BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00005479
         (310 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002324390.1| predicted protein [Populus trichocarpa] gi|2...   114   6e-24
ref|XP_004146126.1| PREDICTED: uncharacterized protein LOC101212...   113   1e-23
ref|XP_003588460.1| 50S ribosomal protein L28 [Medicago truncatu...   110   9e-23
ref|NP_194874.1| Ribosomal L28 family [Arabidopsis thaliana] gi|...   109   2e-22
gb|AFK38646.1| unknown [Lotus japonicus]                              108   3e-22

>ref|XP_002324390.1| predicted protein [Populus trichocarpa] gi|222865824|gb|EEF02955.1|
           predicted protein [Populus trichocarpa]
          Length = 177

 Score =  114 bits (286), Expect = 6e-24
 Identities = 55/81 (67%), Positives = 68/81 (83%)
 Frame = +2

Query: 68  MSFKWNAAVFRKMAKKVGEENFAPGVKESVKKFIPENHKIVMGRAKRGLYAGRHIQYGNQ 247
           M+F+    + + M+K  GE+N APGVKE++KK IP N K+VM RAKRGL+AGRHIQ+GNQ
Sbjct: 1   MAFRGKEMMKKIMSKIGGEKNLAPGVKEALKKAIP-NSKVVMNRAKRGLFAGRHIQFGNQ 59

Query: 248 ISEDGGNKSRRTWKPNIQDKR 310
           ISEDGGNKSRR+WKPN+QDKR
Sbjct: 60  ISEDGGNKSRRSWKPNVQDKR 80


>ref|XP_004146126.1| PREDICTED: uncharacterized protein LOC101212331 [Cucumis sativus]
           gi|449528875|ref|XP_004171427.1| PREDICTED:
           uncharacterized LOC101212331 [Cucumis sativus]
          Length = 221

 Score =  113 bits (283), Expect = 1e-23
 Identities = 51/73 (69%), Positives = 65/73 (89%)
 Frame = +2

Query: 92  VFRKMAKKVGEENFAPGVKESVKKFIPENHKIVMGRAKRGLYAGRHIQYGNQISEDGGNK 271
           + +K+ KKVGE N APGVK+S+KK IP++ KIVMGRA RG+YAGRHI++GN++SEDGGNK
Sbjct: 8   MMKKILKKVGENNLAPGVKDSLKKCIPDS-KIVMGRANRGIYAGRHIRFGNRVSEDGGNK 66

Query: 272 SRRTWKPNIQDKR 310
           SRR WKPN+Q+KR
Sbjct: 67  SRRNWKPNVQEKR 79


>ref|XP_003588460.1| 50S ribosomal protein L28 [Medicago truncatula]
           gi|355477508|gb|AES58711.1| 50S ribosomal protein L28
           [Medicago truncatula]
          Length = 232

 Score =  110 bits (276), Expect = 9e-23
 Identities = 47/73 (64%), Positives = 65/73 (89%)
 Frame = +2

Query: 92  VFRKMAKKVGEENFAPGVKESVKKFIPENHKIVMGRAKRGLYAGRHIQYGNQISEDGGNK 271
           + +K+ KKVG++N  P  KES++K++P+N K+VMGRAKRGL+AG+HIQ+GN +SEDGGN+
Sbjct: 8   MMKKVLKKVGDKNLTPRAKESIEKWLPKN-KVVMGRAKRGLFAGKHIQFGNSVSEDGGNR 66

Query: 272 SRRTWKPNIQDKR 310
           +RRTWKPN+QDKR
Sbjct: 67  TRRTWKPNVQDKR 79


>ref|NP_194874.1| Ribosomal L28 family [Arabidopsis thaliana]
           gi|15724234|gb|AAL06510.1|AF412057_1 AT4g31460/F3L17_30
           [Arabidopsis thaliana] gi|5262757|emb|CAB45905.1|
           putative protein [Arabidopsis thaliana]
           gi|7270049|emb|CAB79864.1| putative protein [Arabidopsis
           thaliana] gi|21593391|gb|AAM65340.1| unknown
           [Arabidopsis thaliana] gi|30102482|gb|AAP21159.1|
           At4g31460/F3L17_30 [Arabidopsis thaliana]
           gi|332660516|gb|AEE85916.1| Ribosomal L28 family
           [Arabidopsis thaliana]
          Length = 212

 Score =  109 bits (273), Expect = 2e-22
 Identities = 49/73 (67%), Positives = 61/73 (83%)
 Frame = +2

Query: 92  VFRKMAKKVGEENFAPGVKESVKKFIPENHKIVMGRAKRGLYAGRHIQYGNQISEDGGNK 271
           + +K+ KKVG EN  P +KE +K  +P+  K+VMGRAKRGLYAGRHIQYGN++SEDGGNK
Sbjct: 8   MMKKLVKKVGAENITPELKEKLKACVPDT-KVVMGRAKRGLYAGRHIQYGNRVSEDGGNK 66

Query: 272 SRRTWKPNIQDKR 310
           SRR WKPN+Q+KR
Sbjct: 67  SRRCWKPNVQEKR 79


>gb|AFK38646.1| unknown [Lotus japonicus]
          Length = 235

 Score =  108 bits (271), Expect = 3e-22
 Identities = 50/73 (68%), Positives = 62/73 (84%)
 Frame = +2

Query: 92  VFRKMAKKVGEENFAPGVKESVKKFIPENHKIVMGRAKRGLYAGRHIQYGNQISEDGGNK 271
           + +K+ KKVGE+N  P  KES++K IP+  KIVMGRAKRGL+AGRHIQ+GN +SEDGGNK
Sbjct: 8   MMKKVLKKVGEKNLTPKAKESLQKCIPKT-KIVMGRAKRGLFAGRHIQFGNTVSEDGGNK 66

Query: 272 SRRTWKPNIQDKR 310
           +RR WKPN+QDKR
Sbjct: 67  TRRNWKPNVQDKR 79