BLASTX nr result

ID: Coptis23_contig00004908 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00004908
         (466 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002301408.1| predicted protein [Populus trichocarpa] gi|2...    79   4e-13
ref|XP_003553787.1| PREDICTED: UPF0667 protein C1orf55 homolog [...    78   7e-13
emb|CBI40512.3| unnamed protein product [Vitis vinifera]               76   3e-12
ref|XP_002281690.1| PREDICTED: UPF0667 protein C1orf55 homolog [...    76   3e-12
ref|XP_003521808.1| PREDICTED: UPF0667 protein C1orf55 homolog [...    75   4e-12

>ref|XP_002301408.1| predicted protein [Populus trichocarpa] gi|222843134|gb|EEE80681.1|
           predicted protein [Populus trichocarpa]
          Length = 401

 Score = 79.0 bits (193), Expect = 4e-13
 Identities = 46/98 (46%), Positives = 65/98 (66%), Gaps = 5/98 (5%)
 Frame = -2

Query: 279 VESGVSEETVDQN--VSDCTTEVVDKSESSDNVIEANGSIENIAVE---NGDNTNTDKPL 115
           VE+ + EETV QN  V+   TE + ++E+ +   + N   ++   +   N  N + +KPL
Sbjct: 282 VEAQILEETVAQNANVACLKTEEISETEALEAERKENVGPDSQCPDASINEGNGDMEKPL 341

Query: 114 DFNDYNTAREMEVLGMERLKAELQARGLKCGGTLPERA 1
            F+++N+A E+EVLGMERLK ELQ RGLKCGGTL ERA
Sbjct: 342 IFDEFNSASELEVLGMERLKTELQVRGLKCGGTLQERA 379


>ref|XP_003553787.1| PREDICTED: UPF0667 protein C1orf55 homolog [Glycine max]
          Length = 453

 Score = 78.2 bits (191), Expect = 7e-13
 Identities = 48/103 (46%), Positives = 70/103 (67%), Gaps = 9/103 (8%)
 Frame = -2

Query: 282 DVESGVSEE---TVDQNVSDCTTEVVDKSESSDNVIEANGSIENIAVEN-GDNTNT---- 127
           D   GVS++   TV+Q ++   +E V  S    N +E +GS+E+ A  N G + +T    
Sbjct: 330 DCHGGVSDKFDGTVNQALNVMGSETV-ASAGESNDMEIDGSLEHKATVNEGSSPSTSVPV 388

Query: 126 -DKPLDFNDYNTAREMEVLGMERLKAELQARGLKCGGTLPERA 1
            ++PL+F+ +N+A E+EVLG+ERLK+ELQ+RGLKCGGTL ERA
Sbjct: 389 LEEPLNFDAFNSAAELEVLGLERLKSELQSRGLKCGGTLMERA 431


>emb|CBI40512.3| unnamed protein product [Vitis vinifera]
          Length = 253

 Score = 75.9 bits (185), Expect = 3e-12
 Identities = 51/117 (43%), Positives = 68/117 (58%), Gaps = 22/117 (18%)
 Frame = -2

Query: 285 LDVESGVSEETVDQNVSDCTTEVVDKSESSDNVIEANGS-IENIAVENGDN--------- 136
           ++ E G S+E    NV     EV+   +S+      NGS IE +A+++ DN         
Sbjct: 122 VEPEKGDSDEPKSGNV-----EVIGLPQSNSG--SENGSDIEKVAIDSEDNGVSESKPGV 174

Query: 135 -------TNTD-----KPLDFNDYNTAREMEVLGMERLKAELQARGLKCGGTLPERA 1
                   NTD     KPL+F+D+++A EMEVLG+ERLK+ELQ RGLKCGGTL ERA
Sbjct: 175 HEGEESVANTDTLDAGKPLNFDDFSSAAEMEVLGLERLKSELQERGLKCGGTLQERA 231


>ref|XP_002281690.1| PREDICTED: UPF0667 protein C1orf55 homolog [Vitis vinifera]
          Length = 441

 Score = 75.9 bits (185), Expect = 3e-12
 Identities = 51/117 (43%), Positives = 68/117 (58%), Gaps = 22/117 (18%)
 Frame = -2

Query: 285 LDVESGVSEETVDQNVSDCTTEVVDKSESSDNVIEANGS-IENIAVENGDN--------- 136
           ++ E G S+E    NV     EV+   +S+      NGS IE +A+++ DN         
Sbjct: 310 VEPEKGDSDEPKSGNV-----EVIGLPQSNSG--SENGSDIEKVAIDSEDNGVSESKPGV 362

Query: 135 -------TNTD-----KPLDFNDYNTAREMEVLGMERLKAELQARGLKCGGTLPERA 1
                   NTD     KPL+F+D+++A EMEVLG+ERLK+ELQ RGLKCGGTL ERA
Sbjct: 363 HEGEESVANTDTLDAGKPLNFDDFSSAAEMEVLGLERLKSELQERGLKCGGTLQERA 419


>ref|XP_003521808.1| PREDICTED: UPF0667 protein C1orf55 homolog [Glycine max]
          Length = 455

 Score = 75.5 bits (184), Expect = 4e-12
 Identities = 46/117 (39%), Positives = 67/117 (57%), Gaps = 24/117 (20%)
 Frame = -2

Query: 279 VESGVSEETVDQNVSDCTTEVVDK------------------SESSDNVIEANGSIENIA 154
           V +G++ E  D    DC   V DK                  S    N +E +GS+E+ A
Sbjct: 319 VVAGINAE--DNGYQDCYVGVPDKFDGAVNQASTVMGSETVASAGESNYMEIDGSLEHKA 376

Query: 153 VENGDNTNT------DKPLDFNDYNTAREMEVLGMERLKAELQARGLKCGGTLPERA 1
             N +++ +      ++PL+F+ +N+A E+EVLG+ERLK+ELQ+RGLKCGGTL ERA
Sbjct: 377 AVNEESSPSTSVPVLEEPLNFDAFNSAAELEVLGLERLKSELQSRGLKCGGTLKERA 433


Top