BLASTX nr result
ID: Coptis23_contig00005119
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00005119
(1084 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI21840.3| unnamed protein product [Vitis vinifera] 196 1e-47
ref|XP_002322750.1| predicted protein [Populus trichocarpa] gi|2... 161 2e-37
ref|XP_002273904.1| PREDICTED: pentatricopeptide repeat-containi... 160 4e-37
emb|CAN73453.1| hypothetical protein VITISV_024964 [Vitis vinifera] 160 4e-37
ref|XP_004168984.1| PREDICTED: pentatricopeptide repeat-containi... 160 5e-37
>emb|CBI21840.3| unnamed protein product [Vitis vinifera]
Length = 446
Score = 196 bits (497), Expect = 1e-47
Identities = 115/320 (35%), Positives = 169/320 (52%), Gaps = 48/320 (15%)
Frame = +3
Query: 69 RIRAVPQKSISLVPFLKDWITEGRFLDKQVIHTLILSLRDRTRFRQALEIYEWTSDRGYF 248
RI +S+VP L+ W EGR + +Q +H LI LR R+ ALEIYEW D+ YF
Sbjct: 40 RISPAIDLRVSIVPALEQWRKEGRSIKQQDLHRLIRKLRTFKRYNHALEIYEWIRDKFYF 99
Query: 249 MPSVDDFAIRLDLISKVYGIKEVANYFDSIPEKSRGVKVYRILFNCHVNEKSIEKVELLL 428
S D AI+LDLISKV+G+++ YF+ P R +VY L NC+ +KS+EK E ++
Sbjct: 100 DISPGDVAIQLDLISKVHGLEQAEKYFNETPNSLRSFQVYGALLNCYSQKKSLEKAEAIM 159
Query: 429 QKMRELGLSLGKPDYHALLKLYFQEGQYEKADDLMDEMKEKGIWQDNLIYAFCLSSCVAA 608
Q+MR++G + Y+ +L LY + G++EK D+LM EM+E GI D+ Y L++ A
Sbjct: 160 QEMRDMGF-VKTLSYNVMLGLYSRLGKHEKLDNLMQEMEENGIGLDSFTYCIRLNAYCAT 218
Query: 609 LKMYGMEKILQRMKAD---------------------------------LLKLKDVTGAN 689
M GMEK+L +++ D LLKL D+ GA
Sbjct: 219 SDMEGMEKLLMKLETDPAVNSDWNAYIVAANGYLKADLKEKAVEMLKNSLLKLDDMDGAE 278
Query: 690 NILKN---------------LVTTYCSNGCFEKAEGLISKTIEEGKKPSASPCSLLIFGY 824
+ L+ YC G EKAE L+S+ IE+G++P A L GY
Sbjct: 279 KTFEEWLSGNKFFDFRVPNLLIRAYCKKGLLEKAEQLVSRAIEQGEEPIAVTWDALAAGY 338
Query: 825 LKDNQIPKAIKAMQNAILAS 884
++NQ+ KA+ ++ A+LA+
Sbjct: 339 HENNQMEKAVDTLKKALLAT 358
Score = 57.8 bits (138), Expect = 5e-06
Identities = 32/71 (45%), Positives = 46/71 (64%), Gaps = 1/71 (1%)
Frame = +3
Query: 873 ILASDTTTLTSN-PKSTQYKNLYERIAPFCDQSVSMVPILEQWIEEGKSVSKDKLISLIK 1049
+L T TLTSN PK ++L RI+P D VS+VP LEQW +EG+S+ + L LI+
Sbjct: 20 VLPYSTETLTSNAPK----ESLQSRISPAIDLRVSIVPALEQWRKEGRSIKQQDLHRLIR 75
Query: 1050 QLKVCRRFKHA 1082
+L+ +R+ HA
Sbjct: 76 KLRTFKRYNHA 86
>ref|XP_002322750.1| predicted protein [Populus trichocarpa] gi|222867380|gb|EEF04511.1|
predicted protein [Populus trichocarpa]
Length = 516
Score = 161 bits (408), Expect = 2e-37
Identities = 97/251 (38%), Positives = 141/251 (56%)
Frame = +3
Query: 69 RIRAVPQKSISLVPFLKDWITEGRFLDKQVIHTLILSLRDRTRFRQALEIYEWTSDRGYF 248
R+ + ++S++P L WI EG + + +IH LI LR R+ ALEI W +D+ Y
Sbjct: 51 RLSRIRDHNVSVIPVLDKWIQEGETIWEDLIHALIKELRQYRRYHHALEISMWMTDKRYL 110
Query: 249 MPSVDDFAIRLDLISKVYGIKEVANYFDSIPEKSRGVKVYRILFNCHVNEKSIEKVELLL 428
+ A+RLDLISKV+GI++V NYF++IP K +G++ Y L NC+ KS+EK E ++
Sbjct: 111 ALTSRAVAVRLDLISKVHGIEQVENYFNNIPTKLKGLESYGALLNCYAYVKSVEKAEAVM 170
Query: 429 QKMRELGLSLGKPDYHALLKLYFQEGQYEKADDLMDEMKEKGIWQDNLIYAFCLSSCVAA 608
Q+MRELG + + +L LY++ G EK D LM EM+E GI D Y LSS AA
Sbjct: 171 QRMRELGFARKPLVFTVMLNLYYKTGNTEKLDPLMREMEENGISFDKFAYCIRLSSYAAA 230
Query: 609 LKMYGMEKILQRMKADLLKLKDVTGANNILKNLVTTYCSNGCFEKAEGLISKTIEEGKKP 788
G+EK L+R+++D N +L +NG + K GL+ K +E K+
Sbjct: 231 SDSEGLEKTLKRIESD---------PNVVLDWATYATVANG-YSKV-GLLDKALEMLKR- 278
Query: 789 SASPCSLLIFG 821
C LI G
Sbjct: 279 ----CERLITG 285
>ref|XP_002273904.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20710,
mitochondrial [Vitis vinifera]
Length = 499
Score = 160 bits (406), Expect = 4e-37
Identities = 88/215 (40%), Positives = 127/215 (59%), Gaps = 4/215 (1%)
Frame = +3
Query: 69 RIRAVPQKSISLVPFLKDWITEGRFLDKQVIHTLILSLRDRTRFRQALEIYEWTSDRGYF 248
RI +S+VP L+ W EGR + +Q +H LI LR R+ ALEIYEW D+ YF
Sbjct: 40 RISPAIDLRVSIVPALEQWRKEGRSIKQQDLHRLIRKLRTFKRYNHALEIYEWIRDKFYF 99
Query: 249 MPSVDDFAIRLDLISKVYGIKEVANYFDSIPEKSRGVKVYRILFNCHVNEKSIEKVELLL 428
S D AI+LDLISKV+G+++ YF+ P R +VY L NC+ +KS+EK E ++
Sbjct: 100 DISPGDVAIQLDLISKVHGLEQAEKYFNETPNSLRSFQVYGALLNCYSQKKSLEKAEAIM 159
Query: 429 QKMRELGLSLGKPDYHALLKLYFQEGQYEKADDLMDEMKEKGIWQDNLIYAFCLSSCVAA 608
Q+MR++G + Y+ +L LY + G++EK D+LM EM+E GI D+ Y L++ A
Sbjct: 160 QEMRDMGF-VKTLSYNVMLGLYSRLGKHEKLDNLMQEMEENGIGLDSFTYCIRLNAYCAT 218
Query: 609 LKMYGMEKILQRMKADLLKLKD----VTGANNILK 701
M GMEK+L +++ D D + AN LK
Sbjct: 219 SDMEGMEKLLMKLETDPAVNSDWNAYIVAANGYLK 253
Score = 57.8 bits (138), Expect = 5e-06
Identities = 32/71 (45%), Positives = 46/71 (64%), Gaps = 1/71 (1%)
Frame = +3
Query: 873 ILASDTTTLTSN-PKSTQYKNLYERIAPFCDQSVSMVPILEQWIEEGKSVSKDKLISLIK 1049
+L T TLTSN PK ++L RI+P D VS+VP LEQW +EG+S+ + L LI+
Sbjct: 20 VLPYSTETLTSNAPK----ESLQSRISPAIDLRVSIVPALEQWRKEGRSIKQQDLHRLIR 75
Query: 1050 QLKVCRRFKHA 1082
+L+ +R+ HA
Sbjct: 76 KLRTFKRYNHA 86
>emb|CAN73453.1| hypothetical protein VITISV_024964 [Vitis vinifera]
Length = 499
Score = 160 bits (406), Expect = 4e-37
Identities = 88/215 (40%), Positives = 127/215 (59%), Gaps = 4/215 (1%)
Frame = +3
Query: 69 RIRAVPQKSISLVPFLKDWITEGRFLDKQVIHTLILSLRDRTRFRQALEIYEWTSDRGYF 248
RI +S+VP L+ W EGR + +Q +H LI LR R+ ALEIYEW D+ YF
Sbjct: 40 RISPAIDLRVSIVPALEQWRKEGRSIKQQDLHRLIRKLRTFKRYNHALEIYEWIRDKFYF 99
Query: 249 MPSVDDFAIRLDLISKVYGIKEVANYFDSIPEKSRGVKVYRILFNCHVNEKSIEKVELLL 428
S D AI+LDLISKV+G+++ YF+ P R +VY L NC+ +KS+EK E ++
Sbjct: 100 DISPGDVAIQLDLISKVHGLEQAEKYFNETPNSLRSFQVYGALLNCYSQKKSLEKAEAIM 159
Query: 429 QKMRELGLSLGKPDYHALLKLYFQEGQYEKADDLMDEMKEKGIWQDNLIYAFCLSSCVAA 608
Q+MR++G + Y+ +L LY + G++EK D+LM EM+E GI D+ Y L++ A
Sbjct: 160 QEMRDMGF-VKTLSYNVMLGLYSRLGKHEKLDNLMQEMEENGIGLDSFTYCIRLNAYCAT 218
Query: 609 LKMYGMEKILQRMKADLLKLKD----VTGANNILK 701
M GMEK+L +++ D D + AN LK
Sbjct: 219 SDMEGMEKLLMKLETDPAVNSDWNAYIVAANGYLK 253
Score = 57.8 bits (138), Expect = 5e-06
Identities = 32/71 (45%), Positives = 46/71 (64%), Gaps = 1/71 (1%)
Frame = +3
Query: 873 ILASDTTTLTSN-PKSTQYKNLYERIAPFCDQSVSMVPILEQWIEEGKSVSKDKLISLIK 1049
+L T TLTSN PK ++L RI+P D VS+VP LEQW +EG+S+ + L LI+
Sbjct: 20 VLPYSTETLTSNAPK----ESLQSRISPAIDLRVSIVPALEQWRKEGRSIKQQDLHRLIR 75
Query: 1050 QLKVCRRFKHA 1082
+L+ +R+ HA
Sbjct: 76 KLRTFKRYNHA 86
>ref|XP_004168984.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20710,
mitochondrial-like [Cucumis sativus]
Length = 461
Score = 160 bits (405), Expect = 5e-37
Identities = 82/240 (34%), Positives = 143/240 (59%), Gaps = 3/240 (1%)
Frame = +3
Query: 69 RIRAVPQKSISLVPFLKDWITEGRFLDKQVIHTLILSLRDRTRFRQALEIYEWTSDRGYF 248
RI V +IS+ P L W+ EGR + + + +I LR RF+ ALEI +W SD+ YF
Sbjct: 34 RISPVGDPNISVTPLLDQWVLEGRLVQQDELRHIIKELRVYKRFKHALEISKWMSDKRYF 93
Query: 249 MPSVDDFAIRLDLISKVYGIKEVANYFDSIPEKSRGVKVYRILFNCHVNEKSIEKVELLL 428
S D AIR++LI +V+G+++V +YFD++P + + +V+ L NC+ +EK ++K +
Sbjct: 94 PLSTADIAIRMNLILRVHGLEQVEDYFDNMPSQLKRYQVHIALLNCYAHEKCVDKANAFM 153
Query: 429 QKMRELGLSLGKPDYHALLKLYFQEGQYEKADDLMDEMKEKGIWQDNLIYAFCLSSCVAA 608
QK++E+G + Y+ ++ LY Q G++E+ D L+ EMKE+G++ D Y+ +S+ AA
Sbjct: 154 QKIKEMGFANSPLPYNIMMNLYHQIGEFERLDSLLKEMKERGVYYDRFTYSIRISAYAAA 213
Query: 609 LKMYGMEKILQRMKAD---LLKLKDVTGANNILKNLVTTYCSNGCFEKAEGLISKTIEEG 779
G+EKI+++M+++ +L A N + S +K+EGL++ ++G
Sbjct: 214 SDFRGIEKIMEQMESNPSIVLDWNCYVIAANAYNKVGLIDKSISMLKKSEGLLANVKKKG 273
Score = 62.0 bits (149), Expect = 2e-07
Identities = 26/51 (50%), Positives = 40/51 (78%)
Frame = +3
Query: 930 NLYERIAPFCDQSVSMVPILEQWIEEGKSVSKDKLISLIKQLKVCRRFKHA 1082
NLY RI+P D ++S+ P+L+QW+ EG+ V +D+L +IK+L+V +RFKHA
Sbjct: 30 NLYRRISPVGDPNISVTPLLDQWVLEGRLVQQDELRHIIKELRVYKRFKHA 80