BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00005574
         (1328 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFK43045.1| unknown [Lotus japonicus]                              124   4e-26
gb|ADE61669.1| nucleocapsid protein [Northern cereal mosaic virus]     83   1e-13
ref|NP_057954.1| nucleocapsid protein [Northern cereal mosaic vi...    82   2e-13
gb|ADA60173.1| coat protein [Lettuce big-vein associated virus]        77   1e-11
gb|ABG67679.1| coat protein [Lettuce big-vein associated virus]        77   1e-11

>gb|AFK43045.1| unknown [Lotus japonicus]
          Length = 166

 Score =  124 bits (312), Expect = 4e-26
 Identities = 61/160 (38%), Positives = 98/160 (61%)
 Frame = -3

Query: 627 KATLYRFLYNANRDGDVESLERYLYDIHLSHTGMHVVPIAYEICMVMNCTPSTLLIVMYA 448
           K TL++ LY ++ +     L+R+LYD+HL++ G+HVV I+  +C V+N     L+ +M  
Sbjct: 5   KVTLFKLLYASSSNNRALGLKRFLYDLHLANPGLHVVNISIRLCKVLNVPGQKLIDIMNV 64

Query: 447 NRFRPQITGLFEAFKLMKNNDENHKRQMWKYGRIFDSDFLASLQTRRCPKFVYSMACILQ 268
             FR Q   L E  +L+    ++HKR+MW++GRIFDS F+A LQT+ C K VY +A  L+
Sbjct: 65  GEFRRQAVALAEMIRLVVIKADDHKRKMWRFGRIFDSTFMAELQTKACSKLVYILAYALK 124

Query: 267 RESPKYHAGILGIKQLEEVGQEDQIRLLEEAKTLIDAIKS 148
            E P  +  IL I QL+    + + +L   A+ +I +++S
Sbjct: 125 SEQPHGNENILDIVQLQNFSPDMKHKLSAAAQKVIKSLRS 164


>gb|ADE61669.1| nucleocapsid protein [Northern cereal mosaic virus]
          Length = 431

 Score = 83.2 bits (204), Expect = 1e-13
 Identities = 61/236 (25%), Positives = 106/236 (44%), Gaps = 5/236 (2%)
 Frame = -3

Query: 894 DKTVDESSGRSIEPTEYGDSYQIAQGYSYLAASMLKLFARSAENYEKSWSHIVHGYRKFY 715
           D    +++   ++     D   I +  S+++A ++KL  +   N    W+ ++  Y  FY
Sbjct: 142 DLIFGDNTDHDLQQVRSQDDETIIRFGSFISAFLMKLIVKQQSNVVDGWNGMLERYTNFY 201

Query: 714 SDNCPISGV-RPQTDVIKRIHDHFSISELMKATLYRFLY---NANRDGDVE-SLERYLYD 550
            ++ PI+ V +P  D +  + ++      +  T  R +    NA   GD    + RYL  
Sbjct: 202 GES-PITAVPKPNADWLAGLKNYLISDPKIGHTWVRVISAAENALSVGDKSFQMVRYLAS 260

Query: 549 IHLSHTGMHVVPIAYEICMVMNCTPSTLLIVMYANRFRPQITGLFEAFKLMKNNDENHKR 370
           + LS TGMH   +  E+    N     LL  M + +  P + G+ +  K  ++     K 
Sbjct: 261 LPLSLTGMHAYKLFLEVQKQSNLGMQWLLEEMVSPKTLPALEGIAKILKYFESRTSTRKP 320

Query: 369 QMWKYGRIFDSDFLASLQTRRCPKFVYSMACILQRESPKYHAGILGIKQLEEVGQE 202
             ++Y RI    +   LQT+ CP+ VY + C+LQ    KY A   G +  + VG E
Sbjct: 321 PYFRYARIMSPAYFQELQTKNCPELVYLLVCLLQ----KYEAFGAGQEPTKIVGIE 372


>ref|NP_057954.1| nucleocapsid protein [Northern cereal mosaic virus]
           gi|81975130|sp|Q9JGU1.1|NCAP_NCMV RecName:
           Full=Nucleoprotein; Short=NP; AltName: Full=Nucleocapsid
           protein; Short=Protein N gi|7707668|dbj|BAA95344.1|
           nucleocapsid protein [Northern cereal mosaic virus]
          Length = 431

 Score = 82.4 bits (202), Expect = 2e-13
 Identities = 61/236 (25%), Positives = 106/236 (44%), Gaps = 5/236 (2%)
 Frame = -3

Query: 894 DKTVDESSGRSIEPTEYGDSYQIAQGYSYLAASMLKLFARSAENYEKSWSHIVHGYRKFY 715
           D    +++   ++     D   I +  S+++A ++KL  +   N    W+ ++  Y  FY
Sbjct: 142 DLIFGDNTDHDLQQVRSQDDETIIRFGSFISAFLMKLIVKQQSNIVDGWNGMLERYTNFY 201

Query: 714 SDNCPISGV-RPQTDVIKRIHDHFSISELMKATLYRFLY---NANRDGDVE-SLERYLYD 550
            ++ PI+ V +P  D +  + ++      +  T  R +    NA   GD    + RYL  
Sbjct: 202 GES-PITAVPKPNADWLAGLKNYLISDPKIGHTWVRVISAAENALSVGDKSFQMVRYLAS 260

Query: 549 IHLSHTGMHVVPIAYEICMVMNCTPSTLLIVMYANRFRPQITGLFEAFKLMKNNDENHKR 370
           + LS TGMH   +  E+    N     LL  M + +  P + G+ +  K  ++     K 
Sbjct: 261 LPLSLTGMHAYKLFLEVQKQSNLGMQWLLEEMVSPKTLPALEGIAKILKNFESRTSTRKP 320

Query: 369 QMWKYGRIFDSDFLASLQTRRCPKFVYSMACILQRESPKYHAGILGIKQLEEVGQE 202
             ++Y RI    +   LQT+ CP+ VY + C+LQ    KY A   G +  + VG E
Sbjct: 321 PYFRYARIMSPAYFQELQTKNCPELVYLLVCLLQ----KYEAFGAGQEPTKIVGIE 372


>gb|ADA60173.1| coat protein [Lettuce big-vein associated virus]
          Length = 397

 Score = 77.0 bits (188), Expect = 1e-11
 Identities = 62/236 (26%), Positives = 101/236 (42%), Gaps = 9/236 (3%)
 Frame = -3

Query: 954 RLMPDSDSLAMLADIEIGILDKT-VDESSGRSIEPTEYGDSYQIAQGYSYLAASMLKLFA 778
           R+ P  D     AD+++  L+   VD          +     +I +  +++AAS LK+FA
Sbjct: 88  RIFPAKDKGKDAADVDVKNLEVVGVDYIDAMVETNVKDASDIEIIRAGAFIAASTLKMFA 147

Query: 777 RSAENYEKSW--SHIVHGYRKFYSDNCPISGVRPQTDVIKRIHDHFSISELMKATLYRFL 604
           +S   + ++W   HI   Y  F     P       T   + +++ +   +L + TL R L
Sbjct: 148 KSFTGWTQAWEHKHIQKRYADFCKTEYPFKEFTTNTKCAETMYEAYQGQKLYQGTLGRIL 207

Query: 603 YNANRDGDVESLERYLYDIHLSHTGMHVVPIAYEICMVMNCTPSTLLIVM-YANRFRPQI 427
           Y      D    E  L+D HL++TGMH++P      + +  T + LL  + Y   F    
Sbjct: 208 YALGDVADPRQTE-MLFDQHLANTGMHIIPQFTNAQLSIGATTAGLLSALNYGQNF---- 262

Query: 426 TGLFEAFKLMKNNDEN-----HKRQMWKYGRIFDSDFLASLQTRRCPKFVYSMACI 274
            G     K + N   +       R  W++ RIFD     +LQT+ C   V  +A I
Sbjct: 263 -GTLMQLKKLINESLSKPPGPDNRATWRFARIFDPSVFQTLQTKYCADTVAILANI 317


>gb|ABG67679.1| coat protein [Lettuce big-vein associated virus]
          Length = 293

 Score = 77.0 bits (188), Expect = 1e-11
 Identities = 62/236 (26%), Positives = 101/236 (42%), Gaps = 9/236 (3%)
 Frame = -3

Query: 954 RLMPDSDSLAMLADIEIGILDKT-VDESSGRSIEPTEYGDSYQIAQGYSYLAASMLKLFA 778
           R+ P  D     AD+++  L+   VD          +     +I +  +++AAS LK+FA
Sbjct: 27  RIFPAKDKGKDTADVDVKNLEVAGVDYIDAMVETNVKDASDIEIIRAGAFIAASTLKMFA 86

Query: 777 RSAENYEKSW--SHIVHGYRKFYSDNCPISGVRPQTDVIKRIHDHFSISELMKATLYRFL 604
           +S   + ++W   HI   Y  F     P       T   + +++ +   +L + TL R L
Sbjct: 87  KSFTGWTQAWEHKHIQKRYADFCKTEYPFKEFTTNTKCAETMYEAYQGQKLYQGTLGRIL 146

Query: 603 YNANRDGDVESLERYLYDIHLSHTGMHVVPIAYEICMVMNCTPSTLLIVM-YANRFRPQI 427
           Y      D    E  L+D HL++TGMH++P      + +  T + LL  + Y   F    
Sbjct: 147 YALGDVADPRQTE-MLFDQHLANTGMHIIPQFTNAQLSIGATTAGLLSALNYGQNF---- 201

Query: 426 TGLFEAFKLMKNNDEN-----HKRQMWKYGRIFDSDFLASLQTRRCPKFVYSMACI 274
            G     K + N   +       R  W++ RIFD     +LQT+ C   V  +A I
Sbjct: 202 -GTLMQLKKLINESLSKPPGPDNRATWRFARIFDPSVFQTLQTKYCADTVAILANI 256