BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00005556
         (832 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABR18062.1| unknown [Picea sitchensis]                             296   4e-78
ref|XP_002512441.1| arginine/serine-rich splicing factor, putati...   289   6e-76
ref|XP_002318990.1| predicted protein [Populus trichocarpa] gi|2...   289   6e-76
emb|CBI36847.3| unnamed protein product [Vitis vinifera]              287   2e-75
ref|XP_002265998.1| PREDICTED: pre-mRNA-splicing factor SF2-like...   287   2e-75

>gb|ABR18062.1| unknown [Picea sitchensis]
          Length = 331

 Score =  296 bits (758), Expect = 4e-78
 Identities = 146/189 (77%), Positives = 157/189 (83%)
 Frame = +3

Query: 72  SKASRTLYVGNLPGDIREREVDDLFYKYGPIVDIDLKVPPRPPGYAFVEFEDCNDAEDAI 251
           S+ASRTLYVGNLPGDIREREV+DLFYKYGPIVDIDLK+PPRPPGY F+EFED  DAEDAI
Sbjct: 3   SRASRTLYVGNLPGDIREREVEDLFYKYGPIVDIDLKIPPRPPGYCFIEFEDARDAEDAI 62

Query: 252 RGRDGYNFDGHRLRVELAHGGRPQPSPAEXXXXXXXXXXXXXXXXXXXXXXEYRVSVTGL 431
           RGRDGYNFDG+RLRVELAHGGR Q S  +                      EYRV V+GL
Sbjct: 63  RGRDGYNFDGNRLRVELAHGGRGQSSTND---RYSSYSSAGGRSGGVSRRSEYRVLVSGL 119

Query: 432 PSSASWQDLKDHMRRAGDVCFSQVFHGSSGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFT 611
           PSSASWQDLKDHMRRAGDVCFSQVF  SSGTTGIVDYTNYDDMKYAI+KLDDSEFRNAF+
Sbjct: 120 PSSASWQDLKDHMRRAGDVCFSQVFRDSSGTTGIVDYTNYDDMKYAIRKLDDSEFRNAFS 179

Query: 612 RGYIRVREH 638
           RGYIRV+E+
Sbjct: 180 RGYIRVKEY 188


>ref|XP_002512441.1| arginine/serine-rich splicing factor, putative [Ricinus communis]
           gi|223548402|gb|EEF49893.1| arginine/serine-rich
           splicing factor, putative [Ricinus communis]
          Length = 300

 Score =  289 bits (739), Expect = 6e-76
 Identities = 148/220 (67%), Positives = 163/220 (74%), Gaps = 11/220 (5%)
 Frame = +3

Query: 15  ISRRQLVFSSRLINMSYK-----------GSKASRTLYVGNLPGDIREREVDDLFYKYGP 161
           + +R  V+SSR I    K            S+ASRTLYVGNLPGDIR+REV DLFYKYGP
Sbjct: 10  VIKRPPVYSSRRIQTFLKQKQCLLLGKRMSSRASRTLYVGNLPGDIRQREVKDLFYKYGP 69

Query: 162 IVDIDLKVPPRPPGYAFVEFEDCNDAEDAIRGRDGYNFDGHRLRVELAHGGRPQPSPAEX 341
           IV++DLK+PPRPPGYAFVEFED  DAEDAIRGRDGYNFDG RLRVELAHGGR   SP + 
Sbjct: 70  IVEVDLKIPPRPPGYAFVEFEDARDAEDAIRGRDGYNFDGCRLRVELAHGGRRHSSPGD- 128

Query: 342 XXXXXXXXXXXXXXXXXXXXXEYRVSVTGLPSSASWQDLKDHMRRAGDVCFSQVFHGSSG 521
                                +YRV VTGLPSSASWQDLKDHMRRAGDVCFSQVF    G
Sbjct: 129 ---RYSSYSGRSGSRGPSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG 185

Query: 522 TTGIVDYTNYDDMKYAIKKLDDSEFRNAFTRGYIRVREHN 641
            TGIVDYTNYDDMK+AIKKLDDSEFRNAF+R Y+RVRE++
Sbjct: 186 MTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRSYVRVREYD 225


>ref|XP_002318990.1| predicted protein [Populus trichocarpa] gi|222857366|gb|EEE94913.1|
           predicted protein [Populus trichocarpa]
          Length = 224

 Score =  289 bits (739), Expect = 6e-76
 Identities = 144/190 (75%), Positives = 153/190 (80%)
 Frame = +3

Query: 72  SKASRTLYVGNLPGDIREREVDDLFYKYGPIVDIDLKVPPRPPGYAFVEFEDCNDAEDAI 251
           S+ASRTLYVGNLPGDIR REV+DLFYKYGPIVDIDLK+PPRPPGYAFVEFE+  DAEDAI
Sbjct: 2   SRASRTLYVGNLPGDIRLREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEEARDAEDAI 61

Query: 252 RGRDGYNFDGHRLRVELAHGGRPQPSPAEXXXXXXXXXXXXXXXXXXXXXXEYRVSVTGL 431
           RGRDGYNFDG RLRVELAHGGR   SP +                      +YRV VTGL
Sbjct: 62  RGRDGYNFDGCRLRVELAHGGRRHSSPVD----HYSSYSGSSGSRGPSKRSDYRVLVTGL 117

Query: 432 PSSASWQDLKDHMRRAGDVCFSQVFHGSSGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFT 611
           PSSASWQDLKDHMRRAGDVCFSQVF    G TGIVDYTNYDDMKYAIKKLDDSEFRNAF+
Sbjct: 118 PSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTNYDDMKYAIKKLDDSEFRNAFS 177

Query: 612 RGYIRVREHN 641
           R YIRVRE++
Sbjct: 178 RAYIRVREYD 187


>emb|CBI36847.3| unnamed protein product [Vitis vinifera]
          Length = 264

 Score =  287 bits (734), Expect = 2e-75
 Identities = 140/190 (73%), Positives = 153/190 (80%)
 Frame = +3

Query: 72  SKASRTLYVGNLPGDIREREVDDLFYKYGPIVDIDLKVPPRPPGYAFVEFEDCNDAEDAI 251
           S+ASRTLYVGNLPGDIREREV+DLFYKYGPI  IDLK+PPRPPGYAFVEFE+  DAEDAI
Sbjct: 3   SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEESRDAEDAI 62

Query: 252 RGRDGYNFDGHRLRVELAHGGRPQPSPAEXXXXXXXXXXXXXXXXXXXXXXEYRVSVTGL 431
           RGRDGY+FDGHRLRVELAHGGR   S  +                      EYRV VTGL
Sbjct: 63  RGRDGYDFDGHRLRVELAHGGRGHSSSID----RHSHSSGRGGRGGASRRSEYRVLVTGL 118

Query: 432 PSSASWQDLKDHMRRAGDVCFSQVFHGSSGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFT 611
           PSSASWQDLKDHMRRAGDVCFSQVFH   GT GIVDYTNYDDMK+AI+KLDDSEFRNAF+
Sbjct: 119 PSSASWQDLKDHMRRAGDVCFSQVFHDGGGTVGIVDYTNYDDMKFAIRKLDDSEFRNAFS 178

Query: 612 RGYIRVREHN 641
           R Y+RV+E++
Sbjct: 179 RAYVRVKEYD 188


>ref|XP_002265998.1| PREDICTED: pre-mRNA-splicing factor SF2-like isoform 1 [Vitis
           vinifera] gi|359480272|ref|XP_003632425.1| PREDICTED:
           pre-mRNA-splicing factor SF2-like isoform 2 [Vitis
           vinifera]
          Length = 296

 Score =  287 bits (734), Expect = 2e-75
 Identities = 140/190 (73%), Positives = 153/190 (80%)
 Frame = +3

Query: 72  SKASRTLYVGNLPGDIREREVDDLFYKYGPIVDIDLKVPPRPPGYAFVEFEDCNDAEDAI 251
           S+ASRTLYVGNLPGDIREREV+DLFYKYGPI  IDLK+PPRPPGYAFVEFE+  DAEDAI
Sbjct: 3   SRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEESRDAEDAI 62

Query: 252 RGRDGYNFDGHRLRVELAHGGRPQPSPAEXXXXXXXXXXXXXXXXXXXXXXEYRVSVTGL 431
           RGRDGY+FDGHRLRVELAHGGR   S  +                      EYRV VTGL
Sbjct: 63  RGRDGYDFDGHRLRVELAHGGRGHSSSID----RHSHSSGRGGRGGASRRSEYRVLVTGL 118

Query: 432 PSSASWQDLKDHMRRAGDVCFSQVFHGSSGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFT 611
           PSSASWQDLKDHMRRAGDVCFSQVFH   GT GIVDYTNYDDMK+AI+KLDDSEFRNAF+
Sbjct: 119 PSSASWQDLKDHMRRAGDVCFSQVFHDGGGTVGIVDYTNYDDMKFAIRKLDDSEFRNAFS 178

Query: 612 RGYIRVREHN 641
           R Y+RV+E++
Sbjct: 179 RAYVRVKEYD 188