BLASTX nr result
ID: Coptis23_contig00005367
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00005367
(2059 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002268899.2| PREDICTED: DNA repair protein REV1-like [Vit... 549 e-153
emb|CBI22513.3| unnamed protein product [Vitis vinifera] 532 e-148
ref|XP_002518660.1| terminal deoxycytidyl transferase rev1, puta... 480 e-133
ref|XP_004137093.1| PREDICTED: DNA repair protein REV1-like [Cuc... 452 e-124
ref|XP_002313880.1| predicted protein [Populus trichocarpa] gi|2... 437 e-120
>ref|XP_002268899.2| PREDICTED: DNA repair protein REV1-like [Vitis vinifera]
Length = 1175
Score = 549 bits (1414), Expect = e-153
Identities = 305/619 (49%), Positives = 388/619 (62%), Gaps = 35/619 (5%)
Frame = +3
Query: 3 LPGIGRVLEEKLKRLHIQTCGLLRTFSKESLQKDFGSKTGTMLWNYSRGIDNQPVGVVQE 182
LPGIG VLEEKL+R + TCG LR SKESLQ+DFG+KTG MLWNY RG+DN+ VGV+QE
Sbjct: 574 LPGIGHVLEEKLRRRKVHTCGQLRMISKESLQRDFGTKTGDMLWNYCRGVDNRVVGVIQE 633
Query: 183 TKSVGAEVNWGVRFNSWQDSQRFLVNLCNEVSLRLQGCGVQGXXXXXXXXXXXXDAEEPA 362
+KS+GAEVNWGVRFN +DS+ FLVNLC EV+LRL+GCGVQG DA EPA
Sbjct: 634 SKSIGAEVNWGVRFNDLKDSRHFLVNLCKEVTLRLKGCGVQGRTFTLKMKKRRKDAGEPA 693
Query: 363 KYMGCGDCENLSHSVTIPVATDDVDVLQRISKQLFGYFQLDVKDIRGVGLQVSRLENADL 542
KYMGCGDCENLSHS+T+P+ATDDVDV+QRI+ QLFG+F +DVKDIRG+GLQVSRLENAD
Sbjct: 694 KYMGCGDCENLSHSMTVPLATDDVDVIQRIATQLFGFFHIDVKDIRGIGLQVSRLENADT 753
Query: 543 ASQGHEXXXXXXXXXXXXXNMEEPISSS----KER--IDGEIPLLEGQHGTVSMKLAKPH 704
A QGH+ EE +S KER DGE K
Sbjct: 754 AKQGHQRISIRSWLTSAPATNEELCKTSCLVRKERAVADGE----------------KQS 797
Query: 705 YDGDSSKFVKNSTGPSYQVQTDQSRGEASLSRTSTLPHICDLDMGVIKTLPPEIFSEVNE 884
D + +S PS Q+ S EA L++ S LP +CDLDMGV+++LPPE+ SE+N+
Sbjct: 798 TDISLGQLSNDSKRPSLQMSPSSSNNEAPLNQVSELPALCDLDMGVLESLPPELLSEIND 857
Query: 885 MYGGKLSDLLEKNEDKDNKISDSVCNLFRRDLEGERNKGKEPLSCHQVHFEKSGSKNEVH 1064
MY GKLSD + K + K+ +S ++C EG N GK+ L C V K+ +N+V
Sbjct: 858 MYAGKLSDFIRKRKGKNENVSGTMCTTSYEIYEGAINNGKQ-LHCSIVPIRKTPVENKVE 916
Query: 1065 -----------------------QRRPQEYHSASTSVAGSFN-SHTSMGEDQNDFMPTSL 1172
Q + E S S A S N + +++D MP+SL
Sbjct: 917 KTLDREIATENSLLQSSEVEKVKQYKIDEIQEVSVSGAVSLNVVDPASALEKSDLMPSSL 976
Query: 1173 SQVDISVLQQLPEELKVDILQLLPGHRRPECSDNCLVECLHDKVKRENINDHLE----EA 1340
SQVDISVLQQLP+E+ VDIL+ LP HR+PE S + ++ L + H E
Sbjct: 977 SQVDISVLQQLPKEMWVDILEQLPVHRKPEHSSSAALDPLIANAQESLCFKHTENNSKSV 1036
Query: 1341 NSVSRNHLWIGCPPLWVDKFEVSNHLILNLLAEMYYRXXXXXXXXXXXQSAISAPTF-WE 1517
+SV N+LWIG PP WVDKF+VSN L+LN+LAEMYYR Q +S +
Sbjct: 1037 DSVLGNNLWIGNPPQWVDKFKVSNCLLLNILAEMYYRSGSTGCLSSILQCTLSKFLLPLD 1096
Query: 1518 ASNDPEDDVISSVCSLLQQYIELKIKSDMEEIYICFRLLRRLSIKSRFFLQVYEEVLPYA 1697
AS+D D+ ISS+C LL+QYI++KI+SD+EEIY+CFRLL+R ++KS+ FL+ Y V PY
Sbjct: 1097 ASSDGWDETISSLCDLLKQYIKIKIESDIEEIYVCFRLLKRFTMKSKLFLEAYNVVFPYL 1156
Query: 1698 QVSFAENYGGNLNV*HAKD 1754
Q S ENYGG+L + HAK+
Sbjct: 1157 QASAGENYGGSLQLSHAKE 1175
>emb|CBI22513.3| unnamed protein product [Vitis vinifera]
Length = 1123
Score = 532 bits (1370), Expect = e-148
Identities = 297/600 (49%), Positives = 383/600 (63%), Gaps = 16/600 (2%)
Frame = +3
Query: 3 LPGIGRVLEEKLKRLHIQTCGLLRTFSKESLQKDFGSKTGTMLWNYSRGIDNQPVGVVQE 182
LPGIG VLEEKL+R + TCG LR SKESLQ+DFG+KTG MLWNY RG+DN+ VGV+QE
Sbjct: 552 LPGIGHVLEEKLRRRKVHTCGQLRMISKESLQRDFGTKTGDMLWNYCRGVDNRVVGVIQE 611
Query: 183 TKSVGAEVNWGVRFNSWQDSQRFLVNLCNEVSLRLQGCGVQGXXXXXXXXXXXXDAEEPA 362
+KS+GAEVNWGVRFN +DS+ FLVNLC EV+LRL+GCGVQG DA EPA
Sbjct: 612 SKSIGAEVNWGVRFNDLKDSRHFLVNLCKEVTLRLKGCGVQGRTFTLKMKKRRKDAGEPA 671
Query: 363 KYMGCGDCENLSHSVTIPVATDDVDVLQRISKQLFGYFQLDVKDIRGVGLQVSRLENADL 542
KYMGCGDCENLSHS+T+P+ATDDVDV+QRI+ QLFG+F +DVKDIRG+GLQVSRLENAD
Sbjct: 672 KYMGCGDCENLSHSMTVPLATDDVDVIQRIATQLFGFFHIDVKDIRGIGLQVSRLENADT 731
Query: 543 ASQGHEXXXXXXXXXXXXXNMEEPISSS----KER--IDGEIPLLEGQHGTVSMKLAKPH 704
A QGH+ EE +S KER DGE K
Sbjct: 732 AKQGHQRISIRSWLTSAPATNEELCKTSCLVRKERAVADGE----------------KQS 775
Query: 705 YDGDSSKFVKNSTGPSYQVQTDQSRGEASLSRTSTLPHICDLDMGVIKTLPPEIFSEVNE 884
D + +S PS Q+ S EA L++ S LP +CDLDMGV+++LPPE+ SE+N+
Sbjct: 776 TDISLGQLSNDSKRPSLQMSPSSSNNEAPLNQVSELPALCDLDMGVLESLPPELLSEIND 835
Query: 885 MYGGKLSDLLEKNEDKDNKISDSVCNLFRRD----LEGERNKGKEPLSCHQVHFEKSGSK 1052
MY GKLSD + K + K+ + + + F+ L+ E+ +E ++ + S +
Sbjct: 836 MYAGKLSDFIRKRKGKNENLLHASHSSFKHTIVLILKVEKTLDRE-IATENSLLQSSEVE 894
Query: 1053 NEVHQRRPQEYHSASTSVAGSFN-SHTSMGEDQNDFMPTSLSQVDISVLQQLPEELKVDI 1229
EV S S A S N + +++D MP+SLSQVDISVLQQLP+E+ VDI
Sbjct: 895 KEV-----------SVSGAVSLNVVDPASALEKSDLMPSSLSQVDISVLQQLPKEMWVDI 943
Query: 1230 LQLLPGHRRPECSDNCLVECLHDKVKRENINDHLE----EANSVSRNHLWIGCPPLWVDK 1397
L+ LP HR+PE S + ++ L + H E +SV N+LWIG PP WVDK
Sbjct: 944 LEQLPVHRKPEHSSSAALDPLIANAQESLCFKHTENNSKSVDSVLGNNLWIGNPPQWVDK 1003
Query: 1398 FEVSNHLILNLLAEMYYRXXXXXXXXXXXQSAISAPTF-WEASNDPEDDVISSVCSLLQQ 1574
F+VSN L+LN+LAEMYYR Q +S +AS+D D+ ISS+C LL+Q
Sbjct: 1004 FKVSNCLLLNILAEMYYRSGSTGCLSSILQCTLSKFLLPLDASSDGWDETISSLCDLLKQ 1063
Query: 1575 YIELKIKSDMEEIYICFRLLRRLSIKSRFFLQVYEEVLPYAQVSFAENYGGNLNV*HAKD 1754
YI++KI+SD+EEIY+CFRLL+R ++KS+ FL+ Y V PY Q S ENYGG+L + HAK+
Sbjct: 1064 YIKIKIESDIEEIYVCFRLLKRFTMKSKLFLEAYNVVFPYLQASAGENYGGSLQLSHAKE 1123
>ref|XP_002518660.1| terminal deoxycytidyl transferase rev1, putative [Ricinus communis]
gi|223542041|gb|EEF43585.1| terminal deoxycytidyl
transferase rev1, putative [Ricinus communis]
Length = 1200
Score = 480 bits (1236), Expect = e-133
Identities = 286/598 (47%), Positives = 360/598 (60%), Gaps = 20/598 (3%)
Frame = +3
Query: 3 LPGIGRVLEEKLKRLHIQTCGLLRTFSKESLQKDFGSKTGTMLWNYSRGIDNQPVGVVQE 182
LPGIG VLEEKLK+ +++TCG LR SK+SL KDFG KTG MLWNYSRGIDN+ VGV+QE
Sbjct: 543 LPGIGHVLEEKLKKKNVRTCGQLRLISKDSLHKDFGKKTGEMLWNYSRGIDNRLVGVIQE 602
Query: 183 TKSVGAEVNWGVRFNSWQDSQRFLVNLCNEVSLRLQGCGVQGXXXXXXXXXXXXDAEEPA 362
+KS+GAEVNWGVRF + QDSQ FL+NLC EVSLRLQGCGV G DA EP
Sbjct: 603 SKSIGAEVNWGVRFRNLQDSQHFLLNLCKEVSLRLQGCGVHGRTFTLKIKKRRKDAGEPT 662
Query: 363 KYMGCGDCENLSHSVTIPVATDDVDVLQRISKQLFGYFQLDVKDIRGVGLQVSRLENADL 542
KYMGCGDCENLSHS+T+PVATDDVDVLQRI+KQLFG F LDVK+IRGVGLQVS+LENAD+
Sbjct: 663 KYMGCGDCENLSHSMTVPVATDDVDVLQRIAKQLFGSFNLDVKEIRGVGLQVSKLENADI 722
Query: 543 ASQGHEXXXXXXXXXXXXXNMEEPISSSKERIDGEIPLLEGQHGTVSMKLAKPHYDGDSS 722
S+G E +S + + + E +H S+ + DS
Sbjct: 723 -SRGLER------------------NSLRSWLTSASTMTEERHSINSISTRR----ADSG 759
Query: 723 KFVKNSTGPSYQVQTDQSRGEASLSRTSTLPHICDLDMGVIKTLPPEIFSEVNEMYGGKL 902
+ TG S ++ + S GEAS + P + DLDMGVI++LPPE+ SE+N++YGGKL
Sbjct: 760 NLFPHQTGGSAEMNNNFSNGEASFNHVPAPPRLFDLDMGVIESLPPELVSELNDIYGGKL 819
Query: 903 SDLLEKNEDKDNKISDS--------------VCNLFRR--DLEGERNKGKEPLSCHQVHF 1034
D + +N+ K S + ++F+R L R SC
Sbjct: 820 VDFIAQNKGKSENGRGSSSIPSHGQEEEDYLIVSIFKRYSSLLLARITINFCTSCQ---- 875
Query: 1035 EKSGSKNEVHQRRPQEYHSASTSVAGSFNSHTSMGEDQNDFMPTSLSQVDISVLQQLPEE 1214
E+ + E+ P S++ ++HT +G D MP+SLSQVD SVLQQLP+E
Sbjct: 876 EQQHTAEEILLAAPSSGFSSNDG-----STHT-LGLGNTDLMPSSLSQVDTSVLQQLPDE 929
Query: 1215 LKVDILQLLPGHRRPECSDNC-LVECLHDKVKRENINDHLE-EANSVSRNHLWIGCPPLW 1388
LK DIL LLP HRR E + N +V + + I ++ SV N LWIG PP W
Sbjct: 930 LKADILGLLPAHRRLELTSNSSMVPLTKNPQELLGITENQTMPVASVLNNDLWIGNPPRW 989
Query: 1389 VDKFEVSNHLILNLLAEMYYRXXXXXXXXXXXQSAISAPTFWEASNDP--EDDVISSVCS 1562
VDKF+VSN LILN LAEMY + QS IS ND +D+ C
Sbjct: 990 VDKFKVSNCLILNSLAEMYDKLGSADNLSSVLQSTISESINHPIENDDSWDDEAAYCFCE 1049
Query: 1563 LLQQYIELKIKSDMEEIYICFRLLRRLSIKSRFFLQVYEEVLPYAQVSFAENYGGNLN 1736
LL+QYI LKI+ D+EEIY+CFRLLRR + S+FFLQVY V+PY Q+ F + +N
Sbjct: 1050 LLKQYINLKIEFDIEEIYVCFRLLRRFTKISKFFLQVYNIVIPYLQLIFFLKFQTGMN 1107
>ref|XP_004137093.1| PREDICTED: DNA repair protein REV1-like [Cucumis sativus]
Length = 1155
Score = 452 bits (1162), Expect = e-124
Identities = 258/584 (44%), Positives = 350/584 (59%), Gaps = 5/584 (0%)
Frame = +3
Query: 3 LPGIGRVLEEKLKRLHIQTCGLLRTFSKESLQKDFGSKTGTMLWNYSRGIDNQPVGVVQE 182
LPGIG LEEKLK+ + TC LR SK+SLQKDFG KTG MLWNYSRG+DN+ VG++QE
Sbjct: 609 LPGIGHALEEKLKKRSVLTCSQLRMLSKDSLQKDFGLKTGEMLWNYSRGVDNRAVGLIQE 668
Query: 183 TKSVGAEVNWGVRFNSWQDSQRFLVNLCNEVSLRLQGCGVQGXXXXXXXXXXXXDAEEPA 362
+KS+GAEVNWGVRF ++D Q FL+NLC EVSLRL GCGVQG +A+EP
Sbjct: 669 SKSIGAEVNWGVRFKDFKDCQCFLLNLCKEVSLRLNGCGVQGRTFTLKIKKRRKNADEPT 728
Query: 363 KYMGCGDCENLSHSVTIPVATDDVDVLQRISKQLFGYFQLDVKDIRGVGLQVSRLENADL 542
KYMGCGDCENLSHS+T+PVATDD+++LQRI KQLFG+F +DVK+IRG+GLQVS+L+N D+
Sbjct: 729 KYMGCGDCENLSHSLTVPVATDDLEILQRIVKQLFGFFVIDVKEIRGIGLQVSKLQNVDI 788
Query: 543 ASQG-HEXXXXXXXXXXXXXNMEEPISSSKERIDGEIPLLEGQHGTVSMKLAKPHYDGDS 719
+ QG N+E I S + + + GT+ A P
Sbjct: 789 SRQGTKRNSLDSWLSSSATTNVENVIGPSVKEVANIDNEKQSNSGTLDQLSADP------ 842
Query: 720 SKFVKNSTGPSYQVQTDQSRGEASLSRTSTLPHICDLDMGVIKTLPPEIFSEVNEMYGGK 899
S+ +Q + +R + + P +C+LD+GVI++LPPE+FSE+NE+YGGK
Sbjct: 843 ---------ISHLIQMENNRHHSEALNPVSPPPLCNLDIGVIRSLPPELFSELNEIYGGK 893
Query: 900 LSDLLEKNEDKDNKISDSVCNLFRRDLEGERNKGKEPLSCHQVHFEKSGSKNEVHQRRPQ 1079
L DLL K+ DK+ S S+ R +G G + L+ + K S+N++ + +
Sbjct: 894 LIDLLSKSRDKNEVFSSSI----RVPSQG---SGGDGLTLSDIQGNKVQSENKISR---E 943
Query: 1080 EYHSASTSVAGSFNSHTSMGEDQNDFMPTSLSQVDISVLQQLPEELKVDILQLLPGHRRP 1259
++ ++ S G + D +P+SLSQVD SVLQ+LPE L+ DIL+ LP HR
Sbjct: 944 GLYTMMAPISTS-------GSHRIDLLPSSLSQVDPSVLQELPEPLRDDILKQLPAHRGN 996
Query: 1260 ECSDNCLVECLHD-KVKRENINDHLEEANSVSRNHLWIGCPPLWVDKFEVSNHLILNLLA 1436
E S L + D + + + + + N LW G PPLWVDKF+ SN LIL L A
Sbjct: 997 ELS---LEHAIKDQRESGSGVENTSGSVDPLMENDLWSGNPPLWVDKFKASNCLILELFA 1053
Query: 1437 EMYYRXXXXXXXXXXXQSAISAPTFWE---ASNDPEDDVISSVCSLLQQYIELKIKSDME 1607
E+Y S W A +D D I +C LL+QY +LKI+ D+E
Sbjct: 1054 EIYTESGLPGNLYEILLRTSSQS--WHPSAADSDGWDGAIYGLCELLKQYFKLKIELDIE 1111
Query: 1608 EIYICFRLLRRLSIKSRFFLQVYEEVLPYAQVSFAENYGGNLNV 1739
E Y+CFRLL+RL++KS+ FL+V+ + PY Q + E YGG+L V
Sbjct: 1112 ETYVCFRLLKRLAMKSQLFLEVFNIIDPYLQGAVNEIYGGSLKV 1155
>ref|XP_002313880.1| predicted protein [Populus trichocarpa] gi|222850288|gb|EEE87835.1|
predicted protein [Populus trichocarpa]
Length = 1191
Score = 437 bits (1123), Expect = e-120
Identities = 258/568 (45%), Positives = 329/568 (57%), Gaps = 11/568 (1%)
Frame = +3
Query: 3 LPGIGRVLEEKLKRLHIQTCGLLRTFSKESLQKDFGSKTGTMLWNYSRGIDNQPVGVVQE 182
LPGIG VLEEKLK+ ++ TCG LR SKESLQKDFG KTG MLWNYSRG+DN+ VG +QE
Sbjct: 618 LPGIGHVLEEKLKKQNVWTCGQLRLISKESLQKDFGLKTGEMLWNYSRGVDNRLVGNIQE 677
Query: 183 TKSVGAEVNWGVRFNSWQDSQRFLVNLCNEVSLRLQGCGVQGXXXXXXXXXXXXDAEEPA 362
+K++GAEVNWGVRF QDSQ FL+NLC EVS RLQGC VQG DA EPA
Sbjct: 678 SKTIGAEVNWGVRFKDLQDSQCFLLNLCKEVSFRLQGCRVQGRTFTLKIKKRRKDAGEPA 737
Query: 363 KYMGCGDCENLSHSVTIPVATDDVDVLQRISKQLFGYFQLDVKDIRGVGLQVSRLENADL 542
KYMGCGDCENLSHS+T+P+A DDV+ LQRI+KQLFG F LDVKDIRGVGLQVS+LENAD
Sbjct: 738 KYMGCGDCENLSHSMTVPIAIDDVEALQRITKQLFGSFCLDVKDIRGVGLQVSKLENADP 797
Query: 543 ASQGHEXXXXXXXXXXXXXNMEEPIS-----SSKERIDGEIPLLEGQHGTVSMKLAKPHY 707
+ Q E E+ S + RID E+ +
Sbjct: 798 SKQVLERNSLRSWLTSSSATTEKGCSINSMDKERARIDSEV----------------KNM 841
Query: 708 DGDSSKFVKNSTGPSYQVQTDQSRGEASLSRTSTLPHICDLDMGVIKTLPPEIFSEVNEM 887
G S + + TG S QV T+ S G S P + LDMGV+K+LP E+FSE+NE+
Sbjct: 842 IGTSGQLFPDQTGFSAQVDTNSSSG------ISAPPPLSHLDMGVVKSLPAELFSELNEI 895
Query: 888 YGGKLSDLLEKNEDKDNKISDSVCNLFRRDLEGERNKGKEPLSCHQVHFEKSGSKNEVHQ 1067
YGGKL+D + K+ I+ E + G+ PL+ + + + +N Q
Sbjct: 896 YGGKLTDFIAKSSVASENINSYPSTPSAEGQELAVDGGEGPLASNMIPLDFVMVENRAKQ 955
Query: 1068 RRPQEYHSASTSVAGSFNSHTSMGEDQNDFMPTSLSQVDISVLQQLPEELKVDILQLLPG 1247
+E +A + + +S+ + D MP SLSQVD+SVLQQLPEEL+ DIL LP
Sbjct: 956 HMIEEAQAAPSGAGLQNEAISSVSPNNTDLMPLSLSQVDVSVLQQLPEELRGDILGQLPA 1015
Query: 1248 HRRPECSDNCLVECLHDKVKRENINDHLEEAN----SVSRNHLWIGCPPLWVDKFEVSNH 1415
HR+ E + N L + + I + E + SV +LWIG PP WVDKF VS+
Sbjct: 1016 HRKQELTSNAGSHPLSENPEGTLIINITENQSNSIASVLNTNLWIGSPPQWVDKFTVSSC 1075
Query: 1416 LILNLLAEMYYRXXXXXXXXXXXQSAISAPTFWEASNDPE--DDVISSVCSLLQQYIELK 1589
LIL LAE+YY+ Q IS + N ++ +C L +QY++LK
Sbjct: 1076 LILKTLAELYYKLGSTGSLSPILQRIISECLYPLDENGDACGEEATYDLCELFKQYVKLK 1135
Query: 1590 IKSDMEEIYICFRLLRRLSIKSRFFLQV 1673
+ D+EEIY+CF LLRR S + L V
Sbjct: 1136 TELDLEEIYVCFCLLRRYVHVSDWSLSV 1163