BLASTX nr result

ID: Coptis23_contig00005048 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00005048
         (1034 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002280175.1| PREDICTED: uncharacterized protein LOC100251...   189   7e-46
emb|CAN67334.1| hypothetical protein VITISV_024486 [Vitis vinifera]   186   8e-45
ref|XP_002322518.1| predicted protein [Populus trichocarpa] gi|2...   180   6e-43
ref|XP_002267894.2| PREDICTED: uncharacterized protein LOC100246...   177   3e-42
emb|CAN65006.1| hypothetical protein VITISV_020872 [Vitis vinifera]   177   3e-42

>ref|XP_002280175.1| PREDICTED: uncharacterized protein LOC100251077 [Vitis vinifera]
          Length = 386

 Score =  189 bits (481), Expect = 7e-46
 Identities = 101/187 (54%), Positives = 132/187 (70%), Gaps = 2/187 (1%)
 Frame = +1

Query: 478  MAVFFRSVLLFVCLILTTLVLSTNAQTCRSYTF-SNRAFASCTDLQVLNSFLHWTYTPSN 654
            MA  F+S+ L +CL+ + L   ++AQ+C S  F +N+ F+SC DL VL+S +HW Y PS+
Sbjct: 1    MANLFKSLQL-LCLLFSLLTSLSHAQSCTSGNFPNNQIFSSCYDLPVLDSSIHWNYDPSS 59

Query: 655  RTVNLAYRHTGISPSSWIAWAINPTGRGMVGSQALVAFQ-TGGQMNAYTSQVTSTQTVLP 831
            + V LAYR TG++PS+WI+WAINPT RGMVGSQALVAFQ T G M  YTS +TS QT L 
Sbjct: 60   QLVQLAYRKTGVAPSTWISWAINPTTRGMVGSQALVAFQGTDGSMTVYTSPITSYQTQLQ 119

Query: 832  RGNLTFQVPTIIAEFANNNREMTIFATLVLPSGDTTVNQVWQQGPMNGNTPQIHPLTGAN 1011
            +G+L+F V  + A     N +M IFAT+ LP   T VN VWQ+GP+ GN P IH L+GAN
Sbjct: 120  QGSLSFPVFDLSA--MQENCDMIIFATIQLPGNTTMVNHVWQEGPVYGNVPGIHALSGAN 177

Query: 1012 SRSTGTI 1032
             +S G+I
Sbjct: 178  MQSFGSI 184


>emb|CAN67334.1| hypothetical protein VITISV_024486 [Vitis vinifera]
          Length = 386

 Score =  186 bits (472), Expect = 8e-45
 Identities = 100/187 (53%), Positives = 128/187 (68%), Gaps = 2/187 (1%)
 Frame = +1

Query: 478  MAVFFRSVLLFVCLILTTLVLSTNAQTCRSYTFSNRA-FASCTDLQVLNSFLHWTYTPSN 654
            MA  F+S+ L +CL+ + L   ++ Q+C S  F N   F+SC DL VL+S +HW Y PS+
Sbjct: 1    MANLFKSLQL-LCLLFSLLTSLSHVQSCTSGNFPNNLIFSSCYDLPVLDSSIHWNYDPSS 59

Query: 655  RTVNLAYRHTGISPSSWIAWAINPTGRGMVGSQALVAFQ-TGGQMNAYTSQVTSTQTVLP 831
            + V LAYR TG+ PS+WI+WAINPT RGMVGSQALVAFQ T G M  YTS +TS QT L 
Sbjct: 60   QLVQLAYRKTGVXPSTWISWAINPTTRGMVGSQALVAFQGTDGSMTVYTSPITSYQTQLQ 119

Query: 832  RGNLTFQVPTIIAEFANNNREMTIFATLVLPSGDTTVNQVWQQGPMNGNTPQIHPLTGAN 1011
            +G+L+F V  + A     N +M IFAT+ LP   T VN VWQ+GP+ GN P IH L+GAN
Sbjct: 120  QGSLSFPVFDLSA--MQENCDMIIFATIQLPGNTTMVNHVWQEGPVYGNVPGIHALSGAN 177

Query: 1012 SRSTGTI 1032
             +S G+I
Sbjct: 178  MQSFGSI 184


>ref|XP_002322518.1| predicted protein [Populus trichocarpa] gi|222867148|gb|EEF04279.1|
            predicted protein [Populus trichocarpa]
          Length = 383

 Score =  180 bits (456), Expect = 6e-43
 Identities = 89/170 (52%), Positives = 117/170 (68%), Gaps = 2/170 (1%)
 Frame = +1

Query: 529  TLVLSTNAQTCRSYTFS-NRAFASCTDLQVLNSFLHWTYTPSNRTVNLAYRHTGISPSSW 705
            +++ S+ AQ+C+SY  S N+ F +C DL  LNS+LHW Y  S+  + +AYRHTGI+ S W
Sbjct: 2    SMIFSSTAQSCKSYALSSNKTFRACNDLPYLNSYLHWNYDSSSNKLQIAYRHTGITSSRW 61

Query: 706  IAWAINPTGRGMVGSQALVAF-QTGGQMNAYTSQVTSTQTVLPRGNLTFQVPTIIAEFAN 882
            +AWAINPT  GM GSQALVA+ QT G M AYTS ++S QT L  G L+F V  + A  AN
Sbjct: 62   VAWAINPTSTGMAGSQALVAYQQTDGTMRAYTSPISSYQTSLQEGKLSFDVSDLSATLAN 121

Query: 883  NNREMTIFATLVLPSGDTTVNQVWQQGPMNGNTPQIHPLTGANSRSTGTI 1032
            N  E+ IFAT+ L +  TTVN VWQ G ++GN  Q+H  +GAN +S GT+
Sbjct: 122  N--EIIIFATIGLSNTSTTVNHVWQDGAVSGNATQVHATSGANVQSMGTL 169


>ref|XP_002267894.2| PREDICTED: uncharacterized protein LOC100246969 [Vitis vinifera]
          Length = 396

 Score =  177 bits (450), Expect = 3e-42
 Identities = 94/181 (51%), Positives = 123/181 (67%), Gaps = 5/181 (2%)
 Frame = +1

Query: 505  LFV-CLILTTLVLSTNAQTCRSYTFS-NRAFASCTDLQVLNSFLHWTYTPSNRTVNLAYR 678
            LFV   IL +++L+++AQ+C  Y FS NR F+SC DL  LNSFLHW +  S+  V +AYR
Sbjct: 7    LFVSACILMSMLLTSSAQSCSRYAFSSNRVFSSCNDLPYLNSFLHWNFNSSSSGVQIAYR 66

Query: 679  HTGISPSSWIAWAINPTGRGMVGSQALVAFQT-GGQMNAYTSQVTSTQTVLPRGNLTFQV 855
            HTG++ S W+AWAIN    GMVGSQALVA++   G + AYTS V S QT L   NL+F V
Sbjct: 67   HTGVTSSMWVAWAINLDSTGMVGSQALVAYRNPDGTIKAYTSSVDSYQTALSESNLSFPV 126

Query: 856  PTIIAEFANNNREMTIFATLVLPSGDTTVNQVWQQGPMNG--NTPQIHPLTGANSRSTGT 1029
              + A ++N+  EM I+ATL LP   TTVNQVWQ GP++   NTP +H  +G N +S GT
Sbjct: 127  SDLSATYSNS--EMIIYATLELPHNSTTVNQVWQHGPLSATTNTPGVHAFSGPNVQSMGT 184

Query: 1030 I 1032
            +
Sbjct: 185  L 185


>emb|CAN65006.1| hypothetical protein VITISV_020872 [Vitis vinifera]
          Length = 396

 Score =  177 bits (450), Expect = 3e-42
 Identities = 94/181 (51%), Positives = 123/181 (67%), Gaps = 5/181 (2%)
 Frame = +1

Query: 505  LFV-CLILTTLVLSTNAQTCRSYTFS-NRAFASCTDLQVLNSFLHWTYTPSNRTVNLAYR 678
            LFV   IL +++L+++AQ+C  Y FS NR F+SC DL  LNSFLHW +  S+  V +AYR
Sbjct: 7    LFVSACILMSMLLTSSAQSCSRYAFSSNRVFSSCNDLPYLNSFLHWNFNSSSSGVQIAYR 66

Query: 679  HTGISPSSWIAWAINPTGRGMVGSQALVAFQT-GGQMNAYTSQVTSTQTVLPRGNLTFQV 855
            HTG++ S W+AWAIN    GMVGSQALVA++   G + AYTS V S QT L   NL+F V
Sbjct: 67   HTGVTSSMWVAWAINLDSTGMVGSQALVAYRNPDGTIKAYTSSVDSYQTALSESNLSFPV 126

Query: 856  PTIIAEFANNNREMTIFATLVLPSGDTTVNQVWQQGPMNG--NTPQIHPLTGANSRSTGT 1029
              + A ++N+  EM I+ATL LP   TTVNQVWQ GP++   NTP +H  +G N +S GT
Sbjct: 127  SDLSATYSNS--EMIIYATLELPHNSTTVNQVWQHGPLSATTNTPGVHAFSGPNVQSMGT 184

Query: 1030 I 1032
            +
Sbjct: 185  L 185


Top