BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00005571
         (2499 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003588352.1| NADH dehydrogenase subunit [Medicago truncat...   211   8e-52
ref|XP_004153848.1| PREDICTED: LOW QUALITY PROTEIN: NADH-ubiquin...   156   3e-44
emb|CAN64512.1| hypothetical protein VITISV_004351 [Vitis vinifera]   179   4e-42
emb|CBI23503.3| unnamed protein product [Vitis vinifera]              152   4e-34
ref|NP_064003.1| orf300 gene product (mitochondrion) [Beta vulga...   134   9e-29

>ref|XP_003588352.1| NADH dehydrogenase subunit [Medicago truncatula]
            gi|355477400|gb|AES58603.1| NADH dehydrogenase subunit
            [Medicago truncatula]
          Length = 1094

 Score =  211 bits (537), Expect = 8e-52
 Identities = 149/332 (44%), Positives = 162/332 (48%), Gaps = 7/332 (2%)
 Frame = +3

Query: 861  YPKHWSDPVAGKGPRSAYYYTTLHLALHIYRANPCPVPGRAKGG--FNPYSLSPSPPRLT 1034
            YPK+WS PVAGKGPRSA YYTTLH ALHIYRANPCPVPGR KG     PYSL+ +     
Sbjct: 883  YPKNWSGPVAGKGPRSANYYTTLHSALHIYRANPCPVPGRVKGASILIPYSLAQA----N 938

Query: 1035 GPYLFRG-ESGASRSTVERTRPLFILYRGLCPHGSGAEMEEIEHGNKKQARLPFLSFL*R 1211
            G  L +G ESGA RSTVER     IL                                  
Sbjct: 939  GALLIQGGESGAPRSTVERK----IL---------------------------------- 960

Query: 1212 GVEKVDKTDSHFPA*KTILNATHSSTPGFALRWVGRGPLTVEIF*NLRPGGKNNLTVANL 1391
            G+EKVDKTDSH                 F +  +G                         
Sbjct: 961  GMEKVDKTDSH-----------------FPVEKMG------------------------- 978

Query: 1392 KYASSHVV*SGFLFRLDKEEKNPIENAPNP----FVEPCIVSDPNLPGASPP*RQVKLVS 1559
                     S F+      + N IEN PNP    FVEPCIV        + P  Q+ + +
Sbjct: 979  ---------SFFVLHFSSRKNNNIENVPNPPTLSFVEPCIVI------RTCPETQLLVST 1023

Query: 1560 RMMGNYLLRFGEDSAVS*YPLGFGVDPFTLFYYIRLVKRMFFDTPRTWILYEPMDRDKSL 1739
               G                      PFTLFYYIRL KRMFFDTPRTWILYEPMDRDKSL
Sbjct: 1024 PFRGG---------------------PFTLFYYIRLAKRMFFDTPRTWILYEPMDRDKSL 1062

Query: 1740 LLAMTSSFITLFFLYPSPLFSVTHQMALSLYL 1835
            LLAMTSSFIT  F YPSPLFSVTHQMALS YL
Sbjct: 1063 LLAMTSSFITSSFPYPSPLFSVTHQMALSSYL 1094



 Score =  172 bits (436), Expect = 4e-40
 Identities = 106/186 (56%), Positives = 110/186 (59%)
 Frame = +1

Query: 1    LASVGVVTSVIGRWAAGRLP*VS*FGGPKAVLRAPDT*LTESVATRMGMHATKEKVESDT 180
            LA VGVVTSVIG WAAGRLP VS FGGPKAVLRAPDT                  VES+T
Sbjct: 692  LAPVGVVTSVIGCWAAGRLPRVSQFGGPKAVLRAPDT------------------VESET 733

Query: 181  STVYSISLYESTITTRDEPWFGELKLALGVIGLPVTARDRILRCSPPVVGTTRAGPRFRK 360
            STVYSISLYESTITTRDEPWFGELK ALGV       +     C+        AG     
Sbjct: 734  STVYSISLYESTITTRDEPWFGELKFALGV------KKRTPSYCARSYTEVLPAGCWNDA 787

Query: 361  MKGQRLQIPHLIGGRKTNRHLDVIQPFLFSLGKNGEVHPNRPMXXXXXXXXXXXXXXXXN 540
             +G      H   GRKTNRHLDVIQPFLF LGKNGEVHPNRPM                 
Sbjct: 788  SRGVNNSPSH--WGRKTNRHLDVIQPFLFLLGKNGEVHPNRPMKNKRRAKRQWRAKRMRK 845

Query: 541  GHGEKK 558
            GHGEKK
Sbjct: 846  GHGEKK 851



 Score = 59.7 bits (143), Expect = 4e-06
 Identities = 33/59 (55%), Positives = 41/59 (69%)
 Frame = +2

Query: 476 RTVQ*RIRGEQSANGARSACGTGTEKKRSLEEKQPSSFPSLPGPKAVQCFLANSRIGGF 652
           R ++ + R ++     R   G G EKK S+E+KQPSSFPSLPGPKAVQ FLA SRI G+
Sbjct: 826 RPMKNKRRAKRQWRAKRMRKGHG-EKKISVEDKQPSSFPSLPGPKAVQSFLAKSRIWGY 883


>ref|XP_004153848.1| PREDICTED: LOW QUALITY PROTEIN: NADH-ubiquinone oxidoreductase
           chain 2-like, partial [Cucumis sativus]
          Length = 472

 Score =  156 bits (395), Expect(2) = 3e-44
 Identities = 99/165 (60%), Positives = 101/165 (61%), Gaps = 2/165 (1%)
 Frame = +1

Query: 1   LASVGVVTSVIGRWAAGRLP*VS*FGGPKAVLRAPDT*LTESVATRMGMHATKEKVESDT 180
           LA VGVVTSVIGRWAAGRLP VS FG PKAVLRAPDT                  VESDT
Sbjct: 271 LAPVGVVTSVIGRWAAGRLPRVSLFGRPKAVLRAPDT------------------VESDT 312

Query: 181 STVYSISLYESTITTRDEPWFGELKLA--LGVIGLPVTARDRILRCSPPVVGTTRAGPRF 354
           STVYSISLYESTITTRDEPWFGELKLA   GV   P         C+        AG   
Sbjct: 313 STVYSISLYESTITTRDEPWFGELKLAPRSGVXRTP-------SYCARSYTEVLPAGCWN 365

Query: 355 RKMKGQRLQIPHLIGGRKTNRHLDVIQPFLFSLGKNGEVHPNRPM 489
              +G      H   GRKTNRHLDV QP  F LGKNGEVHPNRPM
Sbjct: 366 DASRGVTNSPSH--WGRKTNRHLDVRQPLKFELGKNGEVHPNRPM 408



 Score = 51.2 bits (121), Expect(2) = 3e-44
 Identities = 26/35 (74%), Positives = 28/35 (80%)
 Frame = +2

Query: 545 TEKKRSLEEKQPSSFPSLPGPKAVQCFLANSRIGG 649
           T  K S+E+K PSSFPSLPGPKAVQ FLA SRI G
Sbjct: 428 TRIKISVEKKLPSSFPSLPGPKAVQSFLAKSRIFG 462


>emb|CAN64512.1| hypothetical protein VITISV_004351 [Vitis vinifera]
          Length = 282

 Score =  179 bits (453), Expect = 4e-42
 Identities = 95/116 (81%), Positives = 97/116 (83%)
 Frame = +1

Query: 1   LASVGVVTSVIGRWAAGRLP*VS*FGGPKAVLRAPDT*LTESVATRMGMHATKEKVESDT 180
           LA VGVVTSVIGRWAAGRLP                  LTESVATRMGMHATK++VESDT
Sbjct: 178 LAPVGVVTSVIGRWAAGRLPR-----------------LTESVATRMGMHATKDRVESDT 220

Query: 181 STVYSISLYESTITTRDEPWFGELKLALGVIGLPVTARDRILRCSPPVVGTTRAGP 348
           STVYSISLYESTITTRDEPWFGELKLALGVIGLPVTARDRILRCSPPVVGTTRAGP
Sbjct: 221 STVYSISLYESTITTRDEPWFGELKLALGVIGLPVTARDRILRCSPPVVGTTRAGP 276


>emb|CBI23503.3| unnamed protein product [Vitis vinifera]
          Length = 526

 Score =  152 bits (384), Expect = 4e-34
 Identities = 75/78 (96%), Positives = 77/78 (98%)
 Frame = +1

Query: 115 LTESVATRMGMHATKEKVESDTSTVYSISLYESTITTRDEPWFGELKLALGVIGLPVTAR 294
           LTESVATRMGMHATK +VES+TSTVYSISLYESTITTRDEPWFGELKLALGVIGLPVTAR
Sbjct: 443 LTESVATRMGMHATKHRVESNTSTVYSISLYESTITTRDEPWFGELKLALGVIGLPVTAR 502

Query: 295 DRILRCSPPVVGTTRAGP 348
           DRILRCSPPVVGTTRAGP
Sbjct: 503 DRILRCSPPVVGTTRAGP 520


>ref|NP_064003.1| orf300 gene product (mitochondrion) [Beta vulgaris subsp. vulgaris]
           gi|323435152|ref|YP_004222370.1| hypothetical protein
           BevumaM_p137 [Beta vulgaris subsp. maritima]
           gi|346683243|ref|YP_004842175.1| hypothetical protein
           BemaM_p131 [Beta macrocarpa] gi|9049305|dbj|BAA99315.1|
           orf300 [Beta vulgaris subsp. vulgaris]
           gi|317905602|emb|CBJ14009.1| hypothetical protein [Beta
           vulgaris subsp. maritima] gi|319439885|emb|CBJ17585.1|
           hypothetical protein [Beta vulgaris subsp. maritima]
           gi|320148039|emb|CBJ20703.1| hypothetical protein [Beta
           vulgaris subsp. maritima] gi|345500161|emb|CBX24980.1|
           hypothetical protein [Beta macrocarpa]
           gi|384977913|emb|CBL54137.1| hypothetical protein
           (mitochondrion) [Beta vulgaris subsp. maritima]
          Length = 300

 Score =  134 bits (338), Expect = 9e-29
 Identities = 78/119 (65%), Positives = 83/119 (69%), Gaps = 3/119 (2%)
 Frame = +1

Query: 1   LASVGVVTSVIGRWAAGRLP*VS*FGGPKAVLRAPDT*LTESVATRMGMHATKEKVESDT 180
           LA VGVVTSVIG WAAGRLP VS FG  +         L   +  R G      K+ S  
Sbjct: 178 LAPVGVVTSVIGCWAAGRLPRVSQFGDRRQFSVHRTRSLPNQL--RHGWECMLRKIGSSL 235

Query: 181 ---STVYSISLYESTITTRDEPWFGELKLALGVIGLPVTARDRILRCSPPVVGTTRAGP 348
               +VYSISLYESTITTRDEPWFGE +LALGVIGLPVTA DRILRCSPPVVGTTRAGP
Sbjct: 236 IHQPSVYSISLYESTITTRDEPWFGEFELALGVIGLPVTAHDRILRCSPPVVGTTRAGP 294