BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00005564
         (793 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002271564.2| PREDICTED: ribosome biogenesis GTPase A-like...   405   e-111
ref|NP_001242175.1| uncharacterized protein LOC100784201 [Glycin...   398   e-109
ref|XP_002307583.1| predicted protein [Populus trichocarpa] gi|2...   397   e-108
gb|ABK94828.1| unknown [Populus trichocarpa]                          397   e-108
ref|XP_004150129.1| PREDICTED: ribosome biogenesis GTPase A-like...   395   e-108

>ref|XP_002271564.2| PREDICTED: ribosome biogenesis GTPase A-like [Vitis vinifera]
           gi|296086696|emb|CBI32331.3| unnamed protein product
           [Vitis vinifera]
          Length = 367

 Score =  405 bits (1042), Expect = e-111
 Identities = 201/269 (74%), Positives = 230/269 (85%), Gaps = 6/269 (2%)
 Frame = -3

Query: 791 ILGGKTPA------LSSKQTTFYQEEENDWLDLDAEFYRWTKSLRPVQWYPGHIAKTXXX 630
           I+GGK+        +SS +T     EE+ W +LDA+ Y WTK LRP+QWYPGHIAKT   
Sbjct: 45  IVGGKSHGQYVNGGVSSNRTFEDISEESYWTNLDADLYHWTKKLRPIQWYPGHIAKTEKE 104

Query: 629 XXXXXXLMDVVIDVRDARIPLATSHPEMDSWIGNKKRMLVLNREDMISTAERNAWATYFS 450
                 LMDVVI+V+DARIPL+TSHP+M+SW+GN+KR+LVLNREDMIST +RNAWATY++
Sbjct: 105 LKEQLKLMDVVIEVQDARIPLSTSHPQMESWLGNRKRILVLNREDMISTEDRNAWATYYA 164

Query: 449 KQGTKVVFSNGQLGMGALKLGRLAKSLAVGINAKRRAKGLLPRAVRAGIVGYPNVGKSSL 270
            QG KVVFSNGQLGMG++KL RLAK+LA G+N KRRAKGLLPR VRAGIVGYPNVGKSSL
Sbjct: 165 MQGIKVVFSNGQLGMGSMKLSRLAKTLASGVNVKRRAKGLLPRPVRAGIVGYPNVGKSSL 224

Query: 269 INRLLKRRMCPAAPRPGVTRVLKWIRFGKDLELLDSPGILPMRISDQGAAMKLAICDDIG 90
           INRLLKRRMCPAAPRPGVTR LKW++FGKDLELLDSPGI+PMRISDQ AA+KLAICDDIG
Sbjct: 225 INRLLKRRMCPAAPRPGVTRQLKWVQFGKDLELLDSPGIIPMRISDQSAAIKLAICDDIG 284

Query: 89  ERSYDVADVAAILVQMLTKLPTVGSKALY 3
           ERSYDVADVAAILVQMLT++P VG KALY
Sbjct: 285 ERSYDVADVAAILVQMLTRIPAVGPKALY 313


>ref|NP_001242175.1| uncharacterized protein LOC100784201 [Glycine max]
           gi|255634965|gb|ACU17841.1| unknown [Glycine max]
          Length = 391

 Score =  398 bits (1023), Expect = e-109
 Identities = 193/245 (78%), Positives = 215/245 (87%)
 Frame = -3

Query: 740 QEEENDWLDLDAEFYRWTKSLRPVQWYPGHIAKTXXXXXXXXXLMDVVIDVRDARIPLAT 561
           Q E + W +LD + Y WTK+LRPVQW+PGHIAK          LMDVVI+VRD RIP++T
Sbjct: 67  QGESDHWSELDTDLYHWTKALRPVQWFPGHIAKAEKELKEQLKLMDVVIEVRDGRIPMST 126

Query: 560 SHPEMDSWIGNKKRMLVLNREDMISTAERNAWATYFSKQGTKVVFSNGQLGMGALKLGRL 381
           SHP+MD W+GN+KR+LVLNREDMISTA+RNAWA YF++ GTKVVFSNGQLGMG +KLGRL
Sbjct: 127 SHPQMDPWLGNRKRILVLNREDMISTADRNAWADYFTRNGTKVVFSNGQLGMGTMKLGRL 186

Query: 380 AKSLAVGINAKRRAKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK 201
           AK LA  +N KRR+KGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR L+
Sbjct: 187 AKELAADVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRELR 246

Query: 200 WIRFGKDLELLDSPGILPMRISDQGAAMKLAICDDIGERSYDVADVAAILVQMLTKLPTV 21
           W+RFGKDLELLDSPGILPMRISDQ AA+KLAICDDIGERSYDVADVAAILVQML+KLPTV
Sbjct: 247 WVRFGKDLELLDSPGILPMRISDQSAAIKLAICDDIGERSYDVADVAAILVQMLSKLPTV 306

Query: 20  GSKAL 6
           G  AL
Sbjct: 307 GRDAL 311


>ref|XP_002307583.1| predicted protein [Populus trichocarpa] gi|222857032|gb|EEE94579.1|
           predicted protein [Populus trichocarpa]
          Length = 387

 Score =  397 bits (1019), Expect = e-108
 Identities = 198/265 (74%), Positives = 221/265 (83%), Gaps = 3/265 (1%)
 Frame = -3

Query: 791 ILGGK-TPAL--SSKQTTFYQEEENDWLDLDAEFYRWTKSLRPVQWYPGHIAKTXXXXXX 621
           I+GGK TP+   S         EE DW D + + Y WTK LRPVQWYPGHIAKT      
Sbjct: 48  IVGGKSTPSWQGSGNDVCGGGGEETDWYDFETDLYHWTKPLRPVQWYPGHIAKTEKELKE 107

Query: 620 XXXLMDVVIDVRDARIPLATSHPEMDSWIGNKKRMLVLNREDMISTAERNAWATYFSKQG 441
              LMDVVI+VRDARIPL+T+HP+MD+W+GN+KR+LVLNREDMIS A+RNAWATYF++QG
Sbjct: 108 QLKLMDVVIEVRDARIPLSTTHPQMDAWLGNRKRILVLNREDMISKADRNAWATYFARQG 167

Query: 440 TKVVFSNGQLGMGALKLGRLAKSLAVGINAKRRAKGLLPRAVRAGIVGYPNVGKSSLINR 261
            KVV SNGQLGMG +KL R AKSLA  +N KRR KGLLPR VRAGIVGYPNVGKSSLINR
Sbjct: 168 IKVVLSNGQLGMGTMKLSRFAKSLAASVNVKRREKGLLPRPVRAGIVGYPNVGKSSLINR 227

Query: 260 LLKRRMCPAAPRPGVTRVLKWIRFGKDLELLDSPGILPMRISDQGAAMKLAICDDIGERS 81
           LLKRRMCPAAPRPGVTR L+W+RFG DLELLDSPGI+PMRISDQ AA+KLAICDDIGERS
Sbjct: 228 LLKRRMCPAAPRPGVTRELRWVRFGNDLELLDSPGIIPMRISDQSAAIKLAICDDIGERS 287

Query: 80  YDVADVAAILVQMLTKLPTVGSKAL 6
           YDV DVAAILVQ+LTKLPTVG+KAL
Sbjct: 288 YDVTDVAAILVQILTKLPTVGAKAL 312


>gb|ABK94828.1| unknown [Populus trichocarpa]
          Length = 367

 Score =  397 bits (1019), Expect = e-108
 Identities = 198/265 (74%), Positives = 221/265 (83%), Gaps = 3/265 (1%)
 Frame = -3

Query: 791 ILGGK-TPAL--SSKQTTFYQEEENDWLDLDAEFYRWTKSLRPVQWYPGHIAKTXXXXXX 621
           I+GGK TP+   S         EE DW D + + Y WTK LRPVQWYPGHIAKT      
Sbjct: 48  IVGGKSTPSWQGSGNDVCGGGGEETDWYDFETDLYHWTKPLRPVQWYPGHIAKTEKELKE 107

Query: 620 XXXLMDVVIDVRDARIPLATSHPEMDSWIGNKKRMLVLNREDMISTAERNAWATYFSKQG 441
              LMDVVI+VRDARIPL+T+HP+MD+W+GN+KR+LVLNREDMIS A+RNAWATYF++QG
Sbjct: 108 QLKLMDVVIEVRDARIPLSTTHPQMDAWLGNRKRILVLNREDMISKADRNAWATYFARQG 167

Query: 440 TKVVFSNGQLGMGALKLGRLAKSLAVGINAKRRAKGLLPRAVRAGIVGYPNVGKSSLINR 261
            KVV SNGQLGMG +KL R AKSLA  +N KRR KGLLPR VRAGIVGYPNVGKSSLINR
Sbjct: 168 IKVVLSNGQLGMGTMKLSRFAKSLAASVNVKRREKGLLPRPVRAGIVGYPNVGKSSLINR 227

Query: 260 LLKRRMCPAAPRPGVTRVLKWIRFGKDLELLDSPGILPMRISDQGAAMKLAICDDIGERS 81
           LLKRRMCPAAPRPGVTR L+W+RFG DLELLDSPGI+PMRISDQ AA+KLAICDDIGERS
Sbjct: 228 LLKRRMCPAAPRPGVTRELRWVRFGNDLELLDSPGIIPMRISDQSAAIKLAICDDIGERS 287

Query: 80  YDVADVAAILVQMLTKLPTVGSKAL 6
           YDV DVAAILVQ+LTKLPTVG+KAL
Sbjct: 288 YDVTDVAAILVQILTKLPTVGAKAL 312


>ref|XP_004150129.1| PREDICTED: ribosome biogenesis GTPase A-like [Cucumis sativus]
           gi|449507918|ref|XP_004163166.1| PREDICTED: ribosome
           biogenesis GTPase A-like [Cucumis sativus]
          Length = 370

 Score =  395 bits (1014), Expect = e-108
 Identities = 194/261 (74%), Positives = 222/261 (85%)
 Frame = -3

Query: 788 LGGKTPALSSKQTTFYQEEENDWLDLDAEFYRWTKSLRPVQWYPGHIAKTXXXXXXXXXL 609
           LG  TP  +S         E DW+D +A+ Y WT +LRPVQWYPGHIAKT         L
Sbjct: 58  LGDSTPKGASNNELL----EGDWVDFEADLYYWTNALRPVQWYPGHIAKTEKELKDQLKL 113

Query: 608 MDVVIDVRDARIPLATSHPEMDSWIGNKKRMLVLNREDMISTAERNAWATYFSKQGTKVV 429
           MDVVI+VRDARIP++TSHP+MD+W+GN++R+LVLNREDMIS+A+RNAWATYF++QG KVV
Sbjct: 114 MDVVIEVRDARIPMSTSHPQMDAWLGNRRRILVLNREDMISSADRNAWATYFTRQGIKVV 173

Query: 428 FSNGQLGMGALKLGRLAKSLAVGINAKRRAKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 249
           FSNGQ GMG +KLGRLAK+LA  +N KRRAKGLLPRAVRAGIVGYPNVGKSSLINRLLKR
Sbjct: 174 FSNGQHGMGTMKLGRLAKTLAADVNVKRRAKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 233

Query: 248 RMCPAAPRPGVTRVLKWIRFGKDLELLDSPGILPMRISDQGAAMKLAICDDIGERSYDVA 69
           RMCPAAPRPGVTR LKW+RFG DLELLDSPGI+PMRISDQ AA+KLAICDDIGERSY+ A
Sbjct: 234 RMCPAAPRPGVTRELKWVRFGNDLELLDSPGIIPMRISDQTAAIKLAICDDIGERSYNAA 293

Query: 68  DVAAILVQMLTKLPTVGSKAL 6
           DVAAILVQ+LTKLP+VG + L
Sbjct: 294 DVAAILVQILTKLPSVGIETL 314