BLASTX nr result
ID: Coptis23_contig00005018
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00005018
(1011 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABK94910.1| unknown [Populus trichocarpa] 143 8e-63
ref|XP_002301781.1| predicted protein [Populus trichocarpa] gi|2... 130 7e-59
ref|XP_003530871.1| PREDICTED: E3 ubiquitin-protein ligase PRT1-... 129 6e-57
emb|CBI37313.3| unnamed protein product [Vitis vinifera] 135 2e-29
ref|XP_002266086.1| PREDICTED: E3 ubiquitin-protein ligase PRT1-... 135 2e-29
>gb|ABK94910.1| unknown [Populus trichocarpa]
Length = 469
Score = 143 bits (360), Expect(2) = 8e-63
Identities = 67/99 (67%), Positives = 75/99 (75%)
Frame = -2
Query: 608 QKCPHSSPPLTWSCLSWLGDRGLNVHLGVGCDYCGMYPIVGERYKCKDCEEAIGFDLCGE 429
+K SS T LSW D VH+GVGCD CG+YPIVG+RYKCKDC E IGFDLCG+
Sbjct: 311 EKSFQSSSATTRENLSWRADPHSKVHVGVGCDSCGVYPIVGDRYKCKDCVEEIGFDLCGD 370
Query: 428 CYNTSSKLPGRFNQQHTPEHKFEPVKSDLIRNIMRRLVS 312
CYNT SK PGRFNQQHT EHKFE VKS++I NIM RLV+
Sbjct: 371 CYNTCSKRPGRFNQQHTSEHKFELVKSNIIHNIMLRLVT 409
Score = 124 bits (312), Expect(2) = 8e-63
Identities = 60/95 (63%), Positives = 71/95 (74%)
Frame = -1
Query: 1011 VEESSILENDLKDGICKLFSISDVLCVACKQLLFRPAVLNCGHVYCQSCIVIPVNEALRC 832
VEE+++ E D + CK SI+DV C CKQLLF P VLNCGHVYC++CI PVNE L C
Sbjct: 196 VEENNLPE-DKSNRNCKQVSIADVQCSTCKQLLFHPVVLNCGHVYCETCIG-PVNEMLTC 253
Query: 831 QLCQSSHPKGIPKVCLELDHLLEKRFPKEYALRRE 727
Q+CQS HP+G PKVCLE DH LE+ FP EYA+R E
Sbjct: 254 QVCQSLHPRGFPKVCLEFDHFLEEYFPTEYAMRIE 288
>ref|XP_002301781.1| predicted protein [Populus trichocarpa] gi|222843507|gb|EEE81054.1|
predicted protein [Populus trichocarpa]
Length = 382
Score = 130 bits (326), Expect(2) = 7e-59
Identities = 60/87 (68%), Positives = 65/87 (74%)
Frame = -2
Query: 608 QKCPHSSPPLTWSCLSWLGDRGLNVHLGVGCDYCGMYPIVGERYKCKDCEEAIGFDLCGE 429
+K SS T LSW D VH+GVGCD CG+YPIVG+RYKCKDC E IGFDLCG+
Sbjct: 296 EKSFQSSSATTRENLSWRADPHSKVHVGVGCDSCGVYPIVGDRYKCKDCVEEIGFDLCGD 355
Query: 428 CYNTSSKLPGRFNQQHTPEHKFEPVKS 348
CYNT SK PGRFNQQHT EHKFE VKS
Sbjct: 356 CYNTCSKRPGRFNQQHTSEHKFELVKS 382
Score = 124 bits (312), Expect(2) = 7e-59
Identities = 60/95 (63%), Positives = 71/95 (74%)
Frame = -1
Query: 1011 VEESSILENDLKDGICKLFSISDVLCVACKQLLFRPAVLNCGHVYCQSCIVIPVNEALRC 832
VEE+++ E D + CK SI+DV C CKQLLF P VLNCGHVYC++CI PVNE L C
Sbjct: 183 VEENNLPE-DKSNRNCKQVSIADVQCSTCKQLLFHPVVLNCGHVYCETCIG-PVNEMLTC 240
Query: 831 QLCQSSHPKGIPKVCLELDHLLEKRFPKEYALRRE 727
Q+CQS HP+G PKVCLE DH LE+ FP EYA+R E
Sbjct: 241 QVCQSLHPRGFPKVCLEFDHFLEEYFPTEYAMRIE 275
>ref|XP_003530871.1| PREDICTED: E3 ubiquitin-protein ligase PRT1-like [Glycine max]
Length = 394
Score = 129 bits (324), Expect(2) = 6e-57
Identities = 57/102 (55%), Positives = 74/102 (72%)
Frame = -2
Query: 617 LDGQKCPHSSPPLTWSCLSWLGDRGLNVHLGVGCDYCGMYPIVGERYKCKDCEEAIGFDL 438
LDG K P ++ W D VH+GVGCD+CGM+PI+G+RY+C DC+E +GFDL
Sbjct: 261 LDGGKKPENT--------DWWSDPDSKVHIGVGCDFCGMFPIIGDRYRCIDCKEKMGFDL 312
Query: 437 CGECYNTSSKLPGRFNQQHTPEHKFEPVKSDLIRNIMRRLVS 312
CG+CY + SKLPGRFNQQHT EHKF+ V+ ++I NIM RL +
Sbjct: 313 CGDCYASRSKLPGRFNQQHTSEHKFKLVQPNIIHNIMLRLAT 354
Score = 119 bits (297), Expect(2) = 6e-57
Identities = 49/76 (64%), Positives = 62/76 (81%)
Frame = -1
Query: 954 SISDVLCVACKQLLFRPAVLNCGHVYCQSCIVIPVNEALRCQLCQSSHPKGIPKVCLELD 775
S++DV C CKQLLF P VLNCGHVYCQ C++ +E LRC++CQS HP+G+PKVCLELD
Sbjct: 167 SVADVTCTMCKQLLFHPVVLNCGHVYCQICVINIDDEMLRCKVCQSPHPRGLPKVCLELD 226
Query: 774 HLLEKRFPKEYALRRE 727
H LE++FP+EY RR+
Sbjct: 227 HFLEEQFPEEYGQRRD 242
>emb|CBI37313.3| unnamed protein product [Vitis vinifera]
Length = 451
Score = 135 bits (340), Expect = 2e-29
Identities = 61/94 (64%), Positives = 76/94 (80%)
Frame = -1
Query: 1008 EESSILENDLKDGICKLFSISDVLCVACKQLLFRPAVLNCGHVYCQSCIVIPVNEALRCQ 829
EE+ +L+N+L D C+ SI+DV C ACKQLLFRP VLNCGHVYC++C IPV+E RC+
Sbjct: 171 EENVVLKNNL-DQTCEQLSIADVQCTACKQLLFRPVVLNCGHVYCETCFNIPVDERFRCK 229
Query: 828 LCQSSHPKGIPKVCLELDHLLEKRFPKEYALRRE 727
+CQ HP G PKVCLELD+ LE++FP+EYALRRE
Sbjct: 230 VCQVLHPSGFPKVCLELDNFLEEQFPEEYALRRE 263
Score = 133 bits (334), Expect = 8e-29
Identities = 57/85 (67%), Positives = 68/85 (80%)
Frame = -2
Query: 563 SWLGDRGLNVHLGVGCDYCGMYPIVGERYKCKDCEEAIGFDLCGECYNTSSKLPGRFNQQ 384
+WL D G +H GCD CGMYPIVG+RY+CKDC+E IGFDLCG+CYNT+SKLPGRFNQQ
Sbjct: 300 TWLRDNGPKIHPCAGCDSCGMYPIVGDRYRCKDCKEKIGFDLCGDCYNTNSKLPGRFNQQ 359
Query: 383 HTPEHKFEPVKSDLIRNIMRRLVSE 309
HTPEHKFE V L + +MR +V +
Sbjct: 360 HTPEHKFELVNWKLKQEMMRLMVEQ 384
>ref|XP_002266086.1| PREDICTED: E3 ubiquitin-protein ligase PRT1-like [Vitis vinifera]
Length = 470
Score = 135 bits (340), Expect = 2e-29
Identities = 61/94 (64%), Positives = 76/94 (80%)
Frame = -1
Query: 1008 EESSILENDLKDGICKLFSISDVLCVACKQLLFRPAVLNCGHVYCQSCIVIPVNEALRCQ 829
EE+ +L+N+L D C+ SI+DV C ACKQLLFRP VLNCGHVYC++C IPV+E RC+
Sbjct: 190 EENVVLKNNL-DQTCEQLSIADVQCTACKQLLFRPVVLNCGHVYCETCFNIPVDERFRCK 248
Query: 828 LCQSSHPKGIPKVCLELDHLLEKRFPKEYALRRE 727
+CQ HP G PKVCLELD+ LE++FP+EYALRRE
Sbjct: 249 VCQVLHPSGFPKVCLELDNFLEEQFPEEYALRRE 282
Score = 133 bits (334), Expect = 8e-29
Identities = 57/85 (67%), Positives = 68/85 (80%)
Frame = -2
Query: 563 SWLGDRGLNVHLGVGCDYCGMYPIVGERYKCKDCEEAIGFDLCGECYNTSSKLPGRFNQQ 384
+WL D G +H GCD CGMYPIVG+RY+CKDC+E IGFDLCG+CYNT+SKLPGRFNQQ
Sbjct: 319 TWLRDNGPKIHPCAGCDSCGMYPIVGDRYRCKDCKEKIGFDLCGDCYNTNSKLPGRFNQQ 378
Query: 383 HTPEHKFEPVKSDLIRNIMRRLVSE 309
HTPEHKFE V L + +MR +V +
Sbjct: 379 HTPEHKFELVNWKLKQEMMRLMVEQ 403