BLASTX nr result
ID: Coptis23_contig00005079
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00005079
(1387 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002888408.1| hypothetical protein ARALYDRAFT_894096 [Arab... 117 6e-65
ref|XP_004140878.1| PREDICTED: probable E3 ubiquitin-protein lig... 122 2e-56
ref|XP_004172014.1| PREDICTED: probable E3 ubiquitin-protein lig... 122 2e-56
ref|XP_002268068.2| PREDICTED: probable E3 ubiquitin-protein lig... 123 6e-56
emb|CAN83309.1| hypothetical protein VITISV_023021 [Vitis vinifera] 123 6e-56
>ref|XP_002888408.1| hypothetical protein ARALYDRAFT_894096 [Arabidopsis lyrata subsp.
lyrata] gi|297334249|gb|EFH64667.1| hypothetical protein
ARALYDRAFT_894096 [Arabidopsis lyrata subsp. lyrata]
Length = 567
Score = 117 bits (294), Expect(4) = 6e-65
Identities = 53/84 (63%), Positives = 60/84 (71%), Gaps = 2/84 (2%)
Frame = +2
Query: 599 GRQNYDVSCNCTHSFCWNCTEDAHSPVDCDTVGKWIFKNKDEFGNMVWKLANTKACMYCP 778
G NYDV+C C +SFCWNC E+AH PVDCDTV KW+ KN E NM W LAN+K CP
Sbjct: 231 GSGNYDVNCRCCYSFCWNCAEEAHRPVDCDTVSKWVLKNSAESENMNWILANSKP---CP 287
Query: 779 KCKRPIEKNQGNMLMTCI--CNFK 844
KCKRPIEKNQG M +TC C F+
Sbjct: 288 KCKRPIEKNQGCMHITCTPPCKFE 311
Score = 114 bits (286), Expect(4) = 6e-65
Identities = 54/99 (54%), Positives = 67/99 (67%)
Frame = +3
Query: 843 RDLAKRLSDRYIHYYVRWAANQLSRQKAITDLQKMKGKSFEKLVYTQCDPIKKKVHTMHV 1022
R++AK +RY HYY RWA NQ SRQKA+ DL+KM+ EKL QC P
Sbjct: 352 REMAKNSLERYTHYYERWATNQSSRQKALADLEKMQTDDIEKLSDIQCQP---------- 401
Query: 1023 EAELRFTTEAWLQIIECRRVLKWTYAYGYYLPELSMNKR 1139
E++L+F EAWLQI+ECRRVLKWTYAYG+Y+P+ KR
Sbjct: 402 ESQLKFIIEAWLQIVECRRVLKWTYAYGFYIPDHEHGKR 440
Score = 57.4 bits (137), Expect(4) = 6e-65
Identities = 37/88 (42%), Positives = 42/88 (47%)
Frame = +2
Query: 1124 EHEQKKRQFFEFLQEQAVF*VPXXXXXXXXXXXXXXXXXXXXXXXXEFYLERLHQCAEKE 1303
+HE KR FFE+LQ +A E LERLHQCAEKE
Sbjct: 434 DHEHGKRVFFEYLQGEA-----------------------------ESGLERLHQCAEKE 464
Query: 1304 LPFYLHGYDPPGYFNEFRTKLCELTSMT 1387
L Y+ P FNEFRTKL LTS+T
Sbjct: 465 LQPYIDAKGPSEDFNEFRTKLAGLTSVT 492
Score = 27.7 bits (60), Expect(4) = 6e-65
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Frame = +1
Query: 505 YCSYY--GYKVSSSMMKWCAAPSCYSAIIFFV 594
Y SY+ Y + KWC AP C A+ F V
Sbjct: 199 YTSYFVRSYVEDNRKTKWCPAPGCDYAVNFVV 230
>ref|XP_004140878.1| PREDICTED: probable E3 ubiquitin-protein ligase ARI8-like [Cucumis
sativus]
Length = 591
Score = 122 bits (306), Expect(3) = 2e-56
Identities = 64/116 (55%), Positives = 74/116 (63%)
Frame = +3
Query: 843 RDLAKRLSDRYIHYYVRWAANQLSRQKAITDLQKMKGKSFEKLVYTQCDPIKKKVHTMHV 1022
R++AK +RY HYY RWA+NQ SRQKAI DL +M+ EKL C P
Sbjct: 364 REMAKNSLERYTHYYERWASNQTSRQKAIADLHQMQNVHIEKLSDIHCTP---------- 413
Query: 1023 EAELRFTTEAWLQIIECRRVLKWTYAYGYYLPELSMNKRRGSFLSSFKNRQFFEFL 1190
E++L+F TEAWLQIIECRRVLKWTYAYGYYLPEL K RQFFE+L
Sbjct: 414 ESQLKFITEAWLQIIECRRVLKWTYAYGYYLPELEHAK-----------RQFFEYL 458
Score = 118 bits (295), Expect(3) = 2e-56
Identities = 56/84 (66%), Positives = 60/84 (71%), Gaps = 2/84 (2%)
Frame = +2
Query: 599 GRQNYDVSCNCTHSFCWNCTEDAHSPVDCDTVGKWIFKNKDEFGNMVWKLANTKACMYCP 778
G NYDVSC CT+SFCW CTE+AH PVDC TV KWI KN E NM W LAN+K CP
Sbjct: 243 GNGNYDVSCFCTYSFCWKCTEEAHRPVDCATVEKWILKNSAESENMNWILANSKP---CP 299
Query: 779 KCKRPIEKNQGNMLMTCI--CNFK 844
KCKRPIEKNQG M MTC C F+
Sbjct: 300 KCKRPIEKNQGCMHMTCTPPCKFE 323
Score = 27.7 bits (60), Expect(3) = 2e-56
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +1
Query: 523 YKVSSSMMKWCAAPSCYSAIIF 588
Y + KWC AP C +A++F
Sbjct: 219 YVEDNKKTKWCPAPGCENAVLF 240
>ref|XP_004172014.1| PREDICTED: probable E3 ubiquitin-protein ligase ARI8-like [Cucumis
sativus]
Length = 442
Score = 122 bits (306), Expect(3) = 2e-56
Identities = 64/116 (55%), Positives = 74/116 (63%)
Frame = +3
Query: 843 RDLAKRLSDRYIHYYVRWAANQLSRQKAITDLQKMKGKSFEKLVYTQCDPIKKKVHTMHV 1022
R++AK +RY HYY RWA+NQ SRQKAI DL +M+ EKL C P
Sbjct: 215 REMAKNSLERYTHYYERWASNQTSRQKAIADLHQMQNVHIEKLSDIHCTP---------- 264
Query: 1023 EAELRFTTEAWLQIIECRRVLKWTYAYGYYLPELSMNKRRGSFLSSFKNRQFFEFL 1190
E++L+F TEAWLQIIECRRVLKWTYAYGYYLPEL K RQFFE+L
Sbjct: 265 ESQLKFITEAWLQIIECRRVLKWTYAYGYYLPELEHAK-----------RQFFEYL 309
Score = 118 bits (295), Expect(3) = 2e-56
Identities = 56/84 (66%), Positives = 60/84 (71%), Gaps = 2/84 (2%)
Frame = +2
Query: 599 GRQNYDVSCNCTHSFCWNCTEDAHSPVDCDTVGKWIFKNKDEFGNMVWKLANTKACMYCP 778
G NYDVSC CT+SFCW CTE+AH PVDC TV KWI KN E NM W LAN+K CP
Sbjct: 94 GNGNYDVSCFCTYSFCWKCTEEAHRPVDCATVEKWILKNSAESENMNWILANSKP---CP 150
Query: 779 KCKRPIEKNQGNMLMTCI--CNFK 844
KCKRPIEKNQG M MTC C F+
Sbjct: 151 KCKRPIEKNQGCMHMTCTPPCKFE 174
Score = 27.7 bits (60), Expect(3) = 2e-56
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +1
Query: 523 YKVSSSMMKWCAAPSCYSAIIF 588
Y + KWC AP C +A++F
Sbjct: 70 YVEDNKKTKWCPAPGCENAVLF 91
>ref|XP_002268068.2| PREDICTED: probable E3 ubiquitin-protein ligase ARI8-like [Vitis
vinifera]
Length = 652
Score = 123 bits (309), Expect(3) = 6e-56
Identities = 64/116 (55%), Positives = 75/116 (64%)
Frame = +3
Query: 843 RDLAKRLSDRYIHYYVRWAANQLSRQKAITDLQKMKGKSFEKLVYTQCDPIKKKVHTMHV 1022
RD+AK +RY HYY RWA NQ SRQKA+ DLQ+M+ + EKL QC P
Sbjct: 424 RDMAKNSLERYTHYYERWATNQSSRQKALADLQQMQTVNIEKLSDKQCQP---------- 473
Query: 1023 EAELRFTTEAWLQIIECRRVLKWTYAYGYYLPELSMNKRRGSFLSSFKNRQFFEFL 1190
E++L+F TEAWLQI+ECRRVLKWTYAYGYYLPE K RQFFE+L
Sbjct: 474 ESQLKFITEAWLQIVECRRVLKWTYAYGYYLPEHEHAK-----------RQFFEYL 518
Score = 117 bits (293), Expect(3) = 6e-56
Identities = 54/84 (64%), Positives = 61/84 (72%), Gaps = 2/84 (2%)
Frame = +2
Query: 599 GRQNYDVSCNCTHSFCWNCTEDAHSPVDCDTVGKWIFKNKDEFGNMVWKLANTKACMYCP 778
G +YDVSC C++SFCWNCTE+AH PVDC TV KWI KN E NM W LAN+K CP
Sbjct: 303 GSGSYDVSCRCSYSFCWNCTEEAHRPVDCGTVAKWILKNSAESENMNWILANSKP---CP 359
Query: 779 KCKRPIEKNQGNMLMTCI--CNFK 844
KCKRPIEKNQG M +TC C F+
Sbjct: 360 KCKRPIEKNQGCMHITCTPPCKFE 383
Score = 25.8 bits (55), Expect(3) = 6e-56
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Frame = +1
Query: 505 YCSYY--GYKVSSSMMKWCAAPSCYSAIIFFV 594
Y Y+ Y + KWC AP C A+ F V
Sbjct: 271 YSRYFLRSYIEDNRKTKWCPAPGCDYAVDFIV 302
Score = 62.8 bits (151), Expect = 2e-07
Identities = 40/88 (45%), Positives = 43/88 (48%)
Frame = +2
Query: 1124 EHEQKKRQFFEFLQEQAVF*VPXXXXXXXXXXXXXXXXXXXXXXXXEFYLERLHQCAEKE 1303
EHE KRQFFE+LQ +A E LERLHQCAEKE
Sbjct: 506 EHEHAKRQFFEYLQGEA-----------------------------ESGLERLHQCAEKE 536
Query: 1304 LPFYLHGYDPPGYFNEFRTKLCELTSMT 1387
L YL P FNEFRTKL LTS+T
Sbjct: 537 LQTYLDADGPSKDFNEFRTKLAGLTSVT 564
>emb|CAN83309.1| hypothetical protein VITISV_023021 [Vitis vinifera]
Length = 588
Score = 123 bits (309), Expect(3) = 6e-56
Identities = 64/116 (55%), Positives = 75/116 (64%)
Frame = +3
Query: 843 RDLAKRLSDRYIHYYVRWAANQLSRQKAITDLQKMKGKSFEKLVYTQCDPIKKKVHTMHV 1022
RD+AK +RY HYY RWA NQ SRQKA+ DLQ+M+ + EKL QC P
Sbjct: 360 RDMAKNSLERYTHYYERWATNQSSRQKALADLQQMQTVNIEKLSDKQCQP---------- 409
Query: 1023 EAELRFTTEAWLQIIECRRVLKWTYAYGYYLPELSMNKRRGSFLSSFKNRQFFEFL 1190
E++L+F TEAWLQI+ECRRVLKWTYAYGYYLPE K RQFFE+L
Sbjct: 410 ESQLKFITEAWLQIVECRRVLKWTYAYGYYLPEHEHAK-----------RQFFEYL 454
Score = 117 bits (293), Expect(3) = 6e-56
Identities = 54/84 (64%), Positives = 61/84 (72%), Gaps = 2/84 (2%)
Frame = +2
Query: 599 GRQNYDVSCNCTHSFCWNCTEDAHSPVDCDTVGKWIFKNKDEFGNMVWKLANTKACMYCP 778
G +YDVSC C++SFCWNCTE+AH PVDC TV KWI KN E NM W LAN+K CP
Sbjct: 239 GSGSYDVSCRCSYSFCWNCTEEAHRPVDCGTVAKWILKNSAESENMNWILANSKP---CP 295
Query: 779 KCKRPIEKNQGNMLMTCI--CNFK 844
KCKRPIEKNQG M +TC C F+
Sbjct: 296 KCKRPIEKNQGCMHITCTPPCKFE 319
Score = 25.8 bits (55), Expect(3) = 6e-56
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Frame = +1
Query: 505 YCSYY--GYKVSSSMMKWCAAPSCYSAIIFFV 594
Y Y+ Y + KWC AP C A+ F V
Sbjct: 207 YSRYFLRSYIEDNRKTKWCPAPGCDYAVDFIV 238
Score = 62.8 bits (151), Expect = 2e-07
Identities = 40/88 (45%), Positives = 43/88 (48%)
Frame = +2
Query: 1124 EHEQKKRQFFEFLQEQAVF*VPXXXXXXXXXXXXXXXXXXXXXXXXEFYLERLHQCAEKE 1303
EHE KRQFFE+LQ +A E LERLHQCAEKE
Sbjct: 442 EHEHAKRQFFEYLQGEA-----------------------------ESGLERLHQCAEKE 472
Query: 1304 LPFYLHGYDPPGYFNEFRTKLCELTSMT 1387
L YL P FNEFRTKL LTS+T
Sbjct: 473 LQTYLDADGPSKDFNEFRTKLAGLTSVT 500