BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00005071
         (904 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002271632.1| PREDICTED: 40S ribosomal protein S6 isoform ...   340   4e-91
ref|XP_002273865.1| PREDICTED: 40S ribosomal protein S6 isoform ...   338   1e-90
ref|XP_002285752.1| PREDICTED: 40S ribosomal protein S6 [Vitis v...   336   5e-90
ref|XP_002309965.1| predicted protein [Populus trichocarpa] gi|2...   335   7e-90
gb|ACF06626.1| S6 ribosomal protein [Elaeis guineensis]               335   9e-90

>ref|XP_002271632.1| PREDICTED: 40S ribosomal protein S6 isoform 1 [Vitis vinifera]
           gi|296087487|emb|CBI34076.3| unnamed protein product
           [Vitis vinifera]
          Length = 249

 Score =  340 bits (871), Expect = 4e-91
 Identities = 179/227 (78%), Positives = 186/227 (81%)
 Frame = -1

Query: 904 KLRAFYDKRISQEVSGDALGEEFRSYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTP 725
           KLRAFYDKRISQEV+GDALGEEF+ YVFKIMGGCDKQGFPMKQGVLTPGRV LLLHRGTP
Sbjct: 23  KLRAFYDKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVSLLLHRGTP 82

Query: 724 CFXXXXXXXXXXXXXXXXGCIVSQDLSVLNLVIVKKGESDLPGLTDIEMPRMRGPKRASK 545
           CF                GCIVSQDLSVLNLVIVKKGESDLPGLTD E PRMRGPKRASK
Sbjct: 83  CFRGYGRRNGERRRKAVRGCIVSQDLSVLNLVIVKKGESDLPGLTDTEKPRMRGPKRASK 142

Query: 544 IRRLFNLSKEDDVRKYVNTYRRTFTNKAGKKCSKAPKIQRLVTPLTLQRXXXXXXXXXXX 365
           IR+LFNLSKEDDVRKYVNTYRRTFT K+GKKCSKAPKIQRLVTPLTLQR           
Sbjct: 143 IRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKCSKAPKIQRLVTPLTLQRKRARIAEKKKR 202

Query: 364 XXXXXXXXAEFQKLLNTRLKEQRERRSESIAKKRSRLSAASKPSVAA 224
                   AE+QKLL TRLKEQRERRSES+AK+RSRLSAASKPSVAA
Sbjct: 203 IAKAKSEAAEYQKLLATRLKEQRERRSESLAKRRSRLSAASKPSVAA 249


>ref|XP_002273865.1| PREDICTED: 40S ribosomal protein S6 isoform 1 [Vitis vinifera]
           gi|297741825|emb|CBI33138.3| unnamed protein product
           [Vitis vinifera]
          Length = 249

 Score =  338 bits (866), Expect = 1e-90
 Identities = 176/227 (77%), Positives = 186/227 (81%)
 Frame = -1

Query: 904 KLRAFYDKRISQEVSGDALGEEFRSYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTP 725
           KLRAF+DKRISQEVSGDALGEEF+ YVFKIMGGCDKQGFPMKQGVLTPGRV+LLLHRGTP
Sbjct: 23  KLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVQLLLHRGTP 82

Query: 724 CFXXXXXXXXXXXXXXXXGCIVSQDLSVLNLVIVKKGESDLPGLTDIEMPRMRGPKRASK 545
           CF                GCIVSQDLSVLNLVIVKKGE +LPGLTD+E PRMRGPKRASK
Sbjct: 83  CFRGYGRRNGERRRKAVRGCIVSQDLSVLNLVIVKKGEGELPGLTDVEKPRMRGPKRASK 142

Query: 544 IRRLFNLSKEDDVRKYVNTYRRTFTNKAGKKCSKAPKIQRLVTPLTLQRXXXXXXXXXXX 365
           IR+LFNLSKEDDVRKYVNTYRRTFT K+GKKCSKAPKIQRLVTPLTLQR           
Sbjct: 143 IRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKCSKAPKIQRLVTPLTLQRKRARIAEKKKR 202

Query: 364 XXXXXXXXAEFQKLLNTRLKEQRERRSESIAKKRSRLSAASKPSVAA 224
                   AE+QKLL TRLKEQRERRSES+AKKRSRLSAASKPS+ A
Sbjct: 203 IAKAKSEAAEYQKLLATRLKEQRERRSESLAKKRSRLSAASKPSIVA 249


>ref|XP_002285752.1| PREDICTED: 40S ribosomal protein S6 [Vitis vinifera]
           gi|302141988|emb|CBI19191.3| unnamed protein product
           [Vitis vinifera]
          Length = 249

 Score =  336 bits (861), Expect = 5e-90
 Identities = 177/227 (77%), Positives = 185/227 (81%)
 Frame = -1

Query: 904 KLRAFYDKRISQEVSGDALGEEFRSYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTP 725
           KLRAF+DKRISQEVSGDALGEEF  YVFKIMGGCDKQGFPMKQGVLTPGRV LLLHRGTP
Sbjct: 23  KLRAFFDKRISQEVSGDALGEEFNGYVFKIMGGCDKQGFPMKQGVLTPGRVSLLLHRGTP 82

Query: 724 CFXXXXXXXXXXXXXXXXGCIVSQDLSVLNLVIVKKGESDLPGLTDIEMPRMRGPKRASK 545
           CF                GCIVSQDLSVLNLVIVKKGESDLPGLTD E PRMRGPKRASK
Sbjct: 83  CFRGYGRRNGERRRKAVRGCIVSQDLSVLNLVIVKKGESDLPGLTDTEKPRMRGPKRASK 142

Query: 544 IRRLFNLSKEDDVRKYVNTYRRTFTNKAGKKCSKAPKIQRLVTPLTLQRXXXXXXXXXXX 365
           IR+LFNLSK+DDVRKYVNTYRR+FT K+GKKCSKAPKIQRLVTPLTLQR           
Sbjct: 143 IRKLFNLSKDDDVRKYVNTYRRSFTTKSGKKCSKAPKIQRLVTPLTLQRKRARIAEKKKR 202

Query: 364 XXXXXXXXAEFQKLLNTRLKEQRERRSESIAKKRSRLSAASKPSVAA 224
                   AE+QKLL TRLKEQRERRSES+AK+RSRLSAASKPSVAA
Sbjct: 203 IAKAKSEAAEYQKLLATRLKEQRERRSESLAKRRSRLSAASKPSVAA 249


>ref|XP_002309965.1| predicted protein [Populus trichocarpa] gi|222852868|gb|EEE90415.1|
           predicted protein [Populus trichocarpa]
          Length = 249

 Score =  335 bits (860), Expect = 7e-90
 Identities = 177/227 (77%), Positives = 184/227 (81%)
 Frame = -1

Query: 904 KLRAFYDKRISQEVSGDALGEEFRSYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTP 725
           KLRAF+DKRISQEVSGDALGEEF  YVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTP
Sbjct: 23  KLRAFFDKRISQEVSGDALGEEFNGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTP 82

Query: 724 CFXXXXXXXXXXXXXXXXGCIVSQDLSVLNLVIVKKGESDLPGLTDIEMPRMRGPKRASK 545
           CF                GCIVSQDLSVLNLVIVKKGE+DLPGLTD+E PRMRGPKRASK
Sbjct: 83  CFRGYGRRNGERRRKSVRGCIVSQDLSVLNLVIVKKGENDLPGLTDVEKPRMRGPKRASK 142

Query: 544 IRRLFNLSKEDDVRKYVNTYRRTFTNKAGKKCSKAPKIQRLVTPLTLQRXXXXXXXXXXX 365
           IR+LFNLSKEDDVRKYVNTYRRTFT K+GKK SKAPKIQRLVTPLTLQR           
Sbjct: 143 IRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLQRKRARISDKKKR 202

Query: 364 XXXXXXXXAEFQKLLNTRLKEQRERRSESIAKKRSRLSAASKPSVAA 224
                   AE+QKLL TRLKEQRERRSES+AKKRSRLS ASKPSV A
Sbjct: 203 ITKAKAEAAEYQKLLATRLKEQRERRSESLAKKRSRLSVASKPSVVA 249


>gb|ACF06626.1| S6 ribosomal protein [Elaeis guineensis]
          Length = 249

 Score =  335 bits (859), Expect = 9e-90
 Identities = 177/227 (77%), Positives = 186/227 (81%)
 Frame = -1

Query: 904 KLRAFYDKRISQEVSGDALGEEFRSYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTP 725
           KLRAF+DKRISQEVSGDALGEEF+ YVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTP
Sbjct: 23  KLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTP 82

Query: 724 CFXXXXXXXXXXXXXXXXGCIVSQDLSVLNLVIVKKGESDLPGLTDIEMPRMRGPKRASK 545
           CF                GCIVS DLSVLNLVIVKKGE+DLPGLTDIE PRMRGPKRASK
Sbjct: 83  CFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGENDLPGLTDIEKPRMRGPKRASK 142

Query: 544 IRRLFNLSKEDDVRKYVNTYRRTFTNKAGKKCSKAPKIQRLVTPLTLQRXXXXXXXXXXX 365
           IR+LFNLSKEDDVRKYVNTYRRTFT K+GKKCSKAPKIQRLVTPLTLQR           
Sbjct: 143 IRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKCSKAPKIQRLVTPLTLQRKRARIAEKKKR 202

Query: 364 XXXXXXXXAEFQKLLNTRLKEQRERRSESIAKKRSRLSAASKPSVAA 224
                   AE+QKLL TRLKEQRERRSES+AK+RS+LSAASK SVAA
Sbjct: 203 IAKAKAEAAEYQKLLATRLKEQRERRSESLAKRRSKLSAASKLSVAA 249