BLASTX nr result

ID: Coptis23_contig00004931 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00004931
         (566 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002277528.2| PREDICTED: uncharacterized protein LOC100253...    76   3e-12
ref|XP_002525522.1| nucleic acid binding protein, putative [Rici...    69   5e-10
ref|XP_002325510.1| predicted protein [Populus trichocarpa] gi|2...    65   1e-08
ref|XP_003516741.1| PREDICTED: uncharacterized protein LOC100800...    64   2e-08
ref|XP_003537947.1| PREDICTED: uncharacterized protein LOC100786...    63   4e-08

>ref|XP_002277528.2| PREDICTED: uncharacterized protein LOC100253453 [Vitis vinifera]
          Length = 772

 Score = 76.3 bits (186), Expect = 3e-12
 Identities = 39/79 (49%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
 Frame = +1

Query: 10  YQGPADTGYSNAPTSAYGAPPSAQAGYVQPASNQPAYEQ--XXXXXXXXXXXXXXXXXFV 183
           YQG AD  Y++ P SAYGA PS Q GYVQP   QP+Y+Q                   + 
Sbjct: 691 YQGSADPTYNSGPASAYGAQPSGQPGYVQPTPTQPSYDQSIPAQSGGYGAVPATAPVGYG 750

Query: 184 KTLSPQPVYGQYDSTQMYG 240
           K+LSPQP Y QYD+TQMYG
Sbjct: 751 KSLSPQPGYPQYDATQMYG 769


>ref|XP_002525522.1| nucleic acid binding protein, putative [Ricinus communis]
           gi|223535201|gb|EEF36880.1| nucleic acid binding
           protein, putative [Ricinus communis]
          Length = 798

 Score = 68.9 bits (167), Expect = 5e-10
 Identities = 36/79 (45%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
 Frame = +1

Query: 10  YQGPADTGYSNAPTSAYGAPPSAQAGYVQPASNQPAYEQ---XXXXXXXXXXXXXXXXXF 180
           YQG  D  Y+  P SAY AP S Q GY QP   QP+Y+Q                    +
Sbjct: 716 YQGSQDPAYATGPGSAYAAPASGQQGYAQPTPTQPSYDQSVPQSTAYAAAAPPASAPVSY 775

Query: 181 VKTLSPQPVYGQYDSTQMY 237
            KT+SPQP Y QYDSTQMY
Sbjct: 776 GKTVSPQPGYPQYDSTQMY 794


>ref|XP_002325510.1| predicted protein [Populus trichocarpa] gi|222862385|gb|EEE99891.1|
           predicted protein [Populus trichocarpa]
          Length = 581

 Score = 64.7 bits (156), Expect = 1e-08
 Identities = 38/77 (49%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
 Frame = +1

Query: 10  YQGPADTGYSNAPTSAYGAPPSAQAGYVQPASNQPAYEQXXXXXXXXXXXXXXXXX-FVK 186
           YQG  D  Y +AP  AYGAP S Q GY QPA  QP+Y+Q                  + K
Sbjct: 504 YQGSQDPAYGSAP--AYGAPASQQ-GYAQPAPTQPSYDQSVPQSAGYGAAPATAPVGYGK 560

Query: 187 TLSPQPVYGQYDSTQMY 237
           T+SPQP Y QYDSTQMY
Sbjct: 561 TVSPQPGYPQYDSTQMY 577


>ref|XP_003516741.1| PREDICTED: uncharacterized protein LOC100800173 [Glycine max]
          Length = 793

 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 37/79 (46%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
 Frame = +1

Query: 10  YQGPADTGYSNAPTSAYG-APPSAQAGYVQPASNQPAYEQXXXXXXXXXXXXXXXXX-FV 183
           YQ P D GYS     AY  A PS Q GYVQP   Q  YEQ                  + 
Sbjct: 712 YQAPQDPGYSTGAAPAYSTAQPSGQPGYVQPTPTQTGYEQSNTQPAGYAAVPASASAVYG 771

Query: 184 KTLSPQPVYGQYDSTQMYG 240
           KTLSPQP   QYDSTQ+YG
Sbjct: 772 KTLSPQPAAYQYDSTQVYG 790


>ref|XP_003537947.1| PREDICTED: uncharacterized protein LOC100786134 [Glycine max]
          Length = 794

 Score = 62.8 bits (151), Expect = 4e-08
 Identities = 38/80 (47%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
 Frame = +1

Query: 10  YQGPADTGYSNAPTSAYG-APPSAQAGYVQPASNQPAYEQ-XXXXXXXXXXXXXXXXXFV 183
           YQ P D GYS     AY  A PS Q GYVQP   Q  YEQ                  + 
Sbjct: 712 YQAPQDPGYSTGAAPAYSTAQPSGQPGYVQPTPTQTGYEQSNTQPAGYAAVPASAPAAYG 771

Query: 184 KTLSPQP-VYGQYDSTQMYG 240
           KTLSPQP  Y QYDSTQ+YG
Sbjct: 772 KTLSPQPAAYPQYDSTQVYG 791


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