BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00005278
         (1743 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN69960.1| hypothetical protein VITISV_032887 [Vitis vinifera]   580   e-163
ref|XP_003626687.1| Pentatricopeptide repeat-containing protein ...   541   e-151
ref|XP_002521681.1| pentatricopeptide repeat-containing protein,...   539   e-151
ref|XP_002306437.1| predicted protein [Populus trichocarpa] gi|2...   524   e-146
ref|XP_003595941.1| Pentatricopeptide repeat-containing protein ...   518   e-144

>emb|CAN69960.1| hypothetical protein VITISV_032887 [Vitis vinifera]
          Length = 472

 Score =  580 bits (1496), Expect = e-163
 Identities = 280/439 (63%), Positives = 351/439 (79%)
 Frame = -1

Query: 1737 QQPKSKNNKRPHNSKKPTRNKTLTPSPQPKPIFHTPSLSNAKKTFDQIISTSQIPLDLRH 1558
            Q+P     KRP  S K  + +T    P+   IF++P+L +AKK F  I +TS  PLDLR 
Sbjct: 37   QKPHHFPKKRPQPSGKTKKTRTPIEDPKSPVIFNSPNLLDAKKLFASITTTSTTPLDLRF 96

Query: 1557 YNSLLKSFSQISNIHDSFSFLQYMTKKNHPNFTPDHSTYNILLTQSCKIPPNHSQDHSDL 1378
            +N+LL+S+S IS ++DS SFL++M K + P+F+P+ STY+ILL+QSCK P      +SDL
Sbjct: 97   HNALLQSYSSISTVNDSISFLRHMIK-SQPSFSPERSTYHILLSQSCKSP------NSDL 149

Query: 1377 SVIRKTLDLMVENQVPPDHVAVDLAVRTLCSVSREEDAIEMIKEMGVKYSEPDMFTFNFM 1198
            S + +TL+LMV +  PPD V  D+AVR+LCS  REE AIE++KE+ +K+S PD FT+NF+
Sbjct: 150  SAVHQTLNLMVTHGFPPDRVTTDIAVRSLCSAGREEHAIELVKELSLKHSPPDSFTYNFI 209

Query: 1197 VRHLCKTRSLNYVYEFIDEMKEELSLQPDLVTYTILIENVCNSKNFREATRLLSVLADAG 1018
            +RHLCKTR+L+ VY FIDE++    L+PDLVTYTILI+NVCN KN REATRLL VL +AG
Sbjct: 210  IRHLCKTRALSTVYNFIDELQNSFQLKPDLVTYTILIDNVCNGKNLREATRLLEVLGEAG 269

Query: 1017 FKPDCFLYNTIMKGYCMLDRGSEVIGVYKQMKEEGVEPDLVTYNTMIYGLSKVGRVDEAR 838
            FKPDC++YNTIMKGYC+LD+GSE IGVYK+MKEEGVEPDLVTYNT+I+GLSK GRV EAR
Sbjct: 270  FKPDCYVYNTIMKGYCILDKGSEAIGVYKKMKEEGVEPDLVTYNTLIFGLSKSGRVKEAR 329

Query: 837  QFLVVMTEMGHFPDTVTYTSLMNGMCRKGDALGAMALLSRMEENGCSPNSCTYNTLLHGL 658
            +FL +M EMGHFPD VTYTSLMNG+CR+G+ALGA+ALL  ME  GCSPNSCTYNTLLHGL
Sbjct: 330  KFLDIMAEMGHFPDAVTYTSLMNGLCREGNALGALALLEEMEAKGCSPNSCTYNTLLHGL 389

Query: 657  CKSNLLEDGLQLYGVMKSAGMQLEASSYATFVRALCRDDRIAEAYQVFDYAVESKSLTDV 478
            CK  +LE G++LYGVMKS GM+LE +SYATFVRALC++ R+AEAY+ FDY VESKS  DV
Sbjct: 390  CKLRMLERGIELYGVMKSGGMKLEKASYATFVRALCKEGRVAEAYEAFDYVVESKSFDDV 449

Query: 477  AAYSALESTLKWAKKFKEQ 421
             AYS LE++LKW +K +EQ
Sbjct: 450  TAYSTLENSLKWLRKAREQ 468


>ref|XP_003626687.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
            gi|355520709|gb|AET01163.1| Pentatricopeptide
            repeat-containing protein [Medicago truncatula]
          Length = 501

 Score =  541 bits (1394), Expect = e-151
 Identities = 258/431 (59%), Positives = 343/431 (79%)
 Frame = -1

Query: 1713 KRPHNSKKPTRNKTLTPSPQPKPIFHTPSLSNAKKTFDQIISTSQIPLDLRHYNSLLKSF 1534
            ++PH  +K  ++++ + SP+P  +F +P+L  AK  F+  +++S  P+D R +NSLL+S+
Sbjct: 39   RKPH--QKQQQSQSQSQSPKPVSVFKSPNLQEAKSIFNSFVNSSNAPIDSRFHNSLLQSY 96

Query: 1533 SQISNIHDSFSFLQYMTKKNHPNFTPDHSTYNILLTQSCKIPPNHSQDHSDLSVIRKTLD 1354
            + IS I+DS +FL++MTK  HP+F+PD STY+ILLT  CK   +    +S LS+I +TL+
Sbjct: 97   ASISTINDSIAFLRHMTK-THPSFSPDKSTYHILLTHCCK---STDSKYSTLSLIHQTLN 152

Query: 1353 LMVENQVPPDHVAVDLAVRTLCSVSREEDAIEMIKEMGVKYSEPDMFTFNFMVRHLCKTR 1174
            LMV + + PD   VDLAVR+LC+  R +DA+E+IKE+  K+  PD++++NF+V++LCK+R
Sbjct: 153  LMVSDGISPDKGTVDLAVRSLCTADRVDDAVELIKELSSKHCSPDIYSYNFLVKNLCKSR 212

Query: 1173 SLNYVYEFIDEMKEELSLQPDLVTYTILIENVCNSKNFREATRLLSVLADAGFKPDCFLY 994
            +L+ VY FIDEM+ +  ++P+LVTYTILI+NVCN+KN REATRL+ +L + GFKPDCFLY
Sbjct: 213  TLSLVYAFIDEMRTKFDVKPNLVTYTILIDNVCNTKNLREATRLVDILEEEGFKPDCFLY 272

Query: 993  NTIMKGYCMLDRGSEVIGVYKQMKEEGVEPDLVTYNTMIYGLSKVGRVDEARQFLVVMTE 814
            NTIMKGYCML RGSE I VY +MKE+GVEPDL+TYNT+I+GLSK GRV EA++ L VM E
Sbjct: 273  NTIMKGYCMLSRGSEAIEVYNRMKEKGVEPDLITYNTLIFGLSKSGRVSEAKKLLRVMAE 332

Query: 813  MGHFPDTVTYTSLMNGMCRKGDALGAMALLSRMEENGCSPNSCTYNTLLHGLCKSNLLED 634
             GHFPD VTYTSLMNGMCRKG+ L A+ALL  ME  GCSPN+CTYNTLLHGLCKS + + 
Sbjct: 333  KGHFPDEVTYTSLMNGMCRKGETLAALALLEEMEMKGCSPNTCTYNTLLHGLCKSRMFDK 392

Query: 633  GLQLYGVMKSAGMQLEASSYATFVRALCRDDRIAEAYQVFDYAVESKSLTDVAAYSALES 454
             ++LYG MKS G++L+ +SYATFVRALC   R+A+AY+VFDYAVESKSL+DVAAYS LES
Sbjct: 393  AMELYGAMKSDGLKLDMASYATFVRALCSVGRVADAYEVFDYAVESKSLSDVAAYSTLES 452

Query: 453  TLKWAKKFKEQ 421
            TLKW KK KE+
Sbjct: 453  TLKWFKKAKEE 463



 Score = 69.3 bits (168), Expect = 3e-09
 Identities = 56/266 (21%), Positives = 106/266 (39%), Gaps = 2/266 (0%)
 Frame = -1

Query: 1206 NFMVRHLCKTRSLNYVYEFIDEM-KEELSLQPDLVTYTILIENVCNSKNFREATRLLSVL 1030
            N +++      ++N    F+  M K   S  PD  TY IL+ + C S + + +T  L   
Sbjct: 90   NSLLQSYASISTINDSIAFLRHMTKTHPSFSPDKSTYHILLTHCCKSTDSKYSTLSL--- 146

Query: 1029 ADAGFKPDCFLYNTIMKGYCMLDRGSEVIGVYKQMKEEGVEPDLVTYNTMIYGLSKVGRV 850
                      ++ T+                   M  +G+ PD  T +  +  L    RV
Sbjct: 147  ----------IHQTL-----------------NLMVSDGISPDKGTVDLAVRSLCTADRV 179

Query: 849  DEARQFLVVMTEMGHFPDTVTYTSLMNGMCRKGDALGAMALLSRMEEN-GCSPNSCTYNT 673
            D+A + +  ++     PD  +Y  L+  +C+        A +  M       PN  TY  
Sbjct: 180  DDAVELIKELSSKHCSPDIYSYNFLVKNLCKSRTLSLVYAFIDEMRTKFDVKPNLVTYTI 239

Query: 672  LLHGLCKSNLLEDGLQLYGVMKSAGMQLEASSYATFVRALCRDDRIAEAYQVFDYAVESK 493
            L+  +C +  L +  +L  +++  G + +   Y T ++  C   R +EA +V++   E  
Sbjct: 240  LIDNVCNTKNLREATRLVDILEEEGFKPDCFLYNTIMKGYCMLSRGSEAIEVYNRMKEKG 299

Query: 492  SLTDVAAYSALESTLKWAKKFKEQRQ 415
               D+  Y+ L   L  + +  E ++
Sbjct: 300  VEPDLITYNTLIFGLSKSGRVSEAKK 325


>ref|XP_002521681.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223539072|gb|EEF40668.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 458

 Score =  539 bits (1389), Expect = e-151
 Identities = 262/434 (60%), Positives = 337/434 (77%), Gaps = 3/434 (0%)
 Frame = -1

Query: 1713 KRPHNSKKPTRNKTLTPSPQP---KPIFHTPSLSNAKKTFDQIISTSQIPLDLRHYNSLL 1543
            ++PH   K T+ +     P P   K +F +P L+ AK+ F+ +IST+++PLDLR ++S L
Sbjct: 28   EKPHYLSKKTKLQLSQKIPTPIQQKRLFKSPELNEAKEIFNSLISTTRVPLDLRFHHSFL 87

Query: 1542 KSFSQISNIHDSFSFLQYMTKKNHPNFTPDHSTYNILLTQSCKIPPNHSQDHSDLSVIRK 1363
            +S+S IS I DS S L++M K   P+FTP  STY+ILL+QSCK P         LS + +
Sbjct: 88   QSYSSISTIDDSISLLRHMIK-TLPSFTPTISTYHILLSQSCKAPD------PTLSPVHQ 140

Query: 1362 TLDLMVENQVPPDHVAVDLAVRTLCSVSREEDAIEMIKEMGVKYSEPDMFTFNFMVRHLC 1183
             L+LMV N   P  V VD+AVR LCS  +E+DA++++KE+ +K+S+PD FT+NF+V+ LC
Sbjct: 141  ILNLMVNNGFMPTQVTVDIAVRALCSAGKEDDAVKLVKELSLKHSKPDSFTYNFLVKCLC 200

Query: 1182 KTRSLNYVYEFIDEMKEELSLQPDLVTYTILIENVCNSKNFREATRLLSVLADAGFKPDC 1003
            K R+L+ VY FIDEM+    L+P+LVTYTILI+NVCNSKN REA RLL +L + GFKPDC
Sbjct: 201  KCRALSNVYSFIDEMRSSFDLEPNLVTYTILIDNVCNSKNLREAMRLLGILRECGFKPDC 260

Query: 1002 FLYNTIMKGYCMLDRGSEVIGVYKQMKEEGVEPDLVTYNTMIYGLSKVGRVDEARQFLVV 823
            F+YNTIMKGYCML +GS+ I V+K+MKEEG+EPDL+TYNT+I+GLSK GRV EA+++L +
Sbjct: 261  FVYNTIMKGYCMLSKGSDAIQVFKKMKEEGIEPDLITYNTLIFGLSKGGRVSEAKRYLKI 320

Query: 822  MTEMGHFPDTVTYTSLMNGMCRKGDALGAMALLSRMEENGCSPNSCTYNTLLHGLCKSNL 643
            M E GHFPD VTYTSLMNG+CRKGDALGA+ALL  ME  GCSPNSCTYNTLL+GLCK  L
Sbjct: 321  MVESGHFPDAVTYTSLMNGLCRKGDALGALALLEDMEMKGCSPNSCTYNTLLYGLCKERL 380

Query: 642  LEDGLQLYGVMKSAGMQLEASSYATFVRALCRDDRIAEAYQVFDYAVESKSLTDVAAYSA 463
            LE G++LY V+K  GM L+ +SYATFVRALCR+ ++AEAY+VFDYAVESKSLT+ AAY+ 
Sbjct: 381  LEKGIELYNVIKEGGMLLDTASYATFVRALCREGKVAEAYEVFDYAVESKSLTNAAAYTT 440

Query: 462  LESTLKWAKKFKEQ 421
            LESTLKW KK +EQ
Sbjct: 441  LESTLKWLKKAREQ 454


>ref|XP_002306437.1| predicted protein [Populus trichocarpa] gi|222855886|gb|EEE93433.1|
            predicted protein [Populus trichocarpa]
          Length = 462

 Score =  524 bits (1349), Expect = e-146
 Identities = 263/449 (58%), Positives = 329/449 (73%), Gaps = 9/449 (2%)
 Frame = -1

Query: 1740 QQQPK-------SKNNKRPHNSKKPTRNKTLTPSPQPKPIFHTPSLSNAKKTFDQIISTS 1582
            QQQP         KN+ +PH ++ P         P  K +F T SL+ AK  F+  IST+
Sbjct: 26   QQQPHYFPKKLTKKNSPKPHETETP---------PPHKSLFKTSSLNEAKSLFNSFISTT 76

Query: 1581 QIPL--DLRHYNSLLKSFSQISNIHDSFSFLQYMTKKNHPNFTPDHSTYNILLTQSCKIP 1408
            + PL  +LR +NS L+S++ IS + DS S L +M K   P+ +PD STY++LL+QSC+ P
Sbjct: 77   KAPLLDNLRLHNSFLQSYTSISTLDDSISLLDHMVK-TLPSLSPDRSTYHVLLSQSCREP 135

Query: 1407 PNHSQDHSDLSVIRKTLDLMVENQVPPDHVAVDLAVRTLCSVSREEDAIEMIKEMGVKYS 1228
                   S LS  +K L+LM+     P+   VD+A+R+LCS  R +DAI ++KE   K+S
Sbjct: 136  D------SSLSSAQKVLNLMINKGFKPNQFTVDVAIRSLCSAGRVDDAILLVKEFSSKHS 189

Query: 1227 EPDMFTFNFMVRHLCKTRSLNYVYEFIDEMKEELSLQPDLVTYTILIENVCNSKNFREAT 1048
            +PD FT+NF+V+ LCK+R  N VY FIDEMK    ++PDLVTYTILI+NVCN+KN REA 
Sbjct: 190  KPDTFTYNFLVKCLCKSRIFNSVYSFIDEMKSSFDIKPDLVTYTILIDNVCNAKNIREAD 249

Query: 1047 RLLSVLADAGFKPDCFLYNTIMKGYCMLDRGSEVIGVYKQMKEEGVEPDLVTYNTMIYGL 868
            RL++VL + G KPD FLYNTIMKGYC+L++G E + +YKQMKEEGVEPDLVTYNT+I+GL
Sbjct: 250  RLVAVLKECGLKPDAFLYNTIMKGYCLLNKGIEAVRIYKQMKEEGVEPDLVTYNTLIFGL 309

Query: 867  SKVGRVDEARQFLVVMTEMGHFPDTVTYTSLMNGMCRKGDALGAMALLSRMEENGCSPNS 688
            SK GRV EA++ L +M E GHFPD VTYTSLMNGMCR+GD LGA ALL  ME  GCSPNS
Sbjct: 310  SKCGRVSEAKKLLKIMVESGHFPDAVTYTSLMNGMCREGDVLGAAALLEEMELKGCSPNS 369

Query: 687  CTYNTLLHGLCKSNLLEDGLQLYGVMKSAGMQLEASSYATFVRALCRDDRIAEAYQVFDY 508
            CTYNTLLHG CK   L  G++LYGV+K  GM+LE +SYATFVRALCR+ R+AEAY+VFDY
Sbjct: 370  CTYNTLLHGFCKGRRLNKGVELYGVIKKGGMKLETASYATFVRALCREGRVAEAYEVFDY 429

Query: 507  AVESKSLTDVAAYSALESTLKWAKKFKEQ 421
            AVESKSLTDVAAY+ LESTLKW KK +EQ
Sbjct: 430  AVESKSLTDVAAYTTLESTLKWLKKAREQ 458


>ref|XP_003595941.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
            gi|355484989|gb|AES66192.1| Pentatricopeptide
            repeat-containing protein [Medicago truncatula]
          Length = 472

 Score =  518 bits (1335), Expect = e-144
 Identities = 251/431 (58%), Positives = 335/431 (77%)
 Frame = -1

Query: 1713 KRPHNSKKPTRNKTLTPSPQPKPIFHTPSLSNAKKTFDQIISTSQIPLDLRHYNSLLKSF 1534
            ++PH  +K  ++++ + SP+P  +F +P+L  AK  F+  +++S  P+D R +NSLL+S+
Sbjct: 55   RKPH--QKQQQSQSQSQSPKPVSVFKSPNLQEAKSIFNSFVNSSNAPIDSRFHNSLLQSY 112

Query: 1533 SQISNIHDSFSFLQYMTKKNHPNFTPDHSTYNILLTQSCKIPPNHSQDHSDLSVIRKTLD 1354
            + IS I+DS +FL++MTK  HP+F+PD STY+ILLT  CK   +    +S LS+I +TL+
Sbjct: 113  ASISTINDSIAFLRHMTK-THPSFSPDKSTYHILLTHCCK---STDSKYSTLSLIHQTLN 168

Query: 1353 LMVENQVPPDHVAVDLAVRTLCSVSREEDAIEMIKEMGVKYSEPDMFTFNFMVRHLCKTR 1174
            LMV + + PD   VDLAVR+LC+  R +DA+E+IKE+  K+  PD++++NF+V++LCK+R
Sbjct: 169  LMVSDGISPDKGTVDLAVRSLCTADRVDDAVELIKELSSKHCSPDIYSYNFLVKNLCKSR 228

Query: 1173 SLNYVYEFIDEMKEELSLQPDLVTYTILIENVCNSKNFREATRLLSVLADAGFKPDCFLY 994
            +L+ VY             P+LVTYTILI+NVCN+KN REATRL+ +L + GFKPDCFLY
Sbjct: 229  TLSLVY-------------PNLVTYTILIDNVCNTKNLREATRLVDILEEEGFKPDCFLY 275

Query: 993  NTIMKGYCMLDRGSEVIGVYKQMKEEGVEPDLVTYNTMIYGLSKVGRVDEARQFLVVMTE 814
            NTIMKGYCML RGSE I VY +MKE+GVEPDL+TYNT+I+GLSK GRV EA++ L VM E
Sbjct: 276  NTIMKGYCMLSRGSEAIEVYNRMKEKGVEPDLITYNTLIFGLSKSGRVSEAKKLLRVMAE 335

Query: 813  MGHFPDTVTYTSLMNGMCRKGDALGAMALLSRMEENGCSPNSCTYNTLLHGLCKSNLLED 634
             GHFPD VTYTSLMNGMCRKG+ L A+ALL  ME  GCSPN+CTYNTLLHGLCKS + + 
Sbjct: 336  KGHFPDEVTYTSLMNGMCRKGETLAALALLEEMEMKGCSPNTCTYNTLLHGLCKSRMFDK 395

Query: 633  GLQLYGVMKSAGMQLEASSYATFVRALCRDDRIAEAYQVFDYAVESKSLTDVAAYSALES 454
             ++LYG MKS G++L+ +SYATFVRALC   R+A+AY+VFDYAVESKSL+DVAAYS LES
Sbjct: 396  AMELYGAMKSDGLKLDMASYATFVRALCSVGRVADAYEVFDYAVESKSLSDVAAYSTLES 455

Query: 453  TLKWAKKFKEQ 421
            TLKW++K K++
Sbjct: 456  TLKWSRKQKKK 466