BLASTX nr result
ID: Coptis23_contig00005022
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00005022
(1504 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003634022.1| PREDICTED: pentatricopeptide repeat-containi... 504 e-140
ref|XP_002528404.1| pentatricopeptide repeat-containing protein,... 459 e-126
ref|XP_004146719.1| PREDICTED: pentatricopeptide repeat-containi... 441 e-121
ref|XP_002869359.1| pentatricopeptide repeat-containing protein ... 418 e-114
ref|NP_567856.1| pentatricopeptide repeat-containing protein [Ar... 409 e-111
>ref|XP_003634022.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30825,
chloroplastic-like [Vitis vinifera]
gi|297745081|emb|CBI38673.3| unnamed protein product
[Vitis vinifera]
Length = 900
Score = 504 bits (1299), Expect = e-140
Identities = 259/466 (55%), Positives = 337/466 (72%), Gaps = 15/466 (3%)
Frame = -3
Query: 1355 KFFTALDIYDTNSSLFIGNP---FTTTTTRLKPITVSRLSTELVDEEDYSVGKENL---- 1197
KF ++D YD+N F NP + R+KPI +SRL E D D + +N+
Sbjct: 5 KFSVSVDTYDSNKFHFSVNPSLPIINSFARVKPINISRLEAESWDTSDSNSVVDNIKTWN 64
Query: 1196 ---GLRNPIVEKN--KRNIWKRFHGVKR-ESKEPF--FRKSGKEQVQEEKRSSFVCNGKL 1041
G N I+E + + +IW+R GVKR ++P FR + EE++S + ++
Sbjct: 65 KDSGSENLILESSNFRNDIWRRVQGVKRVRRRDPNSKFRSIRNDNGHEEQKSVNHFDDEI 124
Query: 1040 SVELENAVGNVGPESSVEQCNIILRQLEQCNDEKTLTFFEWMRSNGKLRENVSAYNFALR 861
V N G +GPE SVE+CN IL+ LE+C+D KT+ FFEWMR NGKL NVSAYN ALR
Sbjct: 125 DV---NEYG-IGPELSVERCNAILKGLERCSDSKTMKFFEWMRENGKLEGNVSAYNLALR 180
Query: 860 VLGRKEDWETAEMLLHELITDSGLALNFQLFNTLIYACYRRGLEKLGTKWFRLMLENAVK 681
VLGR+ DW+ AE ++ E+ DS +NFQ++NTLIYACY++G +LGTKWFRLMLEN V+
Sbjct: 181 VLGRRGDWDAAETMIWEMNGDSDCQVNFQVYNTLIYACYKQGHVELGTKWFRLMLENGVR 240
Query: 680 PNIATFGMLMSLYQKGGNVVEAEFAFHKMRSLKLKCQSAYSAMITIFTRLGLYDKSEEII 501
PN+ATFGM+MSLYQKG NV ++E+AF +MRS + CQSAYSAMITI+TR+ LYDK+EE+I
Sbjct: 241 PNVATFGMVMSLYQKGWNVADSEYAFSQMRSFGITCQSAYSAMITIYTRMSLYDKAEEVI 300
Query: 500 HFMKEDDVVPNSENWLVQINAYSQQGKLEDAERVLMSMQEAGVPPNIVAYNTMITGYGKV 321
F++ED V+ N ENWLV +NAYSQQGKL++AERVL SMQ AG PNIVAYN +ITGYGK
Sbjct: 301 DFIQEDKVILNLENWLVLLNAYSQQGKLQEAERVLFSMQNAGFSPNIVAYNMLITGYGKA 360
Query: 320 SDMDSAERIFQRLQIFGLEPDETTYRTMVEGWGRANHLKNAKWYYQKLKHSGFAPNSSNM 141
S+MD+A+ IF+ L+ GLEPDE+TYR+M+EGWGRA + K A+WYY +LK GF PNSSN+
Sbjct: 361 SNMDAAQHIFRNLKNVGLEPDESTYRSMIEGWGRAENYKEAEWYYNELKRLGFKPNSSNL 420
Query: 140 FTMINLQARCNDEEGTLETLEDMRRMWCQYSSILSSLLQAYEKVER 3
+TMINLQA+ D E TL+DM+R+ CQYSS+L +LLQAYE+ R
Sbjct: 421 YTMINLQAKYADGEDAARTLDDMKRIGCQYSSVLGTLLQAYERAGR 466
Score = 76.3 bits (186), Expect = 2e-11
Identities = 54/239 (22%), Positives = 110/239 (46%)
Frame = -3
Query: 818 LHELITDSGLALNFQLFNTLIYACYRRGLEKLGTKWFRLMLENAVKPNIATFGMLMSLYQ 639
L+ I +G+ + +++N +I C R ++ F ML + PN T +++ +Y
Sbjct: 647 LYYRILKTGVTWDSEMYNCVINCCARALPVDELSRLFDEMLLHGFAPNTITLNVMLDVYG 706
Query: 638 KGGNVVEAEFAFHKMRSLKLKCQSAYSAMITIFTRLGLYDKSEEIIHFMKEDDVVPNSEN 459
K +A R L +Y+ +I + + K + M+ + + E
Sbjct: 707 KSRLFKKARKVLWLARKRGLVDVISYNTIIAAYGQSKDLKKMLSTVRQMQFNGFSVSLEV 766
Query: 458 WLVQINAYSQQGKLEDAERVLMSMQEAGVPPNIVAYNTMITGYGKVSDMDSAERIFQRLQ 279
+ +++Y ++G++E VL M+E+ + YN MI YG+ ++ + L+
Sbjct: 767 YNCMLDSYGKEGQIESFRSVLRRMKESSCASDHYTYNIMINIYGEQGWIEEVANVLTELK 826
Query: 278 IFGLEPDETTYRTMVEGWGRANHLKNAKWYYQKLKHSGFAPNSSNMFTMINLQARCNDE 102
GL PD +Y T+++ +G A +++A ++++ +G P+ +IN R NDE
Sbjct: 827 ESGLGPDLCSYNTLIKAYGIAGMVEDAVVLVKEMRENGIQPDRITYINLIN-ALRKNDE 884
Score = 61.2 bits (147), Expect = 7e-07
Identities = 52/257 (20%), Positives = 113/257 (43%), Gaps = 3/257 (1%)
Frame = -3
Query: 773 LFNTLIYACYRRGLEKLGTKWFRLMLENAVKPNIATFGMLMSLYQKGGNVVEAEFAFHKM 594
L++ +I +C G + K + M KPN+ ++ +Y G +AE + K+
Sbjct: 523 LYHLVICSCKELGRLENAVKIYSQMPNK--KPNLHIMCTMIDIYSTLGRFSDAENLYLKL 580
Query: 593 RSLKLKCQS-AYSAMITIFTRLGLYDKSEEIIHFMKED-DVVPNSENWLVQINAYSQQGK 420
+S ++ A+S ++ ++ + G + ++ M E ++VP+ + + Y Q G
Sbjct: 581 KSSEISLDMIAFSIVVRMYVKSGSLKDACSVLETMDEQKNIVPDIYLFCDMLRIYQQCGM 640
Query: 419 LEDAERVLMSMQEAGVPPNIVAYNTMITGYGKVSDMDSAERIFQRLQIFGLEPDETTYRT 240
L+ + + + + GV + YN +I + +D R+F + + G P+ T
Sbjct: 641 LDKLQDLYYRILKTGVTWDSEMYNCVINCCARALPVDELSRLFDEMLLHGFAPNTITLNV 700
Query: 239 MVEGWGRANHLKNAKWYYQKLKHSGFAPNSSNMFTMINLQARCNDEEGTLETLEDMRRMW 60
M++ +G++ K A+ + G + + T+I + D + L T+ M+
Sbjct: 701 MLDVYGKSRLFKKARKVLWLARKRGLV-DVISYNTIIAAYGQSKDLKKMLSTVRQMQFNG 759
Query: 59 CQYS-SILSSLLQAYEK 12
S + + +L +Y K
Sbjct: 760 FSVSLEVYNCMLDSYGK 776
>ref|XP_002528404.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223532192|gb|EEF33997.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 955
Score = 459 bits (1180), Expect = e-126
Identities = 242/442 (54%), Positives = 318/442 (71%), Gaps = 13/442 (2%)
Frame = -3
Query: 1289 TTTTRLKPITVSRLSTELVDEE---------DYSVGKENLGLRNPIVEKNKRNIWKRFHG 1137
TT T P+ VSR+ TEL +++ + E L RNP +KR I K++ G
Sbjct: 85 TTLTTFSPVKVSRIETELFEDDVVLSTSNDLPHECINEGLIDRNP---NSKREIRKKYRG 141
Query: 1136 --VKRESKEPFFRKSGKEQ-VQEEKRSSFVCNGKLSVELENAVGNVGPESSVEQCNIILR 966
KR ++ F+ + K +++E FV G+L V N+ S+E CN+IL+
Sbjct: 142 GAKKRGKRKVGFKFNYKRNGIEQEIEDLFVEGGELDVNYSVIHCNL----SLEHCNLILK 197
Query: 965 QLEQCN-DEKTLTFFEWMRSNGKLRENVSAYNFALRVLGRKEDWETAEMLLHELITDSGL 789
+LE+C+ D+K+L FFEWMR+NGKL +N++AYN LRVLGR+EDW TAE ++ E+ G
Sbjct: 198 RLERCSSDDKSLRFFEWMRNNGKLEKNLNAYNVILRVLGRREDWGTAERMIGEVSDSFGS 257
Query: 788 ALNFQLFNTLIYACYRRGLEKLGTKWFRLMLENAVKPNIATFGMLMSLYQKGGNVVEAEF 609
L+F++FNTLIYAC RRG LG KWFR+MLE V+PNIATFGMLM LYQKG NV EAEF
Sbjct: 258 ELDFRVFNTLIYACSRRGNMLLGGKWFRMMLELGVQPNIATFGMLMGLYQKGWNVEEAEF 317
Query: 608 AFHKMRSLKLKCQSAYSAMITIFTRLGLYDKSEEIIHFMKEDDVVPNSENWLVQINAYSQ 429
F KMRS + CQSAYSAMITI+TRL LY+K+EEII M ED V N ENWLV +NAYSQ
Sbjct: 318 VFSKMRSFGIICQSAYSAMITIYTRLSLYNKAEEIIGLMGEDKVAMNVENWLVLLNAYSQ 377
Query: 428 QGKLEDAERVLMSMQEAGVPPNIVAYNTMITGYGKVSDMDSAERIFQRLQIFGLEPDETT 249
QG+LE+AE+VL+ MQEA PNIVA+NT+ITGYGK+S+M +A+R+F +Q GLEPDETT
Sbjct: 378 QGRLEEAEQVLVEMQEASFSPNIVAFNTLITGYGKLSNMAAAQRLFLDIQNAGLEPDETT 437
Query: 248 YRTMVEGWGRANHLKNAKWYYQKLKHSGFAPNSSNMFTMINLQARCNDEEGTLETLEDMR 69
YR+M+EGWGR + K A+WYY++LK G+ PNSSN++T+INLQA+ +D+EG + TL+DM
Sbjct: 438 YRSMIEGWGRTGNYKEAEWYYKELKRLGYMPNSSNLYTLINLQAKHDDDEGAIGTLDDML 497
Query: 68 RMWCQYSSILSSLLQAYEKVER 3
++ CQ+SSIL +LL+AYEK R
Sbjct: 498 KIGCQHSSILGTLLKAYEKAGR 519
Score = 79.0 bits (193), Expect = 3e-12
Identities = 54/233 (23%), Positives = 108/233 (46%), Gaps = 3/233 (1%)
Frame = -3
Query: 818 LHELITDSGLALNFQLFNTLIYACYRRGLEKLGTKWFRLMLENAVKPNIATFGMLMSLYQ 639
L+ I S + + +L+N +I C R ++ F ML+ PN TF +++ +Y
Sbjct: 702 LYHKILKSEVDWDQELYNCIINCCARALPVGELSRLFSEMLQRGFSPNTITFNVMLDVYG 761
Query: 638 KGGNVVEAEFAFHKMRSLKLKCQSAYSAMITIFTRLGLYDKSEEIIHFMKEDDVVPNSEN 459
K +A+ F R L +Y+ +I + + + M+ D + E
Sbjct: 762 KAKLFNKAKELFWMARKRGLVDVISYNTVIAAYGHNKDFKNMASAVRNMQFDGFSVSLEA 821
Query: 458 WLVQINAYSQQGKLEDAERVLMSMQEAGVPPNIVAYNTMITGYGKVSDMDSAERIFQRLQ 279
+ ++ Y ++G++E VL M+++ + YN MI YG+ +D + L+
Sbjct: 822 YNCMLDGYGKEGQMECFRNVLQRMKQSSYTSDHYTYNIMINIYGEQGWIDEVAGVLTELR 881
Query: 278 IFGLEPDETTYRTMVEGWGRANHLKNAKWYYQKLKHSGFAPNS---SNMFTMI 129
GL PD +Y T+++ +G A +++A ++++ +G P+ SN+ T +
Sbjct: 882 ECGLRPDLCSYNTLIKAYGVAGMVEDAIDLVKEMRENGIEPDKITYSNLITAL 934
Score = 59.7 bits (143), Expect = 2e-06
Identities = 39/188 (20%), Positives = 88/188 (46%), Gaps = 2/188 (1%)
Frame = -3
Query: 716 KWFRLMLENAVKPNIATFGMLMSLYQKGGNVVEAEFAFHKMRSLK--LKCQSAYSAMITI 543
K ++ + + + ++ F +++ +Y K G++ +A M + + Y M+ I
Sbjct: 630 KLYQQLKCSGIALDMVAFSIVVRMYVKAGSLKDACSVLATMEKQENIIPDIYLYRDMLRI 689
Query: 542 FTRLGLYDKSEEIIHFMKEDDVVPNSENWLVQINAYSQQGKLEDAERVLMSMQEAGVPPN 363
+ + G+ K +++ H + + +V + E + IN ++ + + R+ M + G PN
Sbjct: 690 YQQCGMMSKLKDLYHKILKSEVDWDQELYNCIINCCARALPVGELSRLFSEMLQRGFSPN 749
Query: 362 IVAYNTMITGYGKVSDMDSAERIFQRLQIFGLEPDETTYRTMVEGWGRANHLKNAKWYYQ 183
+ +N M+ YGK + A+ +F + GL D +Y T++ +G KN +
Sbjct: 750 TITFNVMLDVYGKAKLFNKAKELFWMARKRGL-VDVISYNTVIAAYGHNKDFKNMASAVR 808
Query: 182 KLKHSGFA 159
++ GF+
Sbjct: 809 NMQFDGFS 816
>ref|XP_004146719.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30825,
chloroplastic-like [Cucumis sativus]
Length = 894
Score = 441 bits (1133), Expect = e-121
Identities = 211/375 (56%), Positives = 283/375 (75%), Gaps = 1/375 (0%)
Frame = -3
Query: 1124 SKEPFFRKSGKE-QVQEEKRSSFVCNGKLSVELENAVGNVGPESSVEQCNIILRQLEQCN 948
SK+P R +G + + NG EL+ + + S+E CN IL++LE+CN
Sbjct: 87 SKKPSKRAAGSHFSFSRNCNDNILFNGG---ELDVNYSTISSDLSLEDCNAILKRLEKCN 143
Query: 947 DEKTLTFFEWMRSNGKLRENVSAYNFALRVLGRKEDWETAEMLLHELITDSGLALNFQLF 768
D KTL FFEWMRSNGKL+ NVSAYN LRVLGR+EDW+ AE L+ E+ + G L+FQ+F
Sbjct: 144 DSKTLGFFEWMRSNGKLKHNVSAYNLVLRVLGRQEDWDAAEKLIEEVRAELGSQLDFQVF 203
Query: 767 NTLIYACYRRGLEKLGTKWFRLMLENAVKPNIATFGMLMSLYQKGGNVVEAEFAFHKMRS 588
NTLIYACY+ + GTKWFR+MLE V+PN+ATFGMLM LYQK ++ E+EFAF++MR+
Sbjct: 204 NTLIYACYKSRFVEQGTKWFRMMLECQVQPNVATFGMLMGLYQKKCDIKESEFAFNQMRN 263
Query: 587 LKLKCQSAYSAMITIFTRLGLYDKSEEIIHFMKEDDVVPNSENWLVQINAYSQQGKLEDA 408
+ C++AY++MITI+ R+ LYDK+EE+I M+ED V+PN ENW+V +NAY QQGK+E+A
Sbjct: 264 FGIVCETAYASMITIYIRMNLYDKAEEVIQLMQEDKVIPNLENWVVMLNAYCQQGKMEEA 323
Query: 407 ERVLMSMQEAGVPPNIVAYNTMITGYGKVSDMDSAERIFQRLQIFGLEPDETTYRTMVEG 228
E V SM+EAG NI+AYNT+ITGYGK S+MD+A+R+F ++ G+EPDETTYR+M+EG
Sbjct: 324 ELVFASMEEAGFSSNIIAYNTLITGYGKASNMDTAQRLFLGIKNSGVEPDETTYRSMIEG 383
Query: 227 WGRANHLKNAKWYYQKLKHSGFAPNSSNMFTMINLQARCNDEEGTLETLEDMRRMWCQYS 48
WGRA + K A+WYY++LK G+ PNSSN+FT+INLQA+ DE GTL+TL DM ++ C+ S
Sbjct: 384 WGRAGNYKMAEWYYKELKRRGYMPNSSNLFTLINLQAKHEDEAGTLKTLNDMLKIGCRPS 443
Query: 47 SILSSLLQAYEKVER 3
SI+ ++LQAYEK R
Sbjct: 444 SIVGNVLQAYEKARR 458
Score = 84.0 bits (206), Expect = 1e-13
Identities = 57/239 (23%), Positives = 110/239 (46%)
Frame = -3
Query: 818 LHELITDSGLALNFQLFNTLIYACYRRGLEKLGTKWFRLMLENAVKPNIATFGMLMSLYQ 639
L+ I SG++ + +++N +I C R ++ F ML+ PN T +++ +Y
Sbjct: 641 LYYRILKSGVSWDQEMYNCVINCCSRALPVDELSRLFDEMLQCGFAPNTVTLNVMLDVYG 700
Query: 638 KGGNVVEAEFAFHKMRSLKLKCQSAYSAMITIFTRLGLYDKSEEIIHFMKEDDVVPNSEN 459
K +A F + L +Y+ MI+++ + + + MK + + E
Sbjct: 701 KSKLFTKARNLFGLAQKRGLVDAISYNTMISVYGKNKDFKNMSSTVQKMKFNGFSVSLEA 760
Query: 458 WLVQINAYSQQGKLEDAERVLMSMQEAGVPPNIVAYNTMITGYGKVSDMDSAERIFQRLQ 279
+ ++AY ++ ++E+ VL MQE + YN MI YG+ +D + L+
Sbjct: 761 YNCMLDAYGKECQMENFRSVLQRMQETSSECDHYTYNIMINIYGEQGWIDEVAEVLTELK 820
Query: 278 IFGLEPDETTYRTMVEGWGRANHLKNAKWYYQKLKHSGFAPNSSNMFTMINLQARCNDE 102
GLEPD +Y T+++ +G A ++ A ++++ P+ MI R ND+
Sbjct: 821 ACGLEPDLYSYNTLIKAYGIAGMVEEAAQLVKEMREKRIEPDRITYINMIRALQR-NDQ 878
Score = 63.2 bits (152), Expect = 2e-07
Identities = 59/289 (20%), Positives = 126/289 (43%), Gaps = 6/289 (2%)
Frame = -3
Query: 917 MRSNGKLRENVSAYNFALRVLGRKEDWETAEMLLHELITDSGLALNFQLFNTLIYACYRR 738
+RS+G + ++ AYN +R+ + E A +L + + + L ++ R
Sbjct: 574 LRSSG-IPLDLIAYNVVVRMYVKAGSLEDACSVLDLMAEQQDIVPDIYLLRDMLRIYQRC 632
Query: 737 GL-EKLGTKWFRLMLENAVKPNIATFGMLMSLYQKGGNVVEAEFAFHKMRSLKLKCQSA- 564
G+ KL ++R+ L++ V + + +++ + V E F +M L+C A
Sbjct: 633 GMVHKLADLYYRI-LKSGVSWDQEMYNCVINCCSRALPVDELSRLFDEM----LQCGFAP 687
Query: 563 ----YSAMITIFTRLGLYDKSEEIIHFMKEDDVVPNSENWLVQINAYSQQGKLEDAERVL 396
+ M+ ++ + L+ K+ + ++ +V ++ ++ I+ Y + ++ +
Sbjct: 688 NTVTLNVMLDVYGKSKLFTKARNLFGLAQKRGLV-DAISYNTMISVYGKNKDFKNMSSTV 746
Query: 395 MSMQEAGVPPNIVAYNTMITGYGKVSDMDSAERIFQRLQIFGLEPDETTYRTMVEGWGRA 216
M+ G ++ AYN M+ YGK M++ + QR+Q E D TY M+ +G
Sbjct: 747 QKMKFNGFSVSLEAYNCMLDAYGKECQMENFRSVLQRMQETSSECDHYTYNIMINIYGEQ 806
Query: 215 NHLKNAKWYYQKLKHSGFAPNSSNMFTMINLQARCNDEEGTLETLEDMR 69
+ +LK G P+ + T+I E + +++MR
Sbjct: 807 GWIDEVAEVLTELKACGLEPDLYSYNTLIKAYGIAGMVEEAAQLVKEMR 855
>ref|XP_002869359.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata] gi|297315195|gb|EFH45618.1|
pentatricopeptide repeat-containing protein [Arabidopsis
lyrata subsp. lyrata]
Length = 906
Score = 418 bits (1075), Expect = e-114
Identities = 225/465 (48%), Positives = 305/465 (65%), Gaps = 21/465 (4%)
Frame = -3
Query: 1340 LDIYDTNSSLFIGNPF---------TTTTT----------RLKPITVSRLSTELVDEEDY 1218
LD +D+ F NPF + +T+ R+K I VSRL E + E+
Sbjct: 10 LDPFDSKRFHFSANPFQFPDQVPIFSVSTSVPATRIGSLIRVKKIRVSRLDIEAKEAEN- 68
Query: 1217 SVGKENLGLRNPIVEKNKRNIWKRFHGVKRESKEPFFRKSG--KEQVQEEKRSSFVCNGK 1044
++ +++ + K K + G +R +K+ RK +E E + FV NG+
Sbjct: 69 AIDSDSVNVERSSNSKLKGSNTVT-SGNQRGTKKDVARKFSFRRESNDLELENLFVNNGE 127
Query: 1043 LSVELENAVGNVGPESSVEQCNIILRQLEQCNDEKTLTFFEWMRSNGKLRENVSAYNFAL 864
+ V + P S+E N IL++LE C+D + FF+WMR GKL N AY+ L
Sbjct: 128 MDVNYSA----IKPGLSLEHYNAILKRLESCSDTNAIKFFDWMRCKGKLEGNFGAYSLIL 183
Query: 863 RVLGRKEDWETAEMLLHELITDSGLALNFQLFNTLIYACYRRGLEKLGTKWFRLMLENAV 684
RVLGR+E+W AE L+ EL G +FQ+FNT+IYAC ++G KL +KWF++MLE V
Sbjct: 184 RVLGRREEWNRAEDLIEELCGFQGFQQSFQVFNTVIYACTKKGNVKLASKWFQMMLELGV 243
Query: 683 KPNIATFGMLMSLYQKGGNVVEAEFAFHKMRSLKLKCQSAYSAMITIFTRLGLYDKSEEI 504
+PN+AT GMLM LYQK NV EAEFAF MR ++ C+SAYS+MITI+TRL LY+K+EE+
Sbjct: 244 RPNVATIGMLMGLYQKNWNVDEAEFAFSHMRKFEIVCESAYSSMITIYTRLRLYEKAEEV 303
Query: 503 IHFMKEDDVVPNSENWLVQINAYSQQGKLEDAERVLMSMQEAGVPPNIVAYNTMITGYGK 324
I+ MK+D V ENWLV +NAYSQQGK+E AE VL+SM+ AG PNI+AYNT+ITGYGK
Sbjct: 304 INLMKQDRVRLKLENWLVMLNAYSQQGKMEQAESVLISMEAAGFAPNIIAYNTLITGYGK 363
Query: 323 VSDMDSAERIFQRLQIFGLEPDETTYRTMVEGWGRANHLKNAKWYYQKLKHSGFAPNSSN 144
VS M++A+ +F RL GLEPDET+YR+M+EGWGRA++ + A YYQ+LK G+ PNSSN
Sbjct: 364 VSKMEAAKSLFHRLSDIGLEPDETSYRSMIEGWGRADNYEEANHYYQELKRCGYKPNSSN 423
Query: 143 MFTMINLQARCNDEEGTLETLEDMRRMWCQYSSILSSLLQAYEKV 9
+FT+INLQA+ D +G ++T+EDM + CQY SIL +LQAYEKV
Sbjct: 424 LFTLINLQAKYGDRDGAIKTIEDMTSIGCQYPSILGIILQAYEKV 468
Score = 73.6 bits (179), Expect = 1e-10
Identities = 62/282 (21%), Positives = 126/282 (44%), Gaps = 1/282 (0%)
Frame = -3
Query: 944 EKTLTFFEWMRSNGKLRENVSAYNFALRVLGRKEDWETAEMLLHELITDSGLALNFQLFN 765
E+ + E M + +V + LR+ +K D + L+ I SG+ + +++N
Sbjct: 612 EEACSVLEIMDEQKDIVPDVYLFRDMLRIY-QKCDLQDKLQHLYYRIQKSGIHWDQEMYN 670
Query: 764 TLIYACYRR-GLEKLGTKWFRLMLENAVKPNIATFGMLMSLYQKGGNVVEAEFAFHKMRS 588
+I C R L++L ++ F M+ PN TF +L+ +Y K + F +
Sbjct: 671 CVINCCARALPLDEL-SRTFEEMIRYGFTPNTVTFNVLLDVYGKAKLFKKVNELFLLAKR 729
Query: 587 LKLKCQSAYSAMITIFTRLGLYDKSEEIIHFMKEDDVVPNSENWLVQINAYSQQGKLEDA 408
+ +Y+ +I + + + I M+ D + E + ++AY + ++E
Sbjct: 730 HGVVDVISYNTIIAAYGKNKDFTNMSSAIKNMQFDGFSVSLEAYNTLLDAYGKDKQMEKF 789
Query: 407 ERVLMSMQEAGVPPNIVAYNTMITGYGKVSDMDSAERIFQRLQIFGLEPDETTYRTMVEG 228
+L M+++ P+ YN MI YG+ +D + + L+ GL PD +Y T+++
Sbjct: 790 RSILKRMKKSTSGPDHYTYNIMINIYGEQGWIDEVAGVLKELKESGLGPDLCSYNTLIKA 849
Query: 227 WGRANHLKNAKWYYQKLKHSGFAPNSSNMFTMINLQARCNDE 102
+G ++ A ++++ P+ +T + R NDE
Sbjct: 850 YGIGGMVEEAVGLVKEMRGKNITPDKVT-YTNLVTALRKNDE 890
>ref|NP_567856.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635625|sp|O65567.2|PP342_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At4g30825, chloroplastic; Flags: Precursor
gi|332660415|gb|AEE85815.1| pentatricopeptide
repeat-containing protein [Arabidopsis thaliana]
Length = 904
Score = 409 bits (1051), Expect = e-111
Identities = 213/427 (49%), Positives = 283/427 (66%)
Frame = -3
Query: 1289 TTTTRLKPITVSRLSTELVDEEDYSVGKENLGLRNPIVEKNKRNIWKRFHGVKRESKEPF 1110
++T L I VS L TE + S P+ + G K+ F
Sbjct: 52 SSTRVLDKIRVSSLGTEANENAINSASAA------PVERSRSSKLSGDQRGTKKYVARKF 105
Query: 1109 FRKSGKEQVQEEKRSSFVCNGKLSVELENAVGNVGPESSVEQCNIILRQLEQCNDEKTLT 930
+ G ++ E + FV NG++ V + P S+E CN IL++LE C+D +
Sbjct: 106 SFRRGSNDLELE--NLFVNNGEIDVNYSA----IKPGQSLEHCNGILKRLESCSDTNAIK 159
Query: 929 FFEWMRSNGKLRENVSAYNFALRVLGRKEDWETAEMLLHELITDSGLALNFQLFNTLIYA 750
FF+WMR NGKL N AY+ LRVLGR+E+W+ AE L+ EL ++Q+FNT+IYA
Sbjct: 160 FFDWMRCNGKLVGNFVAYSLILRVLGRREEWDRAEDLIKELCGFHEFQKSYQVFNTVIYA 219
Query: 749 CYRRGLEKLGTKWFRLMLENAVKPNIATFGMLMSLYQKGGNVVEAEFAFHKMRSLKLKCQ 570
C ++G KL +KWF +MLE V+PN+AT GMLM LYQK NV EAEFAF MR + C+
Sbjct: 220 CTKKGNVKLASKWFHMMLEFGVRPNVATIGMLMGLYQKNWNVEEAEFAFSHMRKFGIVCE 279
Query: 569 SAYSAMITIFTRLGLYDKSEEIIHFMKEDDVVPNSENWLVQINAYSQQGKLEDAERVLMS 390
SAYS+MITI+TRL LYDK+EE+I MK+D V ENWLV +NAYSQQGK+E AE +L+S
Sbjct: 280 SAYSSMITIYTRLRLYDKAEEVIDLMKQDRVRLKLENWLVMLNAYSQQGKMELAESILVS 339
Query: 389 MQEAGVPPNIVAYNTMITGYGKVSDMDSAERIFQRLQIFGLEPDETTYRTMVEGWGRANH 210
M+ AG PNI+AYNT+ITGYGK+ M++A+ +F RL GLEPDET+YR+M+EGWGRA++
Sbjct: 340 MEAAGFSPNIIAYNTLITGYGKIFKMEAAQGLFHRLCNIGLEPDETSYRSMIEGWGRADN 399
Query: 209 LKNAKWYYQKLKHSGFAPNSSNMFTMINLQARCNDEEGTLETLEDMRRMWCQYSSILSSL 30
+ AK YYQ+LK G+ PNS N+FT+INLQA+ D +G ++T+EDM + CQYSSIL +
Sbjct: 400 YEEAKHYYQELKRCGYKPNSFNLFTLINLQAKYGDRDGAIKTIEDMTGIGCQYSSILGII 459
Query: 29 LQAYEKV 9
LQAYEKV
Sbjct: 460 LQAYEKV 466
Score = 75.1 bits (183), Expect = 5e-11
Identities = 66/283 (23%), Positives = 126/283 (44%), Gaps = 2/283 (0%)
Frame = -3
Query: 944 EKTLTFFEWMRSNGKLRENVSAYNFALRVLGRKEDWETAEMLLHELITDSGLALNFQLFN 765
E+ + E M + +V + LR+ +K D + L+ I SG+ N +++N
Sbjct: 610 EEACSVLEIMDEQKDIVPDVYLFRDMLRIY-QKCDLQDKLQHLYYRIRKSGIHWNQEMYN 668
Query: 764 TLIYACYRR-GLEKL-GTKWFRLMLENAVKPNIATFGMLMSLYQKGGNVVEAEFAFHKMR 591
+I C R L++L GT F M+ PN TF +L+ +Y K + F +
Sbjct: 669 CVINCCARALPLDELSGT--FEEMIRYGFTPNTVTFNVLLDVYGKAKLFKKVNELFLLAK 726
Query: 590 SLKLKCQSAYSAMITIFTRLGLYDKSEEIIHFMKEDDVVPNSENWLVQINAYSQQGKLED 411
+ +Y+ +I + + Y I M+ D + E + ++AY + ++E
Sbjct: 727 RHGVVDVISYNTIIAAYGKNKDYTNMSSAIKNMQFDGFSVSLEAYNTLLDAYGKDKQMEK 786
Query: 410 AERVLMSMQEAGVPPNIVAYNTMITGYGKVSDMDSAERIFQRLQIFGLEPDETTYRTMVE 231
+L M+++ P+ YN MI YG+ +D + + L+ GL PD +Y T+++
Sbjct: 787 FRSILKRMKKSTSGPDHYTYNIMINIYGEQGWIDEVADVLKELKESGLGPDLCSYNTLIK 846
Query: 230 GWGRANHLKNAKWYYQKLKHSGFAPNSSNMFTMINLQARCNDE 102
+G ++ A ++++ P+ +T + R NDE
Sbjct: 847 AYGIGGMVEEAVGLVKEMRGRNIIPDKVT-YTNLVTALRRNDE 888