BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00005323
         (1758 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002279533.1| PREDICTED: DNA polymerase delta small subuni...   723   0.0  
emb|CAN71889.1| hypothetical protein VITISV_040861 [Vitis vinifera]   723   0.0  
ref|NP_973664.1| DNA polymerase delta subunit 2 [Arabidopsis tha...   694   0.0  
ref|NP_181742.2| DNA polymerase delta subunit 2 [Arabidopsis tha...   690   0.0  
ref|XP_002881822.1| hypothetical protein ARALYDRAFT_483299 [Arab...   687   0.0  

>ref|XP_002279533.1| PREDICTED: DNA polymerase delta small subunit [Vitis vinifera]
            gi|297739835|emb|CBI30017.3| unnamed protein product
            [Vitis vinifera]
          Length = 439

 Score =  723 bits (1865), Expect = 0.0
 Identities = 343/428 (80%), Positives = 389/428 (90%)
 Frame = -3

Query: 1573 LQRKQSLYRSLDEIFEIQKDKYTGQQYSQIYFARLHVIRNLLYSLANTWKPHLPICTVLG 1394
            LQRKQSLY SLDE F I+K+ Y GQQYSQIYFARLH++R L+YSL   WKPHLP+CTVLG
Sbjct: 9    LQRKQSLYESLDEKFRIEKETYRGQQYSQIYFARLHMMRTLIYSLIPNWKPHLPVCTVLG 68

Query: 1393 LEKGKECIVVGTLYKHMKLKPCILDDYSKERSVFPIVKPHNFMHADDQLILEDESGRVKL 1214
            LE+GKECI+VGTLYKHMKLKPCILD+YSKERSV P+VKPHNFMH+DD L+LEDESGRVKL
Sbjct: 69   LEEGKECIIVGTLYKHMKLKPCILDEYSKERSVAPLVKPHNFMHSDDSLVLEDESGRVKL 128

Query: 1213 GGTMLSPSFFVTGVVVALHGSETSAGEFVVQDVLEAGLPPQIELPLDLGEDKYVVFVSGL 1034
            GGTML PS +VTG VV LHG ETSAGEF+VQD+L+A LPPQIELPL   EDKYVVFVSGL
Sbjct: 129  GGTMLLPSVYVTGTVVGLHGKETSAGEFLVQDILDADLPPQIELPLKSREDKYVVFVSGL 188

Query: 1033 SVGNDMSNPLEFQLLVDHITGHLGDDKEQLIASQIVRVVIAGNSVEVQHGLLNGKTLAAK 854
            SVG+  SNPL+FQLLVDHITGHLGD+KEQ IA+QIV VVIAGNSV V  GLLNG+ LA+K
Sbjct: 189  SVGSSTSNPLQFQLLVDHITGHLGDEKEQGIAAQIVHVVIAGNSVAVPRGLLNGQNLASK 248

Query: 853  EQSRLSEPVKELDILLTQLAVAVPLDIMPGFNDPANFALPQQPLHRCLFRGASAYNTFQS 674
            +QSRLSEP+KELDILLTQ+A  +PLDIMPG +DPANF+LPQQPLHRCLF G+SAYN+F+S
Sbjct: 249  DQSRLSEPIKELDILLTQIAAGLPLDIMPGPDDPANFSLPQQPLHRCLFPGSSAYNSFRS 308

Query: 673  CTNPHLFEIDNIRFLGTSGQNIDDLDKYAEAKDRLDFMERTLTWRHIAPTTPNTLGCYPF 494
            CTNPH FE++NIRFLGTSGQN+DDL+KY+EAKD+L+FMERTL WRH+APT PNTLGCYPF
Sbjct: 309  CTNPHSFELENIRFLGTSGQNVDDLEKYSEAKDKLEFMERTLRWRHLAPTAPNTLGCYPF 368

Query: 493  TDRDPFLIESCPNVYFVGNQNKYETRLAKGSEGQLVRLICIPKFSESGVAVMLNLRNLEC 314
            TDRDPFLIESCP+VYFVGNQ+KYETRL KGSEGQ+VRLICIPKF E+GVAV+LN+RNLEC
Sbjct: 369  TDRDPFLIESCPHVYFVGNQDKYETRLIKGSEGQVVRLICIPKFCETGVAVVLNMRNLEC 428

Query: 313  HTLSFSTQ 290
            H LSF T+
Sbjct: 429  HALSFGTE 436


>emb|CAN71889.1| hypothetical protein VITISV_040861 [Vitis vinifera]
          Length = 439

 Score =  723 bits (1865), Expect = 0.0
 Identities = 343/428 (80%), Positives = 389/428 (90%)
 Frame = -3

Query: 1573 LQRKQSLYRSLDEIFEIQKDKYTGQQYSQIYFARLHVIRNLLYSLANTWKPHLPICTVLG 1394
            LQRKQSLY SLDE F I+K+ Y GQQYSQIYFARLH++R L+YSL   WKPHLP+CTVLG
Sbjct: 9    LQRKQSLYESLDEKFRIEKETYRGQQYSQIYFARLHMMRTLIYSLIPNWKPHLPVCTVLG 68

Query: 1393 LEKGKECIVVGTLYKHMKLKPCILDDYSKERSVFPIVKPHNFMHADDQLILEDESGRVKL 1214
            LE+GKECI+VGTLYKHMKLKPCILD+YSKERSV P+VKPHNFMH+DD L+LEDESGRVKL
Sbjct: 69   LEEGKECIIVGTLYKHMKLKPCILDEYSKERSVAPLVKPHNFMHSDDSLVLEDESGRVKL 128

Query: 1213 GGTMLSPSFFVTGVVVALHGSETSAGEFVVQDVLEAGLPPQIELPLDLGEDKYVVFVSGL 1034
            GGTML PS +VTG VV LHG ETSAGEF+VQD+L+A LPPQIELPL   EDKYVVFVSGL
Sbjct: 129  GGTMLLPSVYVTGTVVGLHGKETSAGEFLVQDILDADLPPQIELPLKSREDKYVVFVSGL 188

Query: 1033 SVGNDMSNPLEFQLLVDHITGHLGDDKEQLIASQIVRVVIAGNSVEVQHGLLNGKTLAAK 854
            SVG+  SNPL+FQLLVDHITGHLGD+KEQ IA+QIV VVIAGNSV V  GLLNG+ LA+K
Sbjct: 189  SVGSSXSNPLQFQLLVDHITGHLGDEKEQGIAAQIVHVVIAGNSVAVPRGLLNGQNLASK 248

Query: 853  EQSRLSEPVKELDILLTQLAVAVPLDIMPGFNDPANFALPQQPLHRCLFRGASAYNTFQS 674
            +QSRLSEP+KELDILLTQ+A  +PLDIMPG +DPANF+LPQQPLHRCLF G+SAYN+F+S
Sbjct: 249  DQSRLSEPIKELDILLTQIAAGLPLDIMPGPDDPANFSLPQQPLHRCLFPGSSAYNSFRS 308

Query: 673  CTNPHLFEIDNIRFLGTSGQNIDDLDKYAEAKDRLDFMERTLTWRHIAPTTPNTLGCYPF 494
            CTNPH FE++NIRFLGTSGQN+DDL+KY+EAKD+L+FMERTL WRH+APT PNTLGCYPF
Sbjct: 309  CTNPHSFELENIRFLGTSGQNVDDLEKYSEAKDKLEFMERTLRWRHLAPTAPNTLGCYPF 368

Query: 493  TDRDPFLIESCPNVYFVGNQNKYETRLAKGSEGQLVRLICIPKFSESGVAVMLNLRNLEC 314
            TDRDPFLIESCP+VYFVGNQ+KYETRL KGSEGQ+VRLICIPKF E+GVAV+LN+RNLEC
Sbjct: 369  TDRDPFLIESCPHVYFVGNQDKYETRLIKGSEGQVVRLICIPKFCETGVAVVLNMRNLEC 428

Query: 313  HTLSFSTQ 290
            H LSF T+
Sbjct: 429  HALSFGTE 436


>ref|NP_973664.1| DNA polymerase delta subunit 2 [Arabidopsis thaliana]
            gi|322510023|sp|O48520.2|DPOD2_ARATH RecName: Full=DNA
            polymerase delta small subunit gi|22531160|gb|AAM97084.1|
            putative DNA polymerase delta small subunit [Arabidopsis
            thaliana] gi|31376377|gb|AAP49515.1| At2g42120
            [Arabidopsis thaliana] gi|62320658|dbj|BAD95325.1| DNA
            polymerase delta small subunit like protein [Arabidopsis
            thaliana] gi|330254978|gb|AEC10072.1| DNA polymerase
            delta subunit 2 [Arabidopsis thaliana]
          Length = 440

 Score =  694 bits (1792), Expect = 0.0
 Identities = 330/431 (76%), Positives = 382/431 (88%)
 Frame = -3

Query: 1579 EILQRKQSLYRSLDEIFEIQKDKYTGQQYSQIYFARLHVIRNLLYSLANTWKPHLPICTV 1400
            +I +RKQS Y SLDE FEIQK+ Y GQQYSQIYFARLH++R LLYSLA TWK HLP+C V
Sbjct: 7    KIHERKQSDYNSLDERFEIQKEMYRGQQYSQIYFARLHLMRTLLYSLAPTWKSHLPVCKV 66

Query: 1399 LGLEKGKECIVVGTLYKHMKLKPCILDDYSKERSVFPIVKPHNFMHADDQLILEDESGRV 1220
            LGLEKGKECI+VGTL+KHMKLKPC+LD+YSKERSV P+VKPHNFMH DD LILEDESGRV
Sbjct: 67   LGLEKGKECIIVGTLFKHMKLKPCVLDEYSKERSVTPLVKPHNFMHPDDNLILEDESGRV 126

Query: 1219 KLGGTMLSPSFFVTGVVVALHGSETSAGEFVVQDVLEAGLPPQIELPLDLGEDKYVVFVS 1040
            KL G+ LSP+ +VTGVVVALHG ET+AGEF V+DVLEAGLPPQIE P+DL EDKYVV +S
Sbjct: 127  KLAGSALSPAIYVTGVVVALHGKETNAGEFFVEDVLEAGLPPQIERPIDLQEDKYVVLLS 186

Query: 1039 GLSVGNDMSNPLEFQLLVDHITGHLGDDKEQLIASQIVRVVIAGNSVEVQHGLLNGKTLA 860
            GL +G+  +NPL+FQLLVDHITGHLGD++EQ +A+QIV VVIAGNS E    L+NG+ LA
Sbjct: 187  GLCIGSKSANPLQFQLLVDHITGHLGDEEEQGLAAQIVHVVIAGNSFEFPRKLINGQNLA 246

Query: 859  AKEQSRLSEPVKELDILLTQLAVAVPLDIMPGFNDPANFALPQQPLHRCLFRGASAYNTF 680
            +K+QS L EP+KELDI+L+Q+A  V +DIMPG NDPANFALPQQPL+RCLF G+S YNTF
Sbjct: 247  SKDQSTLYEPIKELDIMLSQIAAGVSVDIMPGTNDPANFALPQQPLNRCLFPGSSPYNTF 306

Query: 679  QSCTNPHLFEIDNIRFLGTSGQNIDDLDKYAEAKDRLDFMERTLTWRHIAPTTPNTLGCY 500
            +SCTNPH F++DNIRFLGTSGQNIDDL KY+EAK +LDF+ERTL WRH+APT PNTLGCY
Sbjct: 307  RSCTNPHSFDVDNIRFLGTSGQNIDDLGKYSEAKSKLDFVERTLRWRHLAPTAPNTLGCY 366

Query: 499  PFTDRDPFLIESCPNVYFVGNQNKYETRLAKGSEGQLVRLICIPKFSESGVAVMLNLRNL 320
            PFTDRDPFLIE+CP+VYFVGNQ+KY+ RL KGSEGQLVRLICIPKF E+G+AV +NLRNL
Sbjct: 367  PFTDRDPFLIETCPHVYFVGNQDKYDNRLIKGSEGQLVRLICIPKFCETGIAVAVNLRNL 426

Query: 319  ECHTLSFSTQM 287
            ECHTLSFSTQ+
Sbjct: 427  ECHTLSFSTQI 437


>ref|NP_181742.2| DNA polymerase delta subunit 2 [Arabidopsis thaliana]
            gi|330254979|gb|AEC10073.1| DNA polymerase delta subunit
            2 [Arabidopsis thaliana]
          Length = 441

 Score =  690 bits (1780), Expect = 0.0
 Identities = 330/432 (76%), Positives = 382/432 (88%), Gaps = 1/432 (0%)
 Frame = -3

Query: 1579 EILQRKQSLYRSL-DEIFEIQKDKYTGQQYSQIYFARLHVIRNLLYSLANTWKPHLPICT 1403
            +I +RKQS Y SL DE FEIQK+ Y GQQYSQIYFARLH++R LLYSLA TWK HLP+C 
Sbjct: 7    KIHERKQSDYNSLQDERFEIQKEMYRGQQYSQIYFARLHLMRTLLYSLAPTWKSHLPVCK 66

Query: 1402 VLGLEKGKECIVVGTLYKHMKLKPCILDDYSKERSVFPIVKPHNFMHADDQLILEDESGR 1223
            VLGLEKGKECI+VGTL+KHMKLKPC+LD+YSKERSV P+VKPHNFMH DD LILEDESGR
Sbjct: 67   VLGLEKGKECIIVGTLFKHMKLKPCVLDEYSKERSVTPLVKPHNFMHPDDNLILEDESGR 126

Query: 1222 VKLGGTMLSPSFFVTGVVVALHGSETSAGEFVVQDVLEAGLPPQIELPLDLGEDKYVVFV 1043
            VKL G+ LSP+ +VTGVVVALHG ET+AGEF V+DVLEAGLPPQIE P+DL EDKYVV +
Sbjct: 127  VKLAGSALSPAIYVTGVVVALHGKETNAGEFFVEDVLEAGLPPQIERPIDLQEDKYVVLL 186

Query: 1042 SGLSVGNDMSNPLEFQLLVDHITGHLGDDKEQLIASQIVRVVIAGNSVEVQHGLLNGKTL 863
            SGL +G+  +NPL+FQLLVDHITGHLGD++EQ +A+QIV VVIAGNS E    L+NG+ L
Sbjct: 187  SGLCIGSKSANPLQFQLLVDHITGHLGDEEEQGLAAQIVHVVIAGNSFEFPRKLINGQNL 246

Query: 862  AAKEQSRLSEPVKELDILLTQLAVAVPLDIMPGFNDPANFALPQQPLHRCLFRGASAYNT 683
            A+K+QS L EP+KELDI+L+Q+A  V +DIMPG NDPANFALPQQPL+RCLF G+S YNT
Sbjct: 247  ASKDQSTLYEPIKELDIMLSQIAAGVSVDIMPGTNDPANFALPQQPLNRCLFPGSSPYNT 306

Query: 682  FQSCTNPHLFEIDNIRFLGTSGQNIDDLDKYAEAKDRLDFMERTLTWRHIAPTTPNTLGC 503
            F+SCTNPH F++DNIRFLGTSGQNIDDL KY+EAK +LDF+ERTL WRH+APT PNTLGC
Sbjct: 307  FRSCTNPHSFDVDNIRFLGTSGQNIDDLGKYSEAKSKLDFVERTLRWRHLAPTAPNTLGC 366

Query: 502  YPFTDRDPFLIESCPNVYFVGNQNKYETRLAKGSEGQLVRLICIPKFSESGVAVMLNLRN 323
            YPFTDRDPFLIE+CP+VYFVGNQ+KY+ RL KGSEGQLVRLICIPKF E+G+AV +NLRN
Sbjct: 367  YPFTDRDPFLIETCPHVYFVGNQDKYDNRLIKGSEGQLVRLICIPKFCETGIAVAVNLRN 426

Query: 322  LECHTLSFSTQM 287
            LECHTLSFSTQ+
Sbjct: 427  LECHTLSFSTQI 438


>ref|XP_002881822.1| hypothetical protein ARALYDRAFT_483299 [Arabidopsis lyrata subsp.
            lyrata] gi|297327661|gb|EFH58081.1| hypothetical protein
            ARALYDRAFT_483299 [Arabidopsis lyrata subsp. lyrata]
          Length = 441

 Score =  687 bits (1772), Expect = 0.0
 Identities = 327/432 (75%), Positives = 380/432 (87%), Gaps = 1/432 (0%)
 Frame = -3

Query: 1579 EILQRKQSLYRSL-DEIFEIQKDKYTGQQYSQIYFARLHVIRNLLYSLANTWKPHLPICT 1403
            +I +RK S Y SL DE FEIQK+ Y GQQYSQIYF RLH++R LLYSLA TWKPHLP+C 
Sbjct: 7    KIHERKHSDYNSLQDERFEIQKEMYRGQQYSQIYFVRLHLMRTLLYSLAPTWKPHLPVCK 66

Query: 1402 VLGLEKGKECIVVGTLYKHMKLKPCILDDYSKERSVFPIVKPHNFMHADDQLILEDESGR 1223
            VLGLEKGKEC++VGTL+KHMKLKPC+LD+YSKERSV P+VKPHNFMH DD LILEDESGR
Sbjct: 67   VLGLEKGKECVIVGTLFKHMKLKPCVLDEYSKERSVTPLVKPHNFMHPDDNLILEDESGR 126

Query: 1222 VKLGGTMLSPSFFVTGVVVALHGSETSAGEFVVQDVLEAGLPPQIELPLDLGEDKYVVFV 1043
            VKL G+ LSP+ +VTGVVVALHG ET+AGEF V+DVLEAGLPPQIE P+DL +DKYVV +
Sbjct: 127  VKLAGSALSPAIYVTGVVVALHGKETNAGEFFVEDVLEAGLPPQIERPIDLQDDKYVVLL 186

Query: 1042 SGLSVGNDMSNPLEFQLLVDHITGHLGDDKEQLIASQIVRVVIAGNSVEVQHGLLNGKTL 863
            SGL +G+  + PL+FQLLVDHITGHLGD++EQ +A+QIV VVIAGNSVE    L+NG+ L
Sbjct: 187  SGLCIGSKSAIPLQFQLLVDHITGHLGDEEEQGLAAQIVHVVIAGNSVEFPRKLINGQNL 246

Query: 862  AAKEQSRLSEPVKELDILLTQLAVAVPLDIMPGFNDPANFALPQQPLHRCLFRGASAYNT 683
            A+K+QS L EP+KELDI+L Q+A  V +DIMPG NDPANFALPQQPL+RCLF G+S YNT
Sbjct: 247  ASKDQSTLYEPIKELDIMLNQIAAGVSVDIMPGTNDPANFALPQQPLNRCLFPGSSPYNT 306

Query: 682  FQSCTNPHLFEIDNIRFLGTSGQNIDDLDKYAEAKDRLDFMERTLTWRHIAPTTPNTLGC 503
            F+SCTNPH F++DNIRFLGTSGQNIDDLDKY+EAK +LDF+ERTL WRH+APT PNTLGC
Sbjct: 307  FRSCTNPHSFDLDNIRFLGTSGQNIDDLDKYSEAKSKLDFVERTLRWRHLAPTAPNTLGC 366

Query: 502  YPFTDRDPFLIESCPNVYFVGNQNKYETRLAKGSEGQLVRLICIPKFSESGVAVMLNLRN 323
            YPFTDRDPFLIE+CP+VYFVGNQ KY+ RL KGSEGQLVRLICIPKF E+G+AV +NLRN
Sbjct: 367  YPFTDRDPFLIETCPHVYFVGNQEKYDNRLLKGSEGQLVRLICIPKFCETGIAVAVNLRN 426

Query: 322  LECHTLSFSTQM 287
            L+CHTLSFSTQ+
Sbjct: 427  LDCHTLSFSTQI 438