (1023), Expect = e-108
 Identities = 191/251 (76%), Positives = 209/251 (83%)
 Frame = -2

Query: 945 KVVPAIIVGGGRVGTALLDMGNGRDLMIKRGEAVPSGFPGPILVCTRNDDLDAVLDNTPQ 766
           KV PA+IVGGGRVG AL +MG+G+DL++KRG+ VP  F GPILVCTRNDDLDAVL+ TP+
Sbjct: 9   KVAPAVIVGGGRVGRALQEMGSGQDLLVKRGDPVPLDFEGPILVCTRNDDLDAVLEVTPK 68

Query: 765 SRWNDLVFFQNGMLEPWLHSKGLNDVEQVLAYFAVSKLGEPPVDGKTDTNPEGLTAAYGK 586
           SRW+DLVFFQNGMLEPW  SKGL D +QVLAYFAVSKLGEPP+DGKTDTNPEGLTAAYGK
Sbjct: 69  SRWSDLVFFQNGMLEPWFQSKGLGDADQVLAYFAVSKLGEPPIDGKTDTNPEGLTAAYGK 128

Query: 585 WASAVATRLQAGGLSCKVLDKEAFQKQMLEKLIWICAFMLVGANHPGATVGVVEKGYRXX 406
           WASAVA RL AGGLSCKVLDKE FQKQMLEKLIWI AFMLVGA HPGATVG VEK +R  
Sbjct: 129 WASAVAARLHAGGLSCKVLDKETFQKQMLEKLIWISAFMLVGARHPGATVGAVEKEFRSE 188

Query: 405 XXXXXXXXXXXXXXXXXXLFEEAMVERLCAYSRAVAHFPTAVKEFKWRNGWFYSLTQQAI 226
                             +FEEA+ ERLCAYSRAVAHFPTAVKEFKWRNGWFYSL+ +A+
Sbjct: 189 VSSLIAELASAAAAEKGIVFEEAIEERLCAYSRAVAHFPTAVKEFKWRNGWFYSLSDKAV 248

Query: 225 TEGKPDPCPLH 193
            EGKPDPCPLH
Sbjct: 249 AEGKPDPCPLH 259


Top