BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00005190
         (1393 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002263449.1| PREDICTED: ribosome-recycling factor [Vitis ...   233   9e-59
emb|CAN68423.1| hypothetical protein VITISV_018268 [Vitis vinifera]   232   2e-58
ref|XP_002298606.1| predicted protein [Populus trichocarpa] gi|2...   226   1e-56
dbj|BAK05150.1| predicted protein [Hordeum vulgare subsp. vulgare]    222   2e-55
dbj|BAD44436.1| putative ribosome recycling factor [Arabidopsis ...   222   2e-55

>ref|XP_002263449.1| PREDICTED: ribosome-recycling factor [Vitis vinifera]
            gi|296090242|emb|CBI40061.3| unnamed protein product
            [Vitis vinifera]
          Length = 258

 Score =  233 bits (594), Expect = 9e-59
 Identities = 130/229 (56%), Positives = 157/229 (68%)
 Frame = -1

Query: 1177 TPTLGANKESSTQLLGFQFLKETRRGFAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEP 998
            +P+L  +  S+       FL+E+RRGFA                                
Sbjct: 34   SPSLNPSASSA-----LDFLRESRRGFAKGRKSKDSDAGNTVEVVPDIGPA--------- 79

Query: 997  IKPTAISQMEAALVALSRELSKIQTGRASAGLIDHIIVETGGAKMSLSRIAXXXXXXXXX 818
            +K  A+SQM+AA+VALSRELSK++TGRASAG++DHIIVETGG KM LSR+A         
Sbjct: 80   VKENAMSQMDAAVVALSRELSKLRTGRASAGMLDHIIVETGGVKMPLSRLAVVSVLDPKT 139

Query: 817  XXVTPYDPNASKEIERAIMSSPLGLNPQVDGQRLIVAIAPLTKEGIQAMCKVVTKSADDV 638
              VTPYD +A K++E AI+SSPLGLNP+ DG+RLI  I PLTKE IQAMCKVV KS +DV
Sbjct: 140  LSVTPYDLDALKQLENAIVSSPLGLNPKADGERLIAVIPPLTKEHIQAMCKVVAKSCEDV 199

Query: 637  KQSIRRARQKAFDIIKKAASSIPKDDVKRLEKEVDDLTKKYIKSAEDMC 491
            KQSIRRARQKA D+IKKA SS+PKD  KRLEKEVD+LTKK++KSAEDMC
Sbjct: 200  KQSIRRARQKALDMIKKAGSSLPKDVAKRLEKEVDELTKKFVKSAEDMC 248


>emb|CAN68423.1| hypothetical protein VITISV_018268 [Vitis vinifera]
          Length = 258

 Score =  232 bits (592), Expect = 2e-58
 Identities = 130/229 (56%), Positives = 156/229 (68%)
 Frame = -1

Query: 1177 TPTLGANKESSTQLLGFQFLKETRRGFAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEP 998
            +P+L  +  S+       FL+E+RRGFA                                
Sbjct: 34   SPSLNPSASSA-----LDFLRESRRGFAKGRKSKDSDAGNTVEVVPDIGPA--------- 79

Query: 997  IKPTAISQMEAALVALSRELSKIQTGRASAGLIDHIIVETGGAKMSLSRIAXXXXXXXXX 818
            +K  A+SQM+AA+VALSRELSK++TGRASAG++DHIIVETGG KM LSR+A         
Sbjct: 80   VKENAMSQMDAAVVALSRELSKLRTGRASAGMLDHIIVETGGVKMPLSRLAVVSVLDPKT 139

Query: 817  XXVTPYDPNASKEIERAIMSSPLGLNPQVDGQRLIVAIAPLTKEGIQAMCKVVTKSADDV 638
              VTPYD +A K++E AI+SSPLGLNP+ DG+RLI  I PLTKE IQAMCKVV KS +DV
Sbjct: 140  LSVTPYDLDALKQLENAIVSSPLGLNPKADGERLIAVIPPLTKEHIQAMCKVVAKSCEDV 199

Query: 637  KQSIRRARQKAFDIIKKAASSIPKDDVKRLEKEVDDLTKKYIKSAEDMC 491
            KQSIRRARQKA D IKKA SS+PKD  KRLEKEVD+LTKK++KSAEDMC
Sbjct: 200  KQSIRRARQKALDXIKKAGSSLPKDVAKRLEKEVDELTKKFVKSAEDMC 248


>ref|XP_002298606.1| predicted protein [Populus trichocarpa] gi|222845864|gb|EEE83411.1|
            predicted protein [Populus trichocarpa]
          Length = 273

 Score =  226 bits (576), Expect = 1e-56
 Identities = 123/224 (54%), Positives = 149/224 (66%)
 Frame = -1

Query: 1162 ANKESSTQLLGFQFLKETRRGFAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPIKPTA 983
            ++K  S  L  F FLK++RRGFA                                +K TA
Sbjct: 49   SHKLPSATLPSFDFLKQSRRGFAKGKNKSKDDSAGGTVEFVDIGPT---------VKETA 99

Query: 982  ISQMEAALVALSRELSKIQTGRASAGLIDHIIVETGGAKMSLSRIAXXXXXXXXXXXVTP 803
             SQM+AA+VALSREL K++TGRASAG++DHIIVET G K+ L+R A           V P
Sbjct: 100  NSQMDAAVVALSRELQKLRTGRASAGMLDHIIVETDGVKLPLNRSAVVSVMDAKTLSVNP 159

Query: 802  YDPNASKEIERAIMSSPLGLNPQVDGQRLIVAIAPLTKEGIQAMCKVVTKSADDVKQSIR 623
            YDPN  K++E AI+SSPLGLNPQ DG RLI AI PLTKE  QAMCKVV KS +D +QSIR
Sbjct: 160  YDPNTLKQLENAIVSSPLGLNPQRDGDRLIAAIPPLTKEHTQAMCKVVAKSCEDCRQSIR 219

Query: 622  RARQKAFDIIKKAASSIPKDDVKRLEKEVDDLTKKYIKSAEDMC 491
            RARQKA D +KKA SS PKDD K+LEKE++++TKK++KSAEDMC
Sbjct: 220  RARQKAMDTVKKAGSSFPKDDAKKLEKEIEEMTKKFVKSAEDMC 263


>dbj|BAK05150.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 260

 Score =  222 bits (566), Expect = 2e-55
 Identities = 112/169 (66%), Positives = 135/169 (79%)
 Frame = -1

Query: 997 IKPTAISQMEAALVALSRELSKIQTGRASAGLIDHIIVETGGAKMSLSRIAXXXXXXXXX 818
           +K  A +QM+ A+VALSRELSK++TGRAS G++DHI+VETG  K+ LSRIA         
Sbjct: 82  VKSAATAQMDTAVVALSRELSKLRTGRASPGMLDHIMVETGDVKVGLSRIAVVSVLDSHT 141

Query: 817 XXVTPYDPNASKEIERAIMSSPLGLNPQVDGQRLIVAIAPLTKEGIQAMCKVVTKSADDV 638
             V PYDPN  K IE AI SSPLG+NP  DG R+I A+ PLTKE +QAMCKVVTKSA+D 
Sbjct: 142 LSVMPYDPNTMKSIENAIASSPLGINPTPDGSRIIAAVPPLTKETMQAMCKVVTKSAEDF 201

Query: 637 KQSIRRARQKAFDIIKKAASSIPKDDVKRLEKEVDDLTKKYIKSAEDMC 491
           KQSIRRARQKA D IKK++SS+PKDD+KRLEKEV++LTKK+IKSA+DMC
Sbjct: 202 KQSIRRARQKALDTIKKSSSSMPKDDIKRLEKEVEELTKKFIKSADDMC 250


>dbj|BAD44436.1| putative ribosome recycling factor [Arabidopsis thaliana]
          Length = 267

 Score =  222 bits (565), Expect = 2e-55
 Identities = 110/169 (65%), Positives = 139/169 (82%)
 Frame = -1

Query: 997 IKPTAISQMEAALVALSRELSKIQTGRASAGLIDHIIVETGGAKMSLSRIAXXXXXXXXX 818
           +K  A SQMEAA+ ALSR+L+K++TGRA+ G++DHI+VETGG KM L+ +A         
Sbjct: 89  VKAAASSQMEAAIDALSRDLTKLRTGRAAPGMLDHIVVETGGVKMPLNHLALVSVLDPKT 148

Query: 817 XXVTPYDPNASKEIERAIMSSPLGLNPQVDGQRLIVAIAPLTKEGIQAMCKVVTKSADDV 638
             V PYDP+  KE+E+AI++SPLGLNP++DGQRL+ +I  LTKE IQAMCK+VTKS++ V
Sbjct: 149 LSVNPYDPDTVKELEKAIVASPLGLNPKLDGQRLVASIPALTKEHIQAMCKIVTKSSEVV 208

Query: 637 KQSIRRARQKAFDIIKKAASSIPKDDVKRLEKEVDDLTKKYIKSAEDMC 491
           KQSIRRARQKA D IKKA SS+PKD+VKRLEKEVD+LTKK++KSAEDMC
Sbjct: 209 KQSIRRARQKALDTIKKAGSSLPKDEVKRLEKEVDELTKKFVKSAEDMC 257