BLASTX nr result
ID: Coptis23_contig00005339
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00005339
(1076 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002270233.1| PREDICTED: 31 kDa ribonucleoprotein, chlorop... 178 2e-72
emb|CBI34828.3| unnamed protein product [Vitis vinifera] 178 2e-72
emb|CAD18921.1| RNA-binding protein precursor [Persea americana] 179 2e-70
emb|CAN61133.1| hypothetical protein VITISV_039575 [Vitis vinifera] 169 1e-68
ref|XP_002278832.1| PREDICTED: 31 kDa ribonucleoprotein, chlorop... 169 1e-68
>ref|XP_002270233.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Vitis
vinifera]
Length = 312
Score = 178 bits (451), Expect(3) = 2e-72
Identities = 83/101 (82%), Positives = 97/101 (96%)
Frame = -3
Query: 828 AEKAIDMFNRYDINGRNLTVNKAAPKGSRPERTPRSFEPSFRIYVGNLPWQVDDARLEQV 649
AEKA++MFNRYD+NGR LTVNKAAP+GSRPER P++FEPSFRIYVGNLPWQVDDARLEQV
Sbjct: 187 AEKAVEMFNRYDLNGRFLTVNKAAPRGSRPERPPQAFEPSFRIYVGNLPWQVDDARLEQV 246
Query: 648 FSEYGKVADARVVYDRESGRSRGFGFITMSTQTEVDDAIAA 526
FSE+GKV DARVVYDR++ RSRGFGF+TMS++TE++DAIAA
Sbjct: 247 FSEHGKVVDARVVYDRDTQRSRGFGFVTMSSETELNDAIAA 287
Score = 96.7 bits (239), Expect(3) = 2e-72
Identities = 44/61 (72%), Positives = 52/61 (85%)
Frame = -1
Query: 1076 ESGGDYYPEPTEDAKLFVGNLPYDLDSERLAMLFEKAGIVHSAEVIYNRDTDQSRGFGFV 897
E D Y EP E+AKLFVGNLPYD+DSE+LA LF++AG+V AEVIYNR+TDQSRGFGF+
Sbjct: 120 EGSEDTYSEPPEEAKLFVGNLPYDIDSEKLAQLFDEAGVVEIAEVIYNRETDQSRGFGFI 179
Query: 896 T 894
T
Sbjct: 180 T 180
Score = 46.6 bits (109), Expect(3) = 2e-72
Identities = 21/24 (87%), Positives = 23/24 (95%)
Frame = -2
Query: 442 DGQSLDGRAIKVNVAEERPRRNSF 371
DGQSLDGRAI+VNVAEERPRR S+
Sbjct: 289 DGQSLDGRAIRVNVAEERPRRGSY 312
Score = 67.8 bits (164), Expect = 4e-09
Identities = 30/58 (51%), Positives = 43/58 (74%)
Frame = -3
Query: 705 RIYVGNLPWQVDDARLEQVFSEYGKVADARVVYDRESGRSRGFGFITMSTQTEVDDAI 532
+++VGNLP+ +D +L Q+F E G V A V+Y+RE+ +SRGFGFITMST E + A+
Sbjct: 134 KLFVGNLPYDIDSEKLAQLFDEAGVVEIAEVIYNRETDQSRGFGFITMSTVEEAEKAV 191
Score = 57.8 bits (138), Expect = 5e-06
Identities = 25/47 (53%), Positives = 35/47 (74%)
Frame = -1
Query: 1034 KLFVGNLPYDLDSERLAMLFEKAGIVHSAEVIYNRDTDQSRGFGFVT 894
+++VGNLP+ +D RL +F + G V A V+Y+RDT +SRGFGFVT
Sbjct: 228 RIYVGNLPWQVDDARLEQVFSEHGKVVDARVVYDRDTQRSRGFGFVT 274
>emb|CBI34828.3| unnamed protein product [Vitis vinifera]
Length = 272
Score = 178 bits (451), Expect(3) = 2e-72
Identities = 83/101 (82%), Positives = 97/101 (96%)
Frame = -3
Query: 828 AEKAIDMFNRYDINGRNLTVNKAAPKGSRPERTPRSFEPSFRIYVGNLPWQVDDARLEQV 649
AEKA++MFNRYD+NGR LTVNKAAP+GSRPER P++FEPSFRIYVGNLPWQVDDARLEQV
Sbjct: 147 AEKAVEMFNRYDLNGRFLTVNKAAPRGSRPERPPQAFEPSFRIYVGNLPWQVDDARLEQV 206
Query: 648 FSEYGKVADARVVYDRESGRSRGFGFITMSTQTEVDDAIAA 526
FSE+GKV DARVVYDR++ RSRGFGF+TMS++TE++DAIAA
Sbjct: 207 FSEHGKVVDARVVYDRDTQRSRGFGFVTMSSETELNDAIAA 247
Score = 96.7 bits (239), Expect(3) = 2e-72
Identities = 44/61 (72%), Positives = 52/61 (85%)
Frame = -1
Query: 1076 ESGGDYYPEPTEDAKLFVGNLPYDLDSERLAMLFEKAGIVHSAEVIYNRDTDQSRGFGFV 897
E D Y EP E+AKLFVGNLPYD+DSE+LA LF++AG+V AEVIYNR+TDQSRGFGF+
Sbjct: 80 EGSEDTYSEPPEEAKLFVGNLPYDIDSEKLAQLFDEAGVVEIAEVIYNRETDQSRGFGFI 139
Query: 896 T 894
T
Sbjct: 140 T 140
Score = 46.6 bits (109), Expect(3) = 2e-72
Identities = 21/24 (87%), Positives = 23/24 (95%)
Frame = -2
Query: 442 DGQSLDGRAIKVNVAEERPRRNSF 371
DGQSLDGRAI+VNVAEERPRR S+
Sbjct: 249 DGQSLDGRAIRVNVAEERPRRGSY 272
Score = 67.8 bits (164), Expect = 4e-09
Identities = 30/58 (51%), Positives = 43/58 (74%)
Frame = -3
Query: 705 RIYVGNLPWQVDDARLEQVFSEYGKVADARVVYDRESGRSRGFGFITMSTQTEVDDAI 532
+++VGNLP+ +D +L Q+F E G V A V+Y+RE+ +SRGFGFITMST E + A+
Sbjct: 94 KLFVGNLPYDIDSEKLAQLFDEAGVVEIAEVIYNRETDQSRGFGFITMSTVEEAEKAV 151
Score = 57.8 bits (138), Expect = 5e-06
Identities = 25/47 (53%), Positives = 35/47 (74%)
Frame = -1
Query: 1034 KLFVGNLPYDLDSERLAMLFEKAGIVHSAEVIYNRDTDQSRGFGFVT 894
+++VGNLP+ +D RL +F + G V A V+Y+RDT +SRGFGFVT
Sbjct: 188 RIYVGNLPWQVDDARLEQVFSEHGKVVDARVVYDRDTQRSRGFGFVT 234
>emb|CAD18921.1| RNA-binding protein precursor [Persea americana]
Length = 300
Score = 179 bits (455), Expect(3) = 2e-70
Identities = 84/101 (83%), Positives = 97/101 (96%)
Frame = -3
Query: 828 AEKAIDMFNRYDINGRNLTVNKAAPKGSRPERTPRSFEPSFRIYVGNLPWQVDDARLEQV 649
AEKA++MFNRYDINGR LTVNKAAP+G+R +R PR+FEP+FR+YVGNLPWQVDDARLEQV
Sbjct: 175 AEKAVEMFNRYDINGRLLTVNKAAPRGARVDRPPRAFEPAFRMYVGNLPWQVDDARLEQV 234
Query: 648 FSEYGKVADARVVYDRESGRSRGFGFITMSTQTEVDDAIAA 526
FSE+GKV +ARVVYDRE+GRSRGFGF+TMSTQTE+DDAIAA
Sbjct: 235 FSEHGKVVEARVVYDRETGRSRGFGFVTMSTQTELDDAIAA 275
Score = 89.4 bits (220), Expect(3) = 2e-70
Identities = 46/70 (65%), Positives = 52/70 (74%), Gaps = 9/70 (12%)
Frame = -1
Query: 1076 ESGGD---------YYPEPTEDAKLFVGNLPYDLDSERLAMLFEKAGIVHSAEVIYNRDT 924
ESGGD YP P E+AKLFVGNLPYD+D + LA LF++AG V AEVIYNR+T
Sbjct: 99 ESGGDGFVEGGEEDSYPLPPEEAKLFVGNLPYDVDHQALAELFDQAGTVEVAEVIYNRET 158
Query: 923 DQSRGFGFVT 894
DQSRGFGFVT
Sbjct: 159 DQSRGFGFVT 168
Score = 45.8 bits (107), Expect(3) = 2e-70
Identities = 21/24 (87%), Positives = 23/24 (95%)
Frame = -2
Query: 442 DGQSLDGRAIKVNVAEERPRRNSF 371
DGQSLDGRAI+VNVAE+RPRR SF
Sbjct: 277 DGQSLDGRAIRVNVAEDRPRRASF 300
Score = 64.3 bits (155), Expect = 5e-08
Identities = 28/58 (48%), Positives = 42/58 (72%)
Frame = -3
Query: 705 RIYVGNLPWQVDDARLEQVFSEYGKVADARVVYDRESGRSRGFGFITMSTQTEVDDAI 532
+++VGNLP+ VD L ++F + G V A V+Y+RE+ +SRGFGF+TMST E + A+
Sbjct: 122 KLFVGNLPYDVDHQALAELFDQAGTVEVAEVIYNRETDQSRGFGFVTMSTVEEAEKAV 179
>emb|CAN61133.1| hypothetical protein VITISV_039575 [Vitis vinifera]
Length = 1122
Score = 169 bits (428), Expect(3) = 1e-68
Identities = 78/101 (77%), Positives = 95/101 (94%)
Frame = -3
Query: 828 AEKAIDMFNRYDINGRNLTVNKAAPKGSRPERTPRSFEPSFRIYVGNLPWQVDDARLEQV 649
AEKA+DMF+RY+++GR LTVNKAAP+GS+PER PR FEP+FR+YVGNLPW VD ARLEQV
Sbjct: 997 AEKAVDMFHRYELDGRLLTVNKAAPRGSQPERPPRVFEPAFRMYVGNLPWDVDSARLEQV 1056
Query: 648 FSEYGKVADARVVYDRESGRSRGFGFITMSTQTEVDDAIAA 526
FSE+GKV +ARVV+DRE+GRSRGFGF+TMS+QTE++DAIAA
Sbjct: 1057 FSEHGKVVEARVVFDRETGRSRGFGFVTMSSQTELEDAIAA 1097
Score = 95.5 bits (236), Expect(3) = 1e-68
Identities = 44/61 (72%), Positives = 53/61 (86%)
Frame = -1
Query: 1076 ESGGDYYPEPTEDAKLFVGNLPYDLDSERLAMLFEKAGIVHSAEVIYNRDTDQSRGFGFV 897
+ G D Y EP E+AK+FVGNLPYD+DSERLA LFE+AG+V AEVIYNR+TD+SRGFGFV
Sbjct: 930 DDGEDSYSEPPEEAKVFVGNLPYDVDSERLARLFEQAGVVEIAEVIYNRETDRSRGFGFV 989
Query: 896 T 894
+
Sbjct: 990 S 990
Score = 44.3 bits (103), Expect(3) = 1e-68
Identities = 19/24 (79%), Positives = 23/24 (95%)
Frame = -2
Query: 442 DGQSLDGRAIKVNVAEERPRRNSF 371
DGQ+LDGR I+VNVAEERPRR++F
Sbjct: 1099 DGQTLDGRTIRVNVAEERPRRSAF 1122
Score = 66.6 bits (161), Expect = 1e-08
Identities = 29/58 (50%), Positives = 43/58 (74%)
Frame = -3
Query: 705 RIYVGNLPWQVDDARLEQVFSEYGKVADARVVYDRESGRSRGFGFITMSTQTEVDDAI 532
+++VGNLP+ VD RL ++F + G V A V+Y+RE+ RSRGFGF++MST E + A+
Sbjct: 944 KVFVGNLPYDVDSERLARLFEQAGVVEIAEVIYNRETDRSRGFGFVSMSTVEEAEKAV 1001
Score = 58.2 bits (139), Expect = 4e-06
Identities = 25/47 (53%), Positives = 37/47 (78%)
Frame = -1
Query: 1034 KLFVGNLPYDLDSERLAMLFEKAGIVHSAEVIYNRDTDQSRGFGFVT 894
+++VGNLP+D+DS RL +F + G V A V+++R+T +SRGFGFVT
Sbjct: 1038 RMYVGNLPWDVDSARLEQVFSEHGKVVEARVVFDRETGRSRGFGFVT 1084
>ref|XP_002278832.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic [Vitis vinifera]
Length = 327
Score = 169 bits (428), Expect(3) = 1e-68
Identities = 78/101 (77%), Positives = 95/101 (94%)
Frame = -3
Query: 828 AEKAIDMFNRYDINGRNLTVNKAAPKGSRPERTPRSFEPSFRIYVGNLPWQVDDARLEQV 649
AEKA+DMF+RY+++GR LTVNKAAP+GS+PER PR FEP+FR+YVGNLPW VD ARLEQV
Sbjct: 202 AEKAVDMFHRYELDGRLLTVNKAAPRGSQPERPPRVFEPAFRMYVGNLPWDVDSARLEQV 261
Query: 648 FSEYGKVADARVVYDRESGRSRGFGFITMSTQTEVDDAIAA 526
FSE+GKV +ARVV+DRE+GRSRGFGF+TMS+QTE++DAIAA
Sbjct: 262 FSEHGKVVEARVVFDRETGRSRGFGFVTMSSQTELEDAIAA 302
Score = 95.5 bits (236), Expect(3) = 1e-68
Identities = 44/61 (72%), Positives = 53/61 (86%)
Frame = -1
Query: 1076 ESGGDYYPEPTEDAKLFVGNLPYDLDSERLAMLFEKAGIVHSAEVIYNRDTDQSRGFGFV 897
+ G D Y EP E+AK+FVGNLPYD+DSERLA LFE+AG+V AEVIYNR+TD+SRGFGFV
Sbjct: 135 DDGEDSYSEPPEEAKVFVGNLPYDVDSERLARLFEQAGVVEIAEVIYNRETDRSRGFGFV 194
Query: 896 T 894
+
Sbjct: 195 S 195
Score = 44.3 bits (103), Expect(3) = 1e-68
Identities = 19/24 (79%), Positives = 23/24 (95%)
Frame = -2
Query: 442 DGQSLDGRAIKVNVAEERPRRNSF 371
DGQ+LDGR I+VNVAEERPRR++F
Sbjct: 304 DGQTLDGRTIRVNVAEERPRRSAF 327
Score = 66.6 bits (161), Expect = 1e-08
Identities = 29/58 (50%), Positives = 43/58 (74%)
Frame = -3
Query: 705 RIYVGNLPWQVDDARLEQVFSEYGKVADARVVYDRESGRSRGFGFITMSTQTEVDDAI 532
+++VGNLP+ VD RL ++F + G V A V+Y+RE+ RSRGFGF++MST E + A+
Sbjct: 149 KVFVGNLPYDVDSERLARLFEQAGVVEIAEVIYNRETDRSRGFGFVSMSTVEEAEKAV 206
Score = 58.2 bits (139), Expect = 4e-06
Identities = 25/47 (53%), Positives = 37/47 (78%)
Frame = -1
Query: 1034 KLFVGNLPYDLDSERLAMLFEKAGIVHSAEVIYNRDTDQSRGFGFVT 894
+++VGNLP+D+DS RL +F + G V A V+++R+T +SRGFGFVT
Sbjct: 243 RMYVGNLPWDVDSARLEQVFSEHGKVVEARVVFDRETGRSRGFGFVT 289