BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00005035
         (1532 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002263640.1| PREDICTED: DEAD-box ATP-dependent RNA helica...   760   0.0  
ref|XP_002307523.1| predicted protein [Populus trichocarpa] gi|2...   733   0.0  
ref|XP_004163791.1| PREDICTED: DEAD-box ATP-dependent RNA helica...   724   0.0  
ref|XP_004139692.1| PREDICTED: DEAD-box ATP-dependent RNA helica...   724   0.0  
ref|XP_002455046.1| hypothetical protein SORBIDRAFT_03g003520 [S...   708   0.0  

>ref|XP_002263640.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 39 [Vitis vinifera]
          Length = 635

 Score =  760 bits (1963), Expect = 0.0
 Identities = 394/498 (79%), Positives = 438/498 (87%), Gaps = 2/498 (0%)
 Frame = -2

Query: 1489 LEPMRHSILLEKLRARHLKDSSKIPLNKAPSVGSVEKQAGDDKLSKSRKVGNTKVFTSFR 1310
            L+PMRHSILLEKLR RHLKDS+K P  ++P + +  K+ G+    KS+K    K+ +SF 
Sbjct: 66   LQPMRHSILLEKLRFRHLKDSAKSPQTRSPPLSTGGKE-GEPGSMKSQK--KPKMVSSFE 122

Query: 1309 ELGLDEEVMGAVDELGISVPTEIQGVGIPVVLEGKSVVLGSHTGSGKTLAYMLPLVQLLR 1130
            ELGL EEVM AV E GISVPTEIQ +G+P VLEG+SVVLGSHTGSGKTLAYMLPLVQLLR
Sbjct: 123  ELGLSEEVMAAVRETGISVPTEIQCIGVPAVLEGRSVVLGSHTGSGKTLAYMLPLVQLLR 182

Query: 1129 QDEMLHGMLMKPRRPRAVVLCPTRELSEQVFRVSKSISHHARFRSTMVSGGGRLRPQEDS 950
            +DE L G+LMKPRRPRAVVLCPTRELSEQVFRV+KSISHHARFRSTMVSGGGRLRPQEDS
Sbjct: 183  RDEALSGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDS 242

Query: 949  LNVPIDMVVGTPGRVLQHIEEGNIVYGDIKYVVLDEADTMFDRGFGPDIRKFLGPLKNRA 770
            LN+PIDMVVGTPGRVLQHIEEGN+VYG+IKY+VLDEADTMFDRGFGPDIRKFL PLKNRA
Sbjct: 243  LNIPIDMVVGTPGRVLQHIEEGNMVYGEIKYLVLDEADTMFDRGFGPDIRKFLAPLKNRA 302

Query: 769  LKSDDQGFQTILVTATMTKAVQMLVDEEFEGILHLRTSTLHKKIASARHDFIKLSGAENK 590
             KSDDQGFQT+LVTATMTKAVQ L+DEEF+GI+HLRTSTLHKKIASARHDFIKLSG+ENK
Sbjct: 303  SKSDDQGFQTVLVTATMTKAVQKLIDEEFQGIVHLRTSTLHKKIASARHDFIKLSGSENK 362

Query: 589  LEALLQVLEPSLSKGNRVMVFCNTLNSSRAVDHYLSENQISTVNYHGEVPAEQRVENLKK 410
            LEALLQVLEPSL+KGN+VMVFCNTLNSSRAVDH+L ENQI TVNYHGEVPAEQRVENLKK
Sbjct: 363  LEALLQVLEPSLAKGNKVMVFCNTLNSSRAVDHFLGENQIFTVNYHGEVPAEQRVENLKK 422

Query: 409  FKSEDGDCPTLVCTDLAARGLDLDVDHVIMFDFPSNSIDYLHRTGRTARMGAKGKVTSLV 230
            FK+EDGDCPTLVCTDLAARGLDLDVDHVIMFDFP NSIDYLHRTGRTARMGAKGKVTSLV
Sbjct: 423  FKTEDGDCPTLVCTDLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLV 482

Query: 229  AKKDTSLAARIEEAIRKNESLESLTVDNFRMASDKARVS-LKGKSST-VRASNQKSKSEL 56
            AKKD  LA RIEEAIRKNESLE+LT DN R    +A++S  K K++  V+ S QK+K+++
Sbjct: 483  AKKDLLLATRIEEAIRKNESLEALTADNLRRDVARAKISEQKAKNANLVKVSKQKNKTKV 542

Query: 55   AKPSRGRGKVVAVDTSRR 2
             +  +   K  +  TS R
Sbjct: 543  -ESMKSSSKAASTQTSGR 559


>ref|XP_002307523.1| predicted protein [Populus trichocarpa] gi|222856972|gb|EEE94519.1|
            predicted protein [Populus trichocarpa]
          Length = 573

 Score =  733 bits (1893), Expect = 0.0
 Identities = 380/484 (78%), Positives = 421/484 (86%), Gaps = 8/484 (1%)
 Frame = -2

Query: 1486 EPMRHSILLEKLRARHLKDSSKIPLNKAPS------VGSVEKQAGDDKLSKSRKVGNTKV 1325
            + ++HSILLE+LR RHLK S K  L    +      V  +E +  +D   KS+K    K+
Sbjct: 57   DEVKHSILLERLRLRHLKGSKKPQLTDTQTQTALKPVVLIEGEEEEDGFKKSKK--GKKI 114

Query: 1324 FTSFRELGLDEEVMGAVDELGISVPTEIQGVGIPVVLEGKSVVLGSHTGSGKTLAYMLPL 1145
              SF ELGL EEVMGAV E+GI VPTEIQ +GIP +L+ ++VVLGSHTGSGKTLAYMLPL
Sbjct: 115  AGSFEELGLSEEVMGAVKEMGIEVPTEIQCIGIPAILDSRTVVLGSHTGSGKTLAYMLPL 174

Query: 1144 VQLLRQDEMLHGMLMKPRRPRAVVLCPTRELSEQVFRVSKSISHHARFRSTMVSGGGRLR 965
            VQLLR+DE L G LMKPRRPRAVVLCPTRELSEQVFRV+KSI HHARFRSTMVSGGGR+R
Sbjct: 175  VQLLRRDEALLGRLMKPRRPRAVVLCPTRELSEQVFRVAKSIGHHARFRSTMVSGGGRMR 234

Query: 964  PQEDSLNVPIDMVVGTPGRVLQHIEEGNIVYGDIKYVVLDEADTMFDRGFGPDIRKFLGP 785
            PQEDSLN PIDMVVGTPGRVLQHI++GN+VYGDIKY+VLDEADTMFDRGFGPDI KFLGP
Sbjct: 235  PQEDSLNNPIDMVVGTPGRVLQHIQDGNMVYGDIKYLVLDEADTMFDRGFGPDIHKFLGP 294

Query: 784  LKNRALKSDDQGFQTILVTATMTKAVQMLVDEEFEGILHLRTSTLHKKIASARHDFIKLS 605
            LKNR  KSD QGFQTILVTATMTKAVQ L+DEEF+GI HLRTSTLHKKIASARHDFIKLS
Sbjct: 295  LKNRTSKSDGQGFQTILVTATMTKAVQKLIDEEFQGIEHLRTSTLHKKIASARHDFIKLS 354

Query: 604  GAENKLEALLQVLEPSLSKGNRVMVFCNTLNSSRAVDHYLSENQISTVNYHGEVPAEQRV 425
            G+ENKLEALLQVLEPSL+KGNRVMVFCNTLNSSRA DH+L+ENQISTVNYHGEVPAEQRV
Sbjct: 355  GSENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAADHFLAENQISTVNYHGEVPAEQRV 414

Query: 424  ENLKKFKSEDGDCPTLVCTDLAARGLDLDVDHVIMFDFPSNSIDYLHRTGRTARMGAKGK 245
            ENL KFKS+DGDCPTLVCTDLAARGLDLDVDHVIMFDFP NSIDYLHRTGRTARMGAKGK
Sbjct: 415  ENLNKFKSDDGDCPTLVCTDLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRTARMGAKGK 474

Query: 244  VTSLVAKKDTSLAARIEEAIRKNESLESLTVDNFRMASDKARVS-LKGKSS-TVRASNQK 71
            VTSLVA+KD  LAARIEEA+RKNESLESLTVDN R    +AR++  +GKS+  ++ASNQK
Sbjct: 475  VTSLVARKDQQLAARIEEAMRKNESLESLTVDNVRRDIARARITEQQGKSAKLIKASNQK 534

Query: 70   SKSE 59
            S ++
Sbjct: 535  SNNK 538


>ref|XP_004163791.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 39-like [Cucumis
            sativus]
          Length = 634

 Score =  724 bits (1870), Expect = 0.0
 Identities = 382/496 (77%), Positives = 423/496 (85%), Gaps = 9/496 (1%)
 Frame = -2

Query: 1489 LEPMRHSILLEKLRARHLKDSSKIPLNKAPSVGSVEKQAG--DDKLSKSRKVGNTKVFTS 1316
            +EP++HS LLE+LR RHLK+S+  P  K P+  ++ +  G  +D++ KS K    K+  S
Sbjct: 66   IEPLKHSQLLERLRTRHLKESA--PKTK-PTRNTLSQSVGSAEDEMKKSEKK-KKKLDES 121

Query: 1315 FRELGLDEEVMGAVDELGISVPTEIQGVGIPVVLEGKSVVLGSHTGSGKTLAYMLPLVQL 1136
            F ELGL+EEVMGAV E+GI VP+EIQ +GIP VLEGKSV+LGSHTGSGKTLAY+LPLVQL
Sbjct: 122  FEELGLNEEVMGAVREMGIQVPSEIQCIGIPAVLEGKSVILGSHTGSGKTLAYLLPLVQL 181

Query: 1135 LRQDEMLHGMLMKPRRPRAVVLCPTRELSEQVFRVSKSISHHARFRSTMVSGGGRLRPQE 956
            LR+DE L G LMKPRRPRAVVLCPTRELSEQVFRVSKSISHHARFRSTMVSGGGRLRPQE
Sbjct: 182  LRRDEELFGRLMKPRRPRAVVLCPTRELSEQVFRVSKSISHHARFRSTMVSGGGRLRPQE 241

Query: 955  DSLNVPIDMVVGTPGRVLQHIEEGNIVYGDIKYVVLDEADTMFDRGFGPDIRKFLGPLKN 776
            DSL+ PIDMVVGTPGRVLQHIE GN+VYGDIKY+VLDEADTMFD GFGPDIRKF+GPLK+
Sbjct: 242  DSLSNPIDMVVGTPGRVLQHIEAGNMVYGDIKYLVLDEADTMFDHGFGPDIRKFIGPLKH 301

Query: 775  RALKSDDQGFQTILVTATMTKAVQMLVDEEFEGILHLRTSTLHKKIASARHDFIKLSGAE 596
            RA   DDQGFQTILVTATMTKAVQ L+DEEF+GI+HLRTSTLHKKIASARHDFIKLSG+E
Sbjct: 302  RASSHDDQGFQTILVTATMTKAVQKLIDEEFQGIVHLRTSTLHKKIASARHDFIKLSGSE 361

Query: 595  NKLEALLQVLEPSLSKGNRVMVFCNTLNSSRAVDHYLSENQISTVNYHGEVPAEQRVENL 416
            NKLEALLQVLEPSL+KGNRVMVFCNTLNSSRAVDH+L ENQISTVNYHGEVPA++RVENL
Sbjct: 362  NKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLGENQISTVNYHGEVPAQKRVENL 421

Query: 415  KKFKSEDGDCPTLVCTDLAARGLDLDVDHVIMFDFPSNSIDYLHRTGRTARMGAKGKVTS 236
            KKFKS+D DCPTLVCTDLAARGLDLDVDHVIMFDFPSNSIDYLHRTGRTARMGAKGKVTS
Sbjct: 422  KKFKSDDADCPTLVCTDLAARGLDLDVDHVIMFDFPSNSIDYLHRTGRTARMGAKGKVTS 481

Query: 235  LVAKKDTSLAARIEEAIRKNESLESLTVDNF-------RMASDKARVSLKGKSSTVRASN 77
            LV KKD  LA RIEEAIRKNESLESLT D+        R+   K + +   K+ST R S 
Sbjct: 482  LVGKKDNILATRIEEAIRKNESLESLTADSVWRDVARNRITEHKTKNAKLIKASTGR-SG 540

Query: 76   QKSKSELAKPSRGRGK 29
             KS +   K S    K
Sbjct: 541  AKSATSAPKSSSVHSK 556


>ref|XP_004139692.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 39-like [Cucumis
            sativus]
          Length = 634

 Score =  724 bits (1870), Expect = 0.0
 Identities = 382/496 (77%), Positives = 423/496 (85%), Gaps = 9/496 (1%)
 Frame = -2

Query: 1489 LEPMRHSILLEKLRARHLKDSSKIPLNKAPSVGSVEKQAG--DDKLSKSRKVGNTKVFTS 1316
            +EP++HS LLE+LR RHLK+S+  P  K P+  ++ +  G  +D++ KS K    K+  S
Sbjct: 66   IEPLKHSQLLERLRTRHLKESA--PKTK-PTRNTLSQSVGSAEDEMKKSEKK-KKKLDES 121

Query: 1315 FRELGLDEEVMGAVDELGISVPTEIQGVGIPVVLEGKSVVLGSHTGSGKTLAYMLPLVQL 1136
            F ELGL+EEVMGAV E+GI VP+EIQ +GIP VLEGKSV+LGSHTGSGKTLAY+LPLVQL
Sbjct: 122  FEELGLNEEVMGAVREMGIQVPSEIQCIGIPAVLEGKSVILGSHTGSGKTLAYLLPLVQL 181

Query: 1135 LRQDEMLHGMLMKPRRPRAVVLCPTRELSEQVFRVSKSISHHARFRSTMVSGGGRLRPQE 956
            LR+DE L G LMKPRRPRAVVLCPTRELSEQVFRVSKSISHHARFRSTMVSGGGRLRPQE
Sbjct: 182  LRRDEELFGRLMKPRRPRAVVLCPTRELSEQVFRVSKSISHHARFRSTMVSGGGRLRPQE 241

Query: 955  DSLNVPIDMVVGTPGRVLQHIEEGNIVYGDIKYVVLDEADTMFDRGFGPDIRKFLGPLKN 776
            DSL+ PIDMVVGTPGRVLQHIE GN+VYGDIKY+VLDEADTMFD GFGPDIRKF+GPLK+
Sbjct: 242  DSLSNPIDMVVGTPGRVLQHIEAGNMVYGDIKYLVLDEADTMFDHGFGPDIRKFIGPLKH 301

Query: 775  RALKSDDQGFQTILVTATMTKAVQMLVDEEFEGILHLRTSTLHKKIASARHDFIKLSGAE 596
            RA   DDQGFQTILVTATMTKAVQ L+DEEF+GI+HLRTSTLHKKIASARHDFIKLSG+E
Sbjct: 302  RASSHDDQGFQTILVTATMTKAVQKLIDEEFQGIVHLRTSTLHKKIASARHDFIKLSGSE 361

Query: 595  NKLEALLQVLEPSLSKGNRVMVFCNTLNSSRAVDHYLSENQISTVNYHGEVPAEQRVENL 416
            NKLEALLQVLEPSL+KGNRVMVFCNTLNSSRAVDH+L ENQISTVNYHGEVPA++RVENL
Sbjct: 362  NKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLGENQISTVNYHGEVPAQKRVENL 421

Query: 415  KKFKSEDGDCPTLVCTDLAARGLDLDVDHVIMFDFPSNSIDYLHRTGRTARMGAKGKVTS 236
            KKFKS+D DCPTLVCTDLAARGLDLDVDHVIMFDFPSNSIDYLHRTGRTARMGAKGKVTS
Sbjct: 422  KKFKSDDADCPTLVCTDLAARGLDLDVDHVIMFDFPSNSIDYLHRTGRTARMGAKGKVTS 481

Query: 235  LVAKKDTSLAARIEEAIRKNESLESLTVDNF-------RMASDKARVSLKGKSSTVRASN 77
            LV KKD  LA RIEEAIRKNESLESLT D+        R+   K + +   K+ST R S 
Sbjct: 482  LVGKKDNILATRIEEAIRKNESLESLTADSVWRDVARNRITEHKTKNAKLIKASTGR-SG 540

Query: 76   QKSKSELAKPSRGRGK 29
             KS +   K S    K
Sbjct: 541  AKSATSAPKSSSVHSK 556


>ref|XP_002455046.1| hypothetical protein SORBIDRAFT_03g003520 [Sorghum bicolor]
            gi|241927021|gb|EES00166.1| hypothetical protein
            SORBIDRAFT_03g003520 [Sorghum bicolor]
          Length = 612

 Score =  708 bits (1827), Expect = 0.0
 Identities = 360/501 (71%), Positives = 418/501 (83%), Gaps = 7/501 (1%)
 Frame = -2

Query: 1483 PMRHSILLEKLRARHLKDSSKIPLNKAPSVGSVEKQAGDDKLSKSRKVGNTKVFTSFREL 1304
            P RH +LLE+LR RHLKD+S  P   AP+        G ++ S+  K    +   SF EL
Sbjct: 46   PPRHELLLERLRLRHLKDASSSPGAPAPA------SRGAERSSQQGKGKRVEAAESFEEL 99

Query: 1303 GLDEEVMGAVDELGISVPTEIQGVGIPVVLEGKSVVLGSHTGSGKTLAYMLPLVQLLRQD 1124
            GL EEVM A+ E+GIS PTEIQ VG+P VL G SVVLGSHTGSGKTLAY+LPLVQLLR+D
Sbjct: 100  GLGEEVMAALGEMGISKPTEIQCVGVPAVLAGTSVVLGSHTGSGKTLAYLLPLVQLLRRD 159

Query: 1123 EMLHGMLMKPRRPRAVVLCPTRELSEQVFRVSKSISHHARFRSTMVSGGGRLRPQEDSLN 944
            E + G+ MKPRRPRAVVLCPTREL+EQV+RV+KSISHHARFRSTMVSGG RLRPQEDSLN
Sbjct: 160  EAMLGISMKPRRPRAVVLCPTRELTEQVYRVAKSISHHARFRSTMVSGGTRLRPQEDSLN 219

Query: 943  VPIDMVVGTPGRVLQHIEEGNIVYGDIKYVVLDEADTMFDRGFGPDIRKFLGPLKNRALK 764
            +P+DMVVGTPGR+L HI++GN+VYGDIKY+VLDEADTMFD+GFGPDIRKFL PLKNRA K
Sbjct: 220  MPVDMVVGTPGRILDHIKDGNMVYGDIKYLVLDEADTMFDQGFGPDIRKFLAPLKNRAAK 279

Query: 763  SDDQGFQTILVTATMTKAVQMLVDEEFEGILHLRTSTLHKKIASARHDFIKLSGAENKLE 584
              DQGFQT+LVTATMTKAVQ L+DEEFEGI+HLRTS+  K++++ARHDFIKLSGAENKLE
Sbjct: 280  PGDQGFQTVLVTATMTKAVQKLIDEEFEGIVHLRTSSFQKRVSTARHDFIKLSGAENKLE 339

Query: 583  ALLQVLEPSLSKGNRVMVFCNTLNSSRAVDHYLSENQISTVNYHGEVPAEQRVENLKKFK 404
            ALLQVLEPSL+KGN+VMVFCNTLNSSRAVDH+L+ENQISTVNYHGEVPAE+RVENL KF+
Sbjct: 340  ALLQVLEPSLAKGNKVMVFCNTLNSSRAVDHFLTENQISTVNYHGEVPAEERVENLNKFR 399

Query: 403  SEDGDCPTLVCTDLAARGLDLDVDHVIMFDFPSNSIDYLHRTGRTARMGAKGKVTSLVAK 224
            +E+GDCPTLVCTDLAARGLDLDVDHVIMFDFPSNSIDYLHRTGRTARMGAKGKVTS+VAK
Sbjct: 400  NEEGDCPTLVCTDLAARGLDLDVDHVIMFDFPSNSIDYLHRTGRTARMGAKGKVTSIVAK 459

Query: 223  KDTSLAARIEEAIRKNESLESLTVDNFRMASDKARVSLKGK-------SSTVRASNQKSK 65
            KD +LA RIEEA++KNESLE+LT +N R A+    VS KG+       S+ ++  NQK +
Sbjct: 460  KDVALATRIEEAMKKNESLEALTTNNVRRAASPQSVSTKGRPSRLVKTSNALKVVNQKGR 519

Query: 64   SELAKPSRGRGKVVAVDTSRR 2
              +A  S+         ++RR
Sbjct: 520  RGVALSSKSSRTPKDTTSTRR 540