BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00005111
         (1442 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002264417.1| PREDICTED: KH domain-containing protein At4g...   516   e-144
ref|XP_003549298.1| PREDICTED: poly(rC)-binding protein 3-like [...   477   e-132
ref|XP_003542958.1| PREDICTED: poly(rC)-binding protein 3-like [...   476   e-132
ref|XP_003546434.1| PREDICTED: KH domain-containing protein At4g...   470   e-130
ref|XP_002332094.1| predicted protein [Populus trichocarpa] gi|2...   470   e-130

>ref|XP_002264417.1| PREDICTED: KH domain-containing protein At4g18375 isoform 1 [Vitis
            vinifera]
          Length = 466

 Score =  516 bits (1330), Expect = e-144
 Identities = 271/392 (69%), Positives = 319/392 (81%), Gaps = 4/392 (1%)
 Frame = +3

Query: 15   SAEKRWPGWPGDSVFRLVVPVLKVGSIIGRKGELIKKMCEETRARIRILDGVLGTLDRVV 194
            ++EK+WPGWPGD VFRL+VPVLKVGSIIGRKGELIKKMCEETRARIR+LDG +GT DR+V
Sbjct: 66   ASEKKWPGWPGDCVFRLIVPVLKVGSIIGRKGELIKKMCEETRARIRVLDGAVGTSDRIV 125

Query: 195  LISGKEEPEAQISPAMNAVLRVFKRINGLXXXXXXXXXXXXXX---CSIRLLAASSQAIN 365
            LISG+EEPEA +SPAM+AV+RVFKR+ GL                 CSIRLL AS+QAIN
Sbjct: 126  LISGREEPEAPLSPAMDAVIRVFKRVTGLSESEGDGKAYGAAGVAFCSIRLLVASTQAIN 185

Query: 366  LIGKQGSQIKAIQESSGASVRVLSGDEVPHYATSDERVVEIQGESLKVLKALEAVIGHLR 545
            LIGKQGS IK+IQES+GASVRVLSGDEVP YA +DER+VE+QGE+LKV KALEAV+GHLR
Sbjct: 186  LIGKQGSLIKSIQESTGASVRVLSGDEVPFYAAADERIVELQGEALKVQKALEAVVGHLR 245

Query: 546  KFLVDHSIIPLFEKVNNPTVSQERPAETWADKAQSLVQTASQVTSQAGITSDYPLSIKRD 725
            KFLVDHS++PLFE+  N T+SQ+R ++TWADK  SL+      TSQ G+ SDY L  KR+
Sbjct: 246  KFLVDHSVLPLFERTYNATISQDRQSDTWADK--SLLHG----TSQTGMGSDYSLPAKRE 299

Query: 726  SLFLDRDTQLESQMHHSSLSLYGQDPGFPGLRTSGLSRASAAIISQITQTMQIPLAYAED 905
            SL+LDR+TQ+E    HS L +YGQ+ G  G+R+SGL RA A I++QI QTMQIPL+YAED
Sbjct: 300  SLYLDRETQME----HSGLPMYGQEHGLSGIRSSGLGRAGAPIVTQIAQTMQIPLSYAED 355

Query: 906  XXXXXXXXXXXXRRTSGAILTVQESRGLPDEITVEIKGTTSQVQTAQQLIQDFLAGHKDP 1085
                        RRTSGAILTVQESRGLPDEITVEIKGT+SQVQTAQQLIQ+F++ HK+P
Sbjct: 356  IIGIGGANIAYIRRTSGAILTVQESRGLPDEITVEIKGTSSQVQTAQQLIQEFISNHKEP 415

Query: 1086 VSSSYGKMDTGLR-SYSQLGNTPYSSSSLATQ 1178
            V SSYGKMD+GLR SYSQLGNT YSSSSL++Q
Sbjct: 416  VPSSYGKMDSGLRSSYSQLGNTSYSSSSLSSQ 447


>ref|XP_003549298.1| PREDICTED: poly(rC)-binding protein 3-like [Glycine max]
          Length = 436

 Score =  477 bits (1227), Expect = e-132
 Identities = 252/392 (64%), Positives = 308/392 (78%), Gaps = 3/392 (0%)
 Frame = +3

Query: 12   SSAEKRWPGWPGDSVFRLVVPVLKVGSIIGRKGELIKKMCEETRARIRILDGVLGTLDRV 191
            ++AEKRWPGWPG  VFRL+VPVLKVGSIIGRKGELIKK CEET+ARIR+LDG +GT DR+
Sbjct: 33   AAAEKRWPGWPGHCVFRLIVPVLKVGSIIGRKGELIKKTCEETKARIRVLDGAVGTSDRI 92

Query: 192  VLISGKEEPEAQISPAMNAVLRVFKRINGLXXXXXXXXXXXXXXCSIRLLAASSQAINLI 371
            VLISGKEEPEA +SPAMNAV+RVFKR++G               CS+RLL AS+QAINLI
Sbjct: 93   VLISGKEEPEAPLSPAMNAVIRVFKRVSGFSEIDAENKASAVAFCSVRLLVASTQAINLI 152

Query: 372  GKQGSQIKAIQESSGASVRVLSGDEVPHYATSDERVVEIQGESLKVLKALEAVIGHLRKF 551
            GKQGS IK+IQE++GASVRVLSGDEVP YA +DER+VE+QGE++KVLKALEAV+GHLRKF
Sbjct: 153  GKQGSLIKSIQENTGASVRVLSGDEVPFYAAADERIVELQGEAMKVLKALEAVVGHLRKF 212

Query: 552  LVDHSIIPLFEKVNNPTVSQERPAE-TWADKAQSLVQTASQVTSQAGITSDYPLSIKRDS 728
            LVD+S++PLFEK  N T+SQE  A+ TW DK       +    SQ  I +D PLS KRDS
Sbjct: 213  LVDNSVLPLFEKTYNATISQEHQADTTWVDK------PSLHSASQPSIVTDLPLSTKRDS 266

Query: 729  LFLDRDTQLESQMHHSSLSLYGQDPGFPGLRTSGLSRASA-AIISQITQTMQIPLAYAED 905
            LF DR++QL+S +  S++S+YGQD    GLR+S LSR SA  I++ + QTMQIPL+YAED
Sbjct: 267  LFADRESQLDSLLPPSTMSIYGQDSSLSGLRSSALSRPSAPPIVTTVIQTMQIPLSYAED 326

Query: 906  XXXXXXXXXXXXRRTSGAILTVQESRGLPDEITVEIKGTTSQVQTAQQLIQDFLAGHKDP 1085
                        R TSGAILTVQES  +PDEI VEIKGT+SQVQTAQQLIQ+ ++ HK+P
Sbjct: 327  IIGIQGTNIEYIRCTSGAILTVQES-PVPDEIIVEIKGTSSQVQTAQQLIQEVISNHKEP 385

Query: 1086 VSSSYGKMDTGLR-SYSQLGNTPYSSSSLATQ 1178
            ++S+Y ++DTGLR SY QLG++ YSSSSL++Q
Sbjct: 386  LASNYSRLDTGLRSSYPQLGSSSYSSSSLSSQ 417


>ref|XP_003542958.1| PREDICTED: poly(rC)-binding protein 3-like [Glycine max]
          Length = 436

 Score =  476 bits (1226), Expect = e-132
 Identities = 252/392 (64%), Positives = 309/392 (78%), Gaps = 3/392 (0%)
 Frame = +3

Query: 12   SSAEKRWPGWPGDSVFRLVVPVLKVGSIIGRKGELIKKMCEETRARIRILDGVLGTLDRV 191
            ++AEKRWPGWPG  VFRL+VPVLKVGSIIGRKGELIKK CEET+ARIR+LDG +GT DR+
Sbjct: 33   AAAEKRWPGWPGHCVFRLIVPVLKVGSIIGRKGELIKKTCEETKARIRVLDGAVGTSDRI 92

Query: 192  VLISGKEEPEAQISPAMNAVLRVFKRINGLXXXXXXXXXXXXXXCSIRLLAASSQAINLI 371
            VLISGKE+ EA +SPAM+AV+RVFKR++G               CS+RLL AS+QAINLI
Sbjct: 93   VLISGKEDLEAPLSPAMDAVIRVFKRVSGFSEIDAKNKASAVAFCSVRLLVASTQAINLI 152

Query: 372  GKQGSQIKAIQESSGASVRVLSGDEVPHYATSDERVVEIQGESLKVLKALEAVIGHLRKF 551
            GKQGS IK+IQE++GASVRVLSGDEVP YA +DER+VE+QGE++KVLKALEAV+GHLRKF
Sbjct: 153  GKQGSLIKSIQENTGASVRVLSGDEVPFYAAADERIVELQGEAMKVLKALEAVVGHLRKF 212

Query: 552  LVDHSIIPLFEKVNNPTVSQERPAE-TWADKAQSLVQTASQVTSQAGITSDYPLSIKRDS 728
            LVD+S++PLFEK  N T+SQER A+ TW DK       +    SQ  I +D PLS KRDS
Sbjct: 213  LVDNSVLPLFEKTYNATISQERQADTTWVDK------PSLHSASQPSIVTDIPLSTKRDS 266

Query: 729  LFLDRDTQLESQMHHSSLSLYGQDPGFPGLRTSGLSRASA-AIISQITQTMQIPLAYAED 905
            LF DR++QL+S +  S++S+YGQD    GLR+S LSR SA  I++ + QTMQIPL+YAED
Sbjct: 267  LFADRESQLDSLLPPSTMSMYGQDSSLSGLRSSALSRPSAPPIVTTVIQTMQIPLSYAED 326

Query: 906  XXXXXXXXXXXXRRTSGAILTVQESRGLPDEITVEIKGTTSQVQTAQQLIQDFLAGHKDP 1085
                        RRTSGAILTVQESR +PDEI VEIKGT+SQVQTAQQLIQ+ ++ H +P
Sbjct: 327  IIGIQGTNIEYIRRTSGAILTVQESR-VPDEIIVEIKGTSSQVQTAQQLIQEVISNHTEP 385

Query: 1086 VSSSYGKMDTGLR-SYSQLGNTPYSSSSLATQ 1178
            V+S+Y ++DTGLR SY QLG++ YSSSSL++Q
Sbjct: 386  VASNYSRLDTGLRSSYPQLGSSSYSSSSLSSQ 417


>ref|XP_003546434.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine max]
          Length = 442

 Score =  470 bits (1210), Expect = e-130
 Identities = 253/396 (63%), Positives = 307/396 (77%), Gaps = 4/396 (1%)
 Frame = +3

Query: 3    SSSSSAEKRWPGWPGDSVFRLVVPVLKVGSIIGRKGELIKKMCEETRARIRILDGVLGTL 182
            ++S+  EKRWPGWPGD VFRL+VPV KVGSIIGRKGELIKKMCEETR+RIR+LD  LGT 
Sbjct: 36   AASTPPEKRWPGWPGDCVFRLIVPVGKVGSIIGRKGELIKKMCEETRSRIRVLDAPLGTP 95

Query: 183  DRVVLISGKEEPEAQISPAMNAVLRVFKRINGLXXXXXXXXXXXXXX--CSIRLLAASSQ 356
            DR+VL+SGKEEPEA +SPAM+AV+R+FKR++GL                CSIRLL AS+Q
Sbjct: 96   DRIVLVSGKEEPEAALSPAMDAVVRIFKRVSGLSETDAENKESAAGLAFCSIRLLVASTQ 155

Query: 357  AINLIGKQGSQIKAIQESSGASVRVLSGDEVPHYATSDERVVEIQGESLKVLKALEAVIG 536
            AINLIGKQGS IK+IQE++ ASVRVLSGDEV  YAT DER+VEIQGE+LKVLKALEAV+G
Sbjct: 156  AINLIGKQGSLIKSIQENTSASVRVLSGDEVQSYATVDERIVEIQGEALKVLKALEAVVG 215

Query: 537  HLRKFLVDHSIIPLFEKVNNPTVSQERPAETWADKAQSLVQTASQVTSQAGITSDYPLSI 716
            HLRKFLVDHS++PLFEK  N + SQ+R AETW+DK  SL+ T    TS+  I +D P S 
Sbjct: 216  HLRKFLVDHSVLPLFEKTYNASTSQDRQAETWSDK--SLLHT----TSRTSIFADIPYST 269

Query: 717  KRDSLFLDRDTQLESQMHHSSLSLYGQDPGFPGLRTSGLSRASAAIISQITQTMQIPLAY 896
            KRDS+  DR++QL+S +  S++SLYGQD    G+R+S L R  A I++ + QTMQIPL+Y
Sbjct: 270  KRDSVLADRESQLDSFLPSSTMSLYGQDSSLSGVRSSALGRVGAPIVTTVIQTMQIPLSY 329

Query: 897  AEDXXXXXXXXXXXXRRTSGAILTVQESRGLPDEITVEIKGTTSQVQTAQQLIQDFLAGH 1076
            AED            RRTSGAILTVQESR +PDEI VEIKGT+S+VQTAQQLIQD ++ H
Sbjct: 330  AEDIIGIQGTNIEYIRRTSGAILTVQESR-VPDEIVVEIKGTSSEVQTAQQLIQDVISSH 388

Query: 1077 KDPVSSSYGKMDTGLR-SYSQLGNTP-YSSSSLATQ 1178
            K+P++SSYG++D G R SYSQLG T     SSL++Q
Sbjct: 389  KEPITSSYGRLDAGPRSSYSQLGTTSRLPPSSLSSQ 424


>ref|XP_002332094.1| predicted protein [Populus trichocarpa] gi|222874914|gb|EEF12045.1|
            predicted protein [Populus trichocarpa]
          Length = 460

 Score =  470 bits (1209), Expect = e-130
 Identities = 243/395 (61%), Positives = 299/395 (75%), Gaps = 7/395 (1%)
 Frame = +3

Query: 12   SSAEKRWPGWPGDSVFRLVVPVLKVGSIIGRKGELIKKMCEETRARIRILDGVLGTLDRV 191
            S ++ +WPGWPGD+VFRL+VPV KVGSIIGRKGEL+KKMC+ETRARIRIL+G LG  DR+
Sbjct: 40   SQSQDKWPGWPGDNVFRLIVPVSKVGSIIGRKGELVKKMCDETRARIRILEGPLGITDRI 99

Query: 192  VLISGKEEPEAQISPAMNAVLRVFKRINGLXXXXXXXXXXXXXX-------CSIRLLAAS 350
            VLISGKEEPEA +SPAM+AVLRVFKR++GL                     CSIRLL AS
Sbjct: 100  VLISGKEEPEAPLSPAMDAVLRVFKRVSGLSPGEGDNTGSAAAAAAAGSAFCSIRLLVAS 159

Query: 351  SQAINLIGKQGSQIKAIQESSGASVRVLSGDEVPHYATSDERVVEIQGESLKVLKALEAV 530
            SQAINLIGKQGS IK+IQE++G  VRV++ D++P YATSDER+VEI GE++KV KALEAV
Sbjct: 160  SQAINLIGKQGSIIKSIQENTGVVVRVMAEDDIPTYATSDERIVEIHGEAMKVFKALEAV 219

Query: 531  IGHLRKFLVDHSIIPLFEKVNNPTVSQERPAETWADKAQSLVQTASQVTSQAGITSDYPL 710
            IGHLRKFLVDHS+IP+FEK  N T+S ERPA+  AD AQ  + +A   +S  GI SDY L
Sbjct: 220  IGHLRKFLVDHSVIPIFEKTYNATISLERPADACADNAQPSLHSAPAFSS--GIISDYSL 277

Query: 711  SIKRDSLFLDRDTQLESQMHHSSLSLYGQDPGFPGLRTSGLSRASAAIISQITQTMQIPL 890
            S+KRD    + +T  E ++     SLYG DPG  GLR++GL RA+A I++Q+TQTMQ+PL
Sbjct: 278  SLKRDPSIYEHETHFEHKISQPGFSLYG-DPGLVGLRSTGLGRATAPIVTQVTQTMQVPL 336

Query: 891  AYAEDXXXXXXXXXXXXRRTSGAILTVQESRGLPDEITVEIKGTTSQVQTAQQLIQDFLA 1070
            +YAED            RRTSGAIL++QESRGLPDEITVEIKGT+SQVQ AQQLIQ+F++
Sbjct: 337  SYAEDIIGVAGSNIAYIRRTSGAILSIQESRGLPDEITVEIKGTSSQVQMAQQLIQEFIS 396

Query: 1071 GHKDPVSSSYGKMDTGLRSYSQLGNTPYSSSSLAT 1175
             HK+P  + YGK+D GL +YSQ+  + Y SSS  +
Sbjct: 397  NHKEPTPNMYGKIDVGLNAYSQIAESGYPSSSFTS 431