BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00004950
         (484 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002523656.1| chromodomain helicase DNA binding protein, p...    69   4e-10
ref|XP_003631193.1| PREDICTED: uncharacterized protein LOC100247...    65   4e-09
tpg|DAA16422.1| TPA: G protein-coupled receptor associated sorti...    58   9e-07
ref|YP_004741912.1| copper-binding protein [Methanococcus maripa...    57   1e-06
ref|XP_001462032.1| hypothetical protein [Paramecium tetraurelia...    57   2e-06

>ref|XP_002523656.1| chromodomain helicase DNA binding protein, putative [Ricinus
            communis] gi|223537108|gb|EEF38742.1| chromodomain
            helicase DNA binding protein, putative [Ricinus communis]
          Length = 2257

 Score = 68.9 bits (167), Expect = 4e-10
 Identities = 43/106 (40%), Positives = 61/106 (57%)
 Frame = -2

Query: 483  PGPHALSIPGMLSSSSVRNELHLPKPLSNGDERESRETKNVCKKDEVGQSSEVGGSDQLP 304
            PGPH  S  GM SSS + ++L LPK +   DE    + +   +KD+  Q         LP
Sbjct: 2155 PGPHLSSSSGMTSSSFLESKLPLPKSV---DEVGVSDAQGAEEKDKDMQGLPPDTQIILP 2211

Query: 303  VERFGKTESGDSSKTHSDPRQNDKADVEEISSEEPLSDHRRSEQKE 166
             E+ G+ + GDSSK+ ++  Q +K DVEEISSE  +SDH  SE ++
Sbjct: 2212 EEKPGQPDDGDSSKSGTNNSQTEKPDVEEISSEGTVSDHLVSEHEQ 2257


>ref|XP_003631193.1| PREDICTED: uncharacterized protein LOC100247555 [Vitis vinifera]
          Length = 2355

 Score = 65.5 bits (158), Expect = 4e-09
 Identities = 44/106 (41%), Positives = 59/106 (55%), Gaps = 1/106 (0%)
 Frame = -2

Query: 483  PGPHALSIPGMLSSSSVRNELHLPKPLSNGDERESRETKNVCKKDEVGQSSEVGGSDQLP 304
            PGPH   +PGM SS  + ++L LPK +  G+  +S       K     Q+S +     L 
Sbjct: 2250 PGPHIPPVPGMPSSGFLDSKLPLPKFIDRGEFPDSTGASGNQKGK---QTSTLSVHAPLN 2306

Query: 303  VERFGKTESGDSS-KTHSDPRQNDKADVEEISSEEPLSDHRRSEQK 169
             ER  + ESGDSS KT SDP   +  +VEEISSE  +SDHR S+ +
Sbjct: 2307 QERREQIESGDSSSKTQSDPSHAEHPNVEEISSEGTVSDHRVSDHE 2352


>tpg|DAA16422.1| TPA: G protein-coupled receptor associated sorting protein 2-like
           [Bos taurus]
          Length = 427

 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 33/135 (24%), Positives = 64/135 (47%), Gaps = 4/135 (2%)
 Frame = -2

Query: 399 NGDERESRETKNVCKKDEVGQSSEVGGSDQLPVERFGKTESGDSSKTHSDPRQNDKADVE 220
           N  ++   +T N  KK +  +  +    D+   +   K E  D +K        DK  V+
Sbjct: 94  NVKKKGDEDTDNKDKKGDEDRKDQDKKEDEDSNKNKDKKEDEDKTKNKDMKGDEDKIKVK 153

Query: 219 EISSEEPLS----DHRRSEQKETVSDDHRSEQKETLSDDHRSEQKEIVSDDHKSEQKATV 52
           +I  +E  +    D  ++E K+   D+ ++E K+T  D+ + E K++  D+ K+E K   
Sbjct: 154 DIKEDEEKTEDKGDKEKTENKDMKGDEDKTEVKDTKGDEEKIEDKDMQGDEEKTEDKGMK 213

Query: 51  SDDLRSEQKETVSDD 7
            D+ ++E K+   D+
Sbjct: 214 GDEEKTEDKDMKGDE 228


>ref|YP_004741912.1| copper-binding protein [Methanococcus maripaludis X1]
            gi|339903727|gb|AEK19169.1| periplasmic copper-binding
            protein [Methanococcus maripaludis X1]
          Length = 917

 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 44/134 (32%), Positives = 60/134 (44%), Gaps = 2/134 (1%)
 Frame = -2

Query: 402  SNGDERESRETKNVCKKDEVGQSSEVGGSDQLPV--ERFGKTESGDSSKTHSDPRQNDKA 229
            +N DE ++ ET+N    D+ G  S+    +  P+  E  G  +SGD+S T  D       
Sbjct: 736  NNTDESQNSETQNNTDADDGGNISDNPSENDSPLEPEDSGSADSGDTSDTEPDNNDEGSE 795

Query: 228  DVEEISSEEPLSDHRRSEQKETVSDDHRSEQKETLSDDHRSEQKEIVSDDHKSEQKATVS 49
            D  +I+SE    D    E  ET  DD      ET S+D   E +   SDD +SE  +   
Sbjct: 796  DSGDINSE--TGDATGEEPTETSPDD------ETQSNDETCESE--TSDDEQSETPSETE 845

Query: 48   DDLRSEQKETVSDD 7
            D    E  ET  DD
Sbjct: 846  DTTGDESSETSPDD 859


>ref|XP_001462032.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
           gi|124429869|emb|CAK94659.1| unnamed protein product
           [Paramecium tetraurelia]
          Length = 299

 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 33/154 (21%), Positives = 75/154 (48%)
 Frame = -2

Query: 468 LSIPGMLSSSSVRNELHLPKPLSNGDERESRETKNVCKKDEVGQSSEVGGSDQLPVERFG 289
           L +  ++S  +V +     KP+ +  + + ++ +   ++ +   + +  G  + P +  G
Sbjct: 8   LLLISLISCRAVNHLTEEKKPVDSSKKDDGKKEEPKKEETKKEDTKKDDGKKEEPKKDEG 67

Query: 288 KTESGDSSKTHSDPRQNDKADVEEISSEEPLSDHRRSEQKETVSDDHRSEQKETLSDDHR 109
           K E     +   D ++++K D      ++   D ++ E+K+   D+ + E+K+   DD +
Sbjct: 68  KKEEPKKEEAKKDEKKDEKKD----EKKDEKKDEKKDEKKDEKKDEKKDEKKDEKKDDKK 123

Query: 108 SEQKEIVSDDHKSEQKATVSDDLRSEQKETVSDD 7
            E+K+   D+ K E+K    DD + E+K+   DD
Sbjct: 124 DEKKDEKKDEKKDEKK----DDKKDEKKDEKKDD 153



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 36/130 (27%), Positives = 63/130 (48%), Gaps = 1/130 (0%)
 Frame = -2

Query: 393 DERESRETKNV-CKKDEVGQSSEVGGSDQLPVERFGKTESGDSSKTHSDPRQNDKADVEE 217
           DE +  E K    KKDE     +    D+   E+  K E  D  K   D ++++K D ++
Sbjct: 65  DEGKKEEPKKEEAKKDEKKDEKKDEKKDEKKDEK--KDEKKDEKK---DEKKDEKKDEKK 119

Query: 216 ISSEEPLSDHRRSEQKETVSDDHRSEQKETLSDDHRSEQKEIVSDDHKSEQKATVSDDLR 37
              ++   D ++ E+K+   DD + E+K+   DD + ++ E   DD K E+K    DD +
Sbjct: 120 DDKKDEKKDEKKDEKKDEKKDDKKDEKKDEKKDDKKKDENE-KKDDKKDEKKDEKKDDKK 178

Query: 36  SEQKETVSDD 7
            ++K+    D
Sbjct: 179 KDEKKDDKKD 188