BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00005011
         (1957 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002275560.2| PREDICTED: 5'-3' exoribonuclease 4-like [Vit...   369   1e-99
emb|CBI26575.3| unnamed protein product [Vitis vinifera]              369   1e-99
ref|XP_002519992.1| 5'->3' exoribonuclease, putative [Ricinus co...   335   2e-89
ref|XP_002319214.1| predicted protein [Populus trichocarpa] gi|2...   312   2e-82
ref|XP_003549459.1| PREDICTED: 5'-3' exoribonuclease 3-like [Gly...   280   1e-72

>ref|XP_002275560.2| PREDICTED: 5'-3' exoribonuclease 4-like [Vitis vinifera]
          Length = 834

 Score =  369 bits (948), Expect = 1e-99
 Identities = 176/249 (70%), Positives = 198/249 (79%)
 Frame = +3

Query: 3    WFYPYHYAPFASDFLNIEHCEIHFTPGTPFKPFDQLMGVLPAASAHALPLCYRELMTDSS 182
            WFYPYHYAPFASD   ++  +I FT G PFKPFDQLMGVLPAASAHALPL YR+LM D +
Sbjct: 539  WFYPYHYAPFASDIYGLDQLDIQFTLGKPFKPFDQLMGVLPAASAHALPLYYRKLMMDET 598

Query: 183  SPILDFYPTDFELDMFGKRHAWQAICKLPFIEESRLLLEIAKVEHTLTDEEKRRNNFGMD 362
            SPILDFYP DFELDM GKR+ WQAICKLPFI+ESRLL EIAKVE TLTD+EK RN  GMD
Sbjct: 599  SPILDFYPADFELDMNGKRYPWQAICKLPFIKESRLLAEIAKVESTLTDKEKLRNRLGMD 658

Query: 363  LLFVHISHPLAAEIIIFFERNKDHPKLAKAKVKRRIDPKFSGGMNGFMYISDKPVWPLEV 542
             LF+HIS PLA +I  F++R KDHPKL  AKVKR+IDPKFSGGMNG+MYISD+PVWP E 
Sbjct: 659  ALFIHISDPLAVKIFSFYKRKKDHPKLPMAKVKRKIDPKFSGGMNGYMYISDRPVWPAEF 718

Query: 543  CSSINDMEKISMNKVISVFYKYPTSHTHIPRPPESVVMPGMSVRKEDIFPAPVLWHEKSV 722
             S I DME I+ NKVIS+FYK P+ H HIPRP E V++PG +V K  +   PVLWHE S 
Sbjct: 719  YSPIEDMEMIAQNKVISIFYKCPSFHPHIPRPLEGVILPGKTVIKPHLLRPPVLWHETSA 778

Query: 723  VLGRLHSER 749
            V GR  SER
Sbjct: 779  VCGRKFSER 787


>emb|CBI26575.3| unnamed protein product [Vitis vinifera]
          Length = 845

 Score =  369 bits (948), Expect = 1e-99
 Identities = 176/249 (70%), Positives = 198/249 (79%)
 Frame = +3

Query: 3    WFYPYHYAPFASDFLNIEHCEIHFTPGTPFKPFDQLMGVLPAASAHALPLCYRELMTDSS 182
            WFYPYHYAPFASD   ++  +I FT G PFKPFDQLMGVLPAASAHALPL YR+LM D +
Sbjct: 520  WFYPYHYAPFASDIYGLDQLDIQFTLGKPFKPFDQLMGVLPAASAHALPLYYRKLMMDET 579

Query: 183  SPILDFYPTDFELDMFGKRHAWQAICKLPFIEESRLLLEIAKVEHTLTDEEKRRNNFGMD 362
            SPILDFYP DFELDM GKR+ WQAICKLPFI+ESRLL EIAKVE TLTD+EK RN  GMD
Sbjct: 580  SPILDFYPADFELDMNGKRYPWQAICKLPFIKESRLLAEIAKVESTLTDKEKLRNRLGMD 639

Query: 363  LLFVHISHPLAAEIIIFFERNKDHPKLAKAKVKRRIDPKFSGGMNGFMYISDKPVWPLEV 542
             LF+HIS PLA +I  F++R KDHPKL  AKVKR+IDPKFSGGMNG+MYISD+PVWP E 
Sbjct: 640  ALFIHISDPLAVKIFSFYKRKKDHPKLPMAKVKRKIDPKFSGGMNGYMYISDRPVWPAEF 699

Query: 543  CSSINDMEKISMNKVISVFYKYPTSHTHIPRPPESVVMPGMSVRKEDIFPAPVLWHEKSV 722
             S I DME I+ NKVIS+FYK P+ H HIPRP E V++PG +V K  +   PVLWHE S 
Sbjct: 700  YSPIEDMEMIAQNKVISIFYKCPSFHPHIPRPLEGVILPGKTVIKPHLLRPPVLWHETSA 759

Query: 723  VLGRLHSER 749
            V GR  SER
Sbjct: 760  VCGRKFSER 768


>ref|XP_002519992.1| 5'->3' exoribonuclease, putative [Ricinus communis]
            gi|223540756|gb|EEF42316.1| 5'->3' exoribonuclease,
            putative [Ricinus communis]
          Length = 1545

 Score =  335 bits (860), Expect = 2e-89
 Identities = 171/280 (61%), Positives = 204/280 (72%)
 Frame = +3

Query: 3    WFYPYHYAPFASDFLNIEHCEIHFTPGTPFKPFDQLMGVLPAASAHALPLCYRELMTDSS 182
            WFYPYHYAPFASDF  ++  +I FT G PFKP DQLMGVLPAASAHALP+ YR+LMTD S
Sbjct: 520  WFYPYHYAPFASDFYGLDDLKIQFTLGVPFKPMDQLMGVLPAASAHALPMLYRKLMTDES 579

Query: 183  SPILDFYPTDFELDMFGKRHAWQAICKLPFIEESRLLLEIAKVEHTLTDEEKRRNNFGMD 362
            SPILDFYP+DFELDM GKR  WQAICKLPFI+ESRLL EI KVEHTLTD+E+RRN+ G +
Sbjct: 580  SPILDFYPSDFELDMNGKRRKWQAICKLPFIDESRLLSEITKVEHTLTDDERRRNSLGSN 639

Query: 363  LLFVHISHPLAAEIIIFFERNKDHPKLAKAKVKRRIDPKFSGGMNGFMYISDKPVWPLEV 542
             LFVHISHPLA  II FF++N+D   L K      IDP+ SGGMNGF+YISD  V P EV
Sbjct: 640  FLFVHISHPLADMIIYFFKQNRDPNVLLK------IDPELSGGMNGFVYISDNAVCPEEV 693

Query: 543  CSSINDMEKISMNKVISVFYKYPTSHTHIPRPPESVVMPGMSVRKEDIFPAPVLWHEKSV 722
             S ++ M  I+ N+VISV Y+YP  H HI R P+ V++PG  +       +P+L HEK V
Sbjct: 694  SSPVDGMRMIAHNRVISVSYRYPLFHYHISRLPQGVILPGKDI-------SPLLQHEKVV 746

Query: 723  VLGRLHSERPVPNSISGSCLAKLAHRLVLEYYTEKMKENV 842
              G + S RP+P S+SG+ LA LAHRLV      K  +N+
Sbjct: 747  PAG-VSSRRPIPRSVSGTHLANLAHRLVSSCTPIKQDDNL 785


>ref|XP_002319214.1| predicted protein [Populus trichocarpa] gi|222857590|gb|EEE95137.1|
            predicted protein [Populus trichocarpa]
          Length = 692

 Score =  312 bits (800), Expect = 2e-82
 Identities = 151/219 (68%), Positives = 173/219 (78%)
 Frame = +3

Query: 3    WFYPYHYAPFASDFLNIEHCEIHFTPGTPFKPFDQLMGVLPAASAHALPLCYRELMTDSS 182
            WFYPYHYAPFASDF   +  EIHFT G PFKPFDQLM VLPAASAHALPL YR+LM D+S
Sbjct: 472  WFYPYHYAPFASDFYGCDQLEIHFTLGEPFKPFDQLMAVLPAASAHALPLFYRKLMIDAS 531

Query: 183  SPILDFYPTDFELDMFGKRHAWQAICKLPFIEESRLLLEIAKVEHTLTDEEKRRNNFGMD 362
            SPILDFYPTDFELD  GKR +WQAICKLPFIEESRL+ EI KVEHTLTDEE+RRN  G D
Sbjct: 532  SPILDFYPTDFELDNNGKRFSWQAICKLPFIEESRLVSEITKVEHTLTDEERRRNRLGYD 591

Query: 363  LLFVHISHPLAAEIIIFFERNKDHPKLAKAKVKRRIDPKFSGGMNGFMYISDKPVWPLEV 542
            +L VH+SHPLA ++I  FE  KD   L  A  K +IDPK SGGMNG++YIS+KP WPL +
Sbjct: 592  VLCVHVSHPLAVKVISLFE-CKDQSALPTANGKLKIDPKISGGMNGYIYISEKPEWPLGI 650

Query: 543  CSSINDMEKISMNKVISVFYKYPTSHTHIPRPPESVVMP 659
             S I+ M  I+  +VISVFY+YP  H+HIPR PE V++P
Sbjct: 651  FSPIDGMLMIASEQVISVFYEYPPFHSHIPRLPEGVILP 689


>ref|XP_003549459.1| PREDICTED: 5'-3' exoribonuclease 3-like [Glycine max]
          Length = 1065

 Score =  280 bits (716), Expect = 1e-72
 Identities = 149/283 (52%), Positives = 179/283 (63%), Gaps = 4/283 (1%)
 Frame = +3

Query: 3    WFYPYHYAPFASDFLNIEHCEIHFTPGTPFKPFDQLMGVLPAASAHALPLCYRELMTDSS 182
            WFYPYHYAPFASD   +   +I F  GTPFKP+DQL+GV PAAS+HALP  YR LMTD S
Sbjct: 598  WFYPYHYAPFASDLKGLGELDISFKLGTPFKPYDQLLGVFPAASSHALPEPYRRLMTDPS 657

Query: 183  SPILDFYPTDFELDMFGKRHAWQAICKLPFIEESRLLLEIAKVEHTLTDEEKRRNNFGMD 362
            SPI+DFYP DFE+DM GKR AWQ I KLPFI+E RLL E+ K+E+ LT EEKRRN    D
Sbjct: 658  SPIIDFYPVDFEVDMNGKRFAWQGIAKLPFIDEVRLLAEVQKIENLLTPEEKRRNAIMFD 717

Query: 363  LLFVHISHPLAAEIIIFFERNKDHPKLAKAKVKRRIDPKFSGGMNGFMYISDKPVWPLEV 542
            LLFV+  HPL+A I     + K+ P   +A VK +I+PK SGGMNG++ +      P   
Sbjct: 718  LLFVNSCHPLSACISTLDNKCKNMPNSERAVVKEKINPKESGGMNGYISLCGGEPCPPIF 777

Query: 543  CSSINDMEKISMNKVISVFYKYPTSHTHIPRPPESVVMPGMSVRKEDIFPAPVLWHEKSV 722
             S +  ME I  N VI   Y+ P +HTHI RPP+ V  P   V  ED+ P PVLWHE S 
Sbjct: 778  RSPVASMEDIMDNHVICAIYRLPDAHTHITRPPQGVKFPKKIVGIEDLKPEPVLWHEDS- 836

Query: 723  VLGRLH----SERPVPNSISGSCLAKLAHRLVLEYYTEKMKEN 839
              GR H      +  P SISG  L   AHRL++     K+  N
Sbjct: 837  --GRRHHAENGRKNPPGSISGRELGDAAHRLIVNSLQAKVDTN 877