BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00005162
         (1416 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002270164.2| PREDICTED: ribosome biogenesis protein BMS1 ...   543   e-152
ref|XP_002328026.1| predicted protein [Populus trichocarpa] gi|2...   535   e-150
ref|XP_003606827.1| Ribosome biogenesis protein BMS1-like protei...   533   e-149
ref|XP_003606826.1| Ribosome biogenesis protein BMS1-like protei...   533   e-149
ref|XP_003606825.1| Ribosome biogenesis protein BMS1-like protei...   533   e-149

>ref|XP_002270164.2| PREDICTED: ribosome biogenesis protein BMS1 homolog [Vitis vinifera]
          Length = 1139

 Score =  543 bits (1400), Expect = e-152
 Identities = 285/481 (59%), Positives = 339/481 (70%), Gaps = 11/481 (2%)
 Frame = -3

Query: 1414 KFADIALLLIDGSYGFEMETFEFLNILQVHGFPKVMGVLTHLDEFKDVKKLRKTKQRLKH 1235
            KFAD+ALLLIDGSYGFEMETFEFLNILQVHGFPKVMGVLTHLD+FKD KKL+KTKQRLKH
Sbjct: 149  KFADLALLLIDGSYGFEMETFEFLNILQVHGFPKVMGVLTHLDKFKDAKKLKKTKQRLKH 208

Query: 1234 RFWTEIYDGAKLFYLSGLIHGRYAKREVHNLARFISVMKFHPLSWRASHPYVLVDRMEDV 1055
            RFWTEIYDGAKLFYLSGL+HG+Y KRE+HNLARFISVMKFHPLSWRASHPY+LVDR EDV
Sbjct: 209  RFWTEIYDGAKLFYLSGLVHGKYPKREIHNLARFISVMKFHPLSWRASHPYILVDRFEDV 268

Query: 1054 TPPEKVHNNKKCDRNITLYGYLRGCNMKKGTKVHIAGIGDYSLASMTGLTDPCPLPSLAK 875
            TPPE+V  N KCDRNITLYGYLRGCN+KKGTKVHIAG+GD+SLA +TGL DPCPLPS AK
Sbjct: 269  TPPERVQLNNKCDRNITLYGYLRGCNLKKGTKVHIAGVGDHSLAGVTGLADPCPLPSAAK 328

Query: 874  KKGLREKEKLFYGPMSGIGDLIYDKDAVYININDNFIQYSKVDDENGAGDEKAKGRDVGE 695
            KKGLR+++KLFY PMSG+GDL+YDKDAVYININD+ +Q+S VDDENG    K K RDVGE
Sbjct: 329  KKGLRDRDKLFYAPMSGLGDLLYDKDAVYININDHLVQFSNVDDENGGAARKGKDRDVGE 388

Query: 694  FMVKSLQNIKFSINEKLEKNFISLFGKRP-PSALQDNGDEEVPLAETEEDGMDDIEHSIQ 518
             +VKSLQN K+SI+EKLEK+FISLFG++P  S+ QD+          ++D     +  ++
Sbjct: 389  VLVKSLQNTKYSIDEKLEKSFISLFGRKPNVSSKQDHA--------AKKDATLTSKEGLE 440

Query: 517  EEFGKKSDIDRFDQEDTPDKKDPNVEDLVDDSGGESDLKEQIEFHNGRSRRKALFGNEDD 338
            EE G  S++        P  KD NVE             E+IEFH+GR RRKA+FG++ D
Sbjct: 441  EENGNASELQ-------PPLKD-NVE-------------EKIEFHDGRLRRKAIFGDDID 479

Query: 337  PDDMXXXXXXXXXXXXXXXXXXXXXXXXXXXDLKGAPSEDE---------TARWKEPLIE 185
             D                                    ED+          ++WKE L+E
Sbjct: 480  DDLKVIILLHDLDEDDEENEDDGDNLSFSGSYSSEEDGEDQKTDGDEMGNVSKWKESLVE 539

Query: 184  KMMSRQKTNLMQIVYGKLGSKAST-SIKEAQGXXXXXXXXXXDFFKPKGEINKKVSEGTD 8
            + + +Q TNLM++VYG+  +  ST S+ EA            +FFKPKGE NKK+ EG  
Sbjct: 540  RTIPKQNTNLMRLVYGEESASHSTNSVDEAHHSSEDEESEDDEFFKPKGEGNKKLREGLG 599

Query: 7    S 5
            S
Sbjct: 600  S 600


>ref|XP_002328026.1| predicted protein [Populus trichocarpa] gi|222837435|gb|EEE75814.1|
            predicted protein [Populus trichocarpa]
          Length = 1181

 Score =  535 bits (1379), Expect = e-150
 Identities = 283/491 (57%), Positives = 337/491 (68%), Gaps = 22/491 (4%)
 Frame = -3

Query: 1414 KFADIALLLIDGSYGFEMETFEFLNILQVHGFPKVMGVLTHLDEFKDVKKLRKTKQRLKH 1235
            KFAD+ALLLIDGSYGFEMETFEFLNILQVHGFPK+MGVLTHLD+FKDVKKL+KTKQRLKH
Sbjct: 146  KFADLALLLIDGSYGFEMETFEFLNILQVHGFPKIMGVLTHLDQFKDVKKLKKTKQRLKH 205

Query: 1234 RFWTEIYDGAKLFYLSGLIHGRYAKREVHNLARFISVMKFHPLSWRASHPYVLVDRMEDV 1055
            RFWTEIYDGAKLFYLSGLIHG+Y KRE+HNLARFISVMKFHPLSWR SHPYVL DR EDV
Sbjct: 206  RFWTEIYDGAKLFYLSGLIHGKYVKREIHNLARFISVMKFHPLSWRTSHPYVLADRFEDV 265

Query: 1054 TPPEKVHNNKKCDRNITLYGYLRGCNMKKGTKVHIAGIGDYSLASMTGLTDPCPLPSLAK 875
            TPPE+V  + KCDRNITLYGYLRGCN+K+GTKVHIAG+GDY+LA +T L DPCPLPS AK
Sbjct: 266  TPPERVRVDNKCDRNITLYGYLRGCNLKRGTKVHIAGVGDYNLAGVTALADPCPLPSAAK 325

Query: 874  KKGLREKEKLFYGPMSGIGDLIYDKDAVYININDNFIQYSKVDDENGAGDEKAKGRDVGE 695
            KKGLR+KEKLFY PMSG+GDL+YDKDAVYININD+F+QYS VD+++     K K +DVGE
Sbjct: 326  KKGLRDKEKLFYAPMSGLGDLVYDKDAVYININDHFVQYSNVDNKSDRMTHKGKDQDVGE 385

Query: 694  FMVKSLQNIKFSINEKLEKNFISLFGKRPPSALQDNGDEEVPLAETEEDGMDDIEHSIQ- 518
             +VKSLQN K+SI+EKLEK+FISLF +   S+   N           +D    ++HS   
Sbjct: 386  SLVKSLQNTKYSIDEKLEKSFISLFSRNNISSEAQND---------AKDNHRSVDHSYNL 436

Query: 517  --EEFGKKSDIDRFDQEDTPDKKDPNVEDLVDDSGGESD-------------------LK 401
               E G++SD +  D  ++ D+ +   +D V +  GESD                   +K
Sbjct: 437  EPNELGEESDTEDLDGSESTDEDEAAQKDAVVN--GESDGSDEEHGTAAKQKADPQDRMK 494

Query: 400  EQIEFHNGRSRRKALFGNEDDPDDMXXXXXXXXXXXXXXXXXXXXXXXXXXXDLKGAPSE 221
            EQ+EFH GR RRKA+FGN+ D  D+                             +     
Sbjct: 495  EQVEFHGGRLRRKAMFGNDIDDKDLKDCDEGSESDDDVGDQSLSDSEFSEED--RDEEDM 552

Query: 220  DETARWKEPLIEKMMSRQKTNLMQIVYGKLGSKASTSIKEAQGXXXXXXXXXXDFFKPKG 41
               ++WKE L+++  S+Q  NLMQ VYGK    AST I E Q           +FFK KG
Sbjct: 553  GNISKWKESLVDRTFSKQNNNLMQRVYGK---SASTPINEKQ-DGSEDEESDDEFFKLKG 608

Query: 40   EINKKVSEGTD 8
            E NKK+ EG D
Sbjct: 609  EGNKKLREGFD 619


>ref|XP_003606827.1| Ribosome biogenesis protein BMS1-like protein [Medicago truncatula]
            gi|355507882|gb|AES89024.1| Ribosome biogenesis protein
            BMS1-like protein [Medicago truncatula]
          Length = 988

 Score =  533 bits (1373), Expect = e-149
 Identities = 284/480 (59%), Positives = 336/480 (70%), Gaps = 11/480 (2%)
 Frame = -3

Query: 1414 KFADIALLLIDGSYGFEMETFEFLNILQVHGFPKVMGVLTHLDEFKDVKKLRKTKQRLKH 1235
            K+AD+ALLLIDGSYGFEMETFEFLNILQVHGFPKVMGVLTHLD FKDVKKLRKTKQRLKH
Sbjct: 146  KYADLALLLIDGSYGFEMETFEFLNILQVHGFPKVMGVLTHLDGFKDVKKLRKTKQRLKH 205

Query: 1234 RFWTEIYDGAKLFYLSGLIHGRYAKREVHNLARFISVMKFHPLSWRASHPYVLVDRMEDV 1055
            RFWTEIYDGAKLFYLSGLIHG+Y KREVHNLARFISVMKFHPLSWR SHPYVLVDR ED+
Sbjct: 206  RFWTEIYDGAKLFYLSGLIHGKYVKREVHNLARFISVMKFHPLSWRTSHPYVLVDRFEDI 265

Query: 1054 TPPEKVHNNKKCDRNITLYGYLRGCNMKKGTKVHIAGIGDYSLASMTGLTDPCPLPSLAK 875
            TPPE+VH N KCDR +TLYGYLRGCN+KKG KVHIAG+GDY LA +TGL DPCPLPS AK
Sbjct: 266  TPPEQVHANNKCDRKVTLYGYLRGCNLKKGNKVHIAGVGDYGLAHVTGLPDPCPLPSAAK 325

Query: 874  KKGLREKEKLFYGPMSGIGDLIYDKDAVYININDNFIQYSKVDDENGAGDEKAKGRDVGE 695
            KKGLR+KEKLFY PMSG+GDL+YDKDAVYININD+F+Q+SKVDDEN A   K K RDVG 
Sbjct: 326  KKGLRDKEKLFYAPMSGVGDLLYDKDAVYININDHFVQFSKVDDENFAMTSKGKERDVGV 385

Query: 694  FMVKSLQNIKFSINEKLEKNFISLFGKRPPSALQDNGDEEVPLAETEEDGMDDIEHSIQE 515
             +VKSLQN K+SINEKLE +FI+LF ++   + +  G  +    + EEDG        + 
Sbjct: 386  DLVKSLQNTKYSINEKLENSFINLFDQKGKVSSEALGGAQGTNEDVEEDG--------KV 437

Query: 514  EFGKKSDIDRFDQEDTPDKKDPNVEDLVDDSGGESDLKEQIEFHNGRSRRKALFGNEDDP 335
            E    ++ID     D  +  D +  D + +  G + LKE+IEFHNGR RRKA+FGN+ D 
Sbjct: 438  ETSDNNEID----SDASESSDRDEADAITNDDG-NHLKEKIEFHNGRQRRKAIFGNDIDQ 492

Query: 334  DDMXXXXXXXXXXXXXXXXXXXXXXXXXXXDLKGAPSEDE----------TARWKEPLIE 185
             D                              +G   EDE           ++WKE L E
Sbjct: 493  SDQMVSLKVVFPDSEEEEEEEEE---------EGEDEEDEDDTHEDDMGNISKWKESLAE 543

Query: 184  KMMSRQKTNLMQIVYGKLGSKASTSIKEAQGXXXXXXXXXXDFFKPKGEINKKVS-EGTD 8
            ++++R+  +LMQ+VYG+  +  STS+ E             DFF PK EI K+ + +G D
Sbjct: 544  RILARKSPSLMQLVYGE-STNNSTSMDEEN--DSSEDEENGDFFIPKEEIKKQYTRDGLD 600


>ref|XP_003606826.1| Ribosome biogenesis protein BMS1-like protein [Medicago truncatula]
            gi|355507881|gb|AES89023.1| Ribosome biogenesis protein
            BMS1-like protein [Medicago truncatula]
          Length = 1175

 Score =  533 bits (1373), Expect = e-149
 Identities = 284/480 (59%), Positives = 336/480 (70%), Gaps = 11/480 (2%)
 Frame = -3

Query: 1414 KFADIALLLIDGSYGFEMETFEFLNILQVHGFPKVMGVLTHLDEFKDVKKLRKTKQRLKH 1235
            K+AD+ALLLIDGSYGFEMETFEFLNILQVHGFPKVMGVLTHLD FKDVKKLRKTKQRLKH
Sbjct: 146  KYADLALLLIDGSYGFEMETFEFLNILQVHGFPKVMGVLTHLDGFKDVKKLRKTKQRLKH 205

Query: 1234 RFWTEIYDGAKLFYLSGLIHGRYAKREVHNLARFISVMKFHPLSWRASHPYVLVDRMEDV 1055
            RFWTEIYDGAKLFYLSGLIHG+Y KREVHNLARFISVMKFHPLSWR SHPYVLVDR ED+
Sbjct: 206  RFWTEIYDGAKLFYLSGLIHGKYVKREVHNLARFISVMKFHPLSWRTSHPYVLVDRFEDI 265

Query: 1054 TPPEKVHNNKKCDRNITLYGYLRGCNMKKGTKVHIAGIGDYSLASMTGLTDPCPLPSLAK 875
            TPPE+VH N KCDR +TLYGYLRGCN+KKG KVHIAG+GDY LA +TGL DPCPLPS AK
Sbjct: 266  TPPEQVHANNKCDRKVTLYGYLRGCNLKKGNKVHIAGVGDYGLAHVTGLPDPCPLPSAAK 325

Query: 874  KKGLREKEKLFYGPMSGIGDLIYDKDAVYININDNFIQYSKVDDENGAGDEKAKGRDVGE 695
            KKGLR+KEKLFY PMSG+GDL+YDKDAVYININD+F+Q+SKVDDEN A   K K RDVG 
Sbjct: 326  KKGLRDKEKLFYAPMSGVGDLLYDKDAVYININDHFVQFSKVDDENFAMTSKGKERDVGV 385

Query: 694  FMVKSLQNIKFSINEKLEKNFISLFGKRPPSALQDNGDEEVPLAETEEDGMDDIEHSIQE 515
             +VKSLQN K+SINEKLE +FI+LF ++   + +  G  +    + EEDG        + 
Sbjct: 386  DLVKSLQNTKYSINEKLENSFINLFDQKGKVSSEALGGAQGTNEDVEEDG--------KV 437

Query: 514  EFGKKSDIDRFDQEDTPDKKDPNVEDLVDDSGGESDLKEQIEFHNGRSRRKALFGNEDDP 335
            E    ++ID     D  +  D +  D + +  G + LKE+IEFHNGR RRKA+FGN+ D 
Sbjct: 438  ETSDNNEID----SDASESSDRDEADAITNDDG-NHLKEKIEFHNGRQRRKAIFGNDIDQ 492

Query: 334  DDMXXXXXXXXXXXXXXXXXXXXXXXXXXXDLKGAPSEDE----------TARWKEPLIE 185
             D                              +G   EDE           ++WKE L E
Sbjct: 493  SDQMVSLKVVFPDSEEEEEEEEE---------EGEDEEDEDDTHEDDMGNISKWKESLAE 543

Query: 184  KMMSRQKTNLMQIVYGKLGSKASTSIKEAQGXXXXXXXXXXDFFKPKGEINKKVS-EGTD 8
            ++++R+  +LMQ+VYG+  +  STS+ E             DFF PK EI K+ + +G D
Sbjct: 544  RILARKSPSLMQLVYGE-STNNSTSMDEEN--DSSEDEENGDFFIPKEEIKKQYTRDGLD 600


>ref|XP_003606825.1| Ribosome biogenesis protein BMS1-like protein [Medicago truncatula]
            gi|355507880|gb|AES89022.1| Ribosome biogenesis protein
            BMS1-like protein [Medicago truncatula]
          Length = 1200

 Score =  533 bits (1373), Expect = e-149
 Identities = 284/480 (59%), Positives = 336/480 (70%), Gaps = 11/480 (2%)
 Frame = -3

Query: 1414 KFADIALLLIDGSYGFEMETFEFLNILQVHGFPKVMGVLTHLDEFKDVKKLRKTKQRLKH 1235
            K+AD+ALLLIDGSYGFEMETFEFLNILQVHGFPKVMGVLTHLD FKDVKKLRKTKQRLKH
Sbjct: 146  KYADLALLLIDGSYGFEMETFEFLNILQVHGFPKVMGVLTHLDGFKDVKKLRKTKQRLKH 205

Query: 1234 RFWTEIYDGAKLFYLSGLIHGRYAKREVHNLARFISVMKFHPLSWRASHPYVLVDRMEDV 1055
            RFWTEIYDGAKLFYLSGLIHG+Y KREVHNLARFISVMKFHPLSWR SHPYVLVDR ED+
Sbjct: 206  RFWTEIYDGAKLFYLSGLIHGKYVKREVHNLARFISVMKFHPLSWRTSHPYVLVDRFEDI 265

Query: 1054 TPPEKVHNNKKCDRNITLYGYLRGCNMKKGTKVHIAGIGDYSLASMTGLTDPCPLPSLAK 875
            TPPE+VH N KCDR +TLYGYLRGCN+KKG KVHIAG+GDY LA +TGL DPCPLPS AK
Sbjct: 266  TPPEQVHANNKCDRKVTLYGYLRGCNLKKGNKVHIAGVGDYGLAHVTGLPDPCPLPSAAK 325

Query: 874  KKGLREKEKLFYGPMSGIGDLIYDKDAVYININDNFIQYSKVDDENGAGDEKAKGRDVGE 695
            KKGLR+KEKLFY PMSG+GDL+YDKDAVYININD+F+Q+SKVDDEN A   K K RDVG 
Sbjct: 326  KKGLRDKEKLFYAPMSGVGDLLYDKDAVYININDHFVQFSKVDDENFAMTSKGKERDVGV 385

Query: 694  FMVKSLQNIKFSINEKLEKNFISLFGKRPPSALQDNGDEEVPLAETEEDGMDDIEHSIQE 515
             +VKSLQN K+SINEKLE +FI+LF ++   + +  G  +    + EEDG        + 
Sbjct: 386  DLVKSLQNTKYSINEKLENSFINLFDQKGKVSSEALGGAQGTNEDVEEDG--------KV 437

Query: 514  EFGKKSDIDRFDQEDTPDKKDPNVEDLVDDSGGESDLKEQIEFHNGRSRRKALFGNEDDP 335
            E    ++ID     D  +  D +  D + +  G + LKE+IEFHNGR RRKA+FGN+ D 
Sbjct: 438  ETSDNNEID----SDASESSDRDEADAITNDDG-NHLKEKIEFHNGRQRRKAIFGNDIDQ 492

Query: 334  DDMXXXXXXXXXXXXXXXXXXXXXXXXXXXDLKGAPSEDE----------TARWKEPLIE 185
             D                              +G   EDE           ++WKE L E
Sbjct: 493  SDQMVSLKVVFPDSEEEEEEEEE---------EGEDEEDEDDTHEDDMGNISKWKESLAE 543

Query: 184  KMMSRQKTNLMQIVYGKLGSKASTSIKEAQGXXXXXXXXXXDFFKPKGEINKKVS-EGTD 8
            ++++R+  +LMQ+VYG+  +  STS+ E             DFF PK EI K+ + +G D
Sbjct: 544  RILARKSPSLMQLVYGE-STNNSTSMDEEN--DSSEDEENGDFFIPKEEIKKQYTRDGLD 600