BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00004815
         (925 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002279589.1| PREDICTED: pentatricopeptide repeat-containi...   199   1e-48
ref|XP_002527150.1| pentatricopeptide repeat-containing protein,...   198   1e-48
ref|XP_002884041.1| binding protein [Arabidopsis lyrata subsp. l...   177   2e-42
ref|NP_179305.2| pentatricopeptide repeat-containing protein [Ar...   175   2e-41
ref|XP_003530995.1| PREDICTED: pentatricopeptide repeat-containi...   171   2e-40

>ref|XP_002279589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g17140
            [Vitis vinifera] gi|297744485|emb|CBI37747.3| unnamed
            protein product [Vitis vinifera]
          Length = 878

 Score =  199 bits (505), Expect = 1e-48
 Identities = 99/171 (57%), Positives = 122/171 (71%)
 Frame = -2

Query: 921  IMLNELLAGGKTLEANQVFIAAMDRGFDVTGFSYKDLIEGLCNEEKLKEARSTIHEMIDK 742
            +M NELL GG+  EA ++F AA+DR FD+  F Y DLIE LC +E L+ A   +H+MIDK
Sbjct: 707  LMFNELLIGGEVSEAKELFDAALDRCFDLGNFQYNDLIEKLCKDEMLENASDILHKMIDK 766

Query: 741  EYQFDPASFLPLIDALGKNGNKDEADKLAEIMMGMASDGRAMKRTHHKEPNKNTLNRGKP 562
             Y+FDPASF+P+ID LGK G K +AD+LAE MM MAS+G    +    E   N   R K 
Sbjct: 767  GYRFDPASFMPVIDGLGKRGKKHDADELAERMMDMASEGMVENKITRNESAFNRQKRNK- 825

Query: 561  QTDGNDWQTILNRDDGSGIAVKALKRVQKGWGQGIISSLQSQKREIPDYWE 409
               G+DWQTI++RDDGSG+A+KALKRVQKGWGQG ISSLQ QK +  DYWE
Sbjct: 826  -FSGSDWQTIIHRDDGSGLALKALKRVQKGWGQGSISSLQPQKNDFLDYWE 875


>ref|XP_002527150.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223533489|gb|EEF35232.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 874

 Score =  198 bits (504), Expect = 1e-48
 Identities = 101/174 (58%), Positives = 123/174 (70%), Gaps = 1/174 (0%)
 Frame = -2

Query: 921  IMLNELLAGGKTLEANQVFIAAMDRGFDVTGFSYKDLIEGLCNEEKLKEARSTIHEMIDK 742
            +M NELL GGK  EA ++F  A+DR FD+  F YKDLI+ LC +EKL+ A   +H +IDK
Sbjct: 703  LMFNELLVGGKVAEAKELFETALDRSFDIGNFLYKDLIDRLCKDEKLEAASDVLHRLIDK 762

Query: 741  EYQFDPASFLPLIDALGKNGNKDEADKLAEIMMGMASDGRAMKRTHHKEPN-KNTLNRGK 565
             YQFDPASF+P+ID  GK GNK  AD+LAE MM MAS+     + +   PN K  + R K
Sbjct: 763  GYQFDPASFMPVIDGFGKMGNKHVADELAERMMEMASESNKENKAY---PNVKGHILRNK 819

Query: 564  PQTDGNDWQTILNRDDGSGIAVKALKRVQKGWGQGIISSLQSQKREIPDYWEDS 403
             +  GNDW  I++RDDGSGIA+KALKRVQKGWGQG ISSLQ QK E  DYW+ S
Sbjct: 820  NKDAGNDWPIIVHRDDGSGIALKALKRVQKGWGQGSISSLQPQKLEFFDYWDGS 873


>ref|XP_002884041.1| binding protein [Arabidopsis lyrata subsp. lyrata]
            gi|297329881|gb|EFH60300.1| binding protein [Arabidopsis
            lyrata subsp. lyrata]
          Length = 874

 Score =  177 bits (450), Expect = 2e-42
 Identities = 89/173 (51%), Positives = 121/173 (69%), Gaps = 1/173 (0%)
 Frame = -2

Query: 921  IMLNELLAGGKTLEANQVFIAAMDRGFDVTGFSYKDLIEGLCNEEKLKEARSTIHEMIDK 742
            +M NELLA G+ L+A ++  A +DRGF++  F YKDL+  LC +++L+ A   +H+MIDK
Sbjct: 703  LMFNELLAAGQLLKATELLEAVLDRGFELGTFLYKDLVVSLCKKDELEVASGILHKMIDK 762

Query: 741  EYQFDPASFLPLIDALGKNGNKDEADKLAEIMMGMASDGRAMKRTHHKEPNKNTLNRGK- 565
             Y FDPA+ +P+ID LGK GNK EA+  AE MM MAS G    +    +PN   +++ K 
Sbjct: 763  GYGFDPAALMPVIDGLGKMGNKKEANNFAEKMMEMASVGEVANKV---DPNATDIHQKKH 819

Query: 564  PQTDGNDWQTILNRDDGSGIAVKALKRVQKGWGQGIISSLQSQKREIPDYWED 406
             +  GN+WQ IL+RDDGSGIA+K+L RV+KGWGQG ISS Q Q+ +  DYWED
Sbjct: 820  NKYSGNNWQNILHRDDGSGIALKSLSRVKKGWGQGDISSFQPQRVDYLDYWED 872


>ref|NP_179305.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
            gi|122223754|sp|Q0WPZ6.1|PP158_ARATH RecName:
            Full=Pentatricopeptide repeat-containing protein
            At2g17140 gi|110737729|dbj|BAF00803.1| hypothetical
            protein [Arabidopsis thaliana]
            gi|330251496|gb|AEC06590.1| pentatricopeptide
            repeat-containing protein [Arabidopsis thaliana]
          Length = 874

 Score =  175 bits (443), Expect = 2e-41
 Identities = 86/173 (49%), Positives = 121/173 (69%), Gaps = 1/173 (0%)
 Frame = -2

Query: 921  IMLNELLAGGKTLEANQVFIAAMDRGFDVTGFSYKDLIEGLCNEEKLKEARSTIHEMIDK 742
            +M NELLA G+ L+A ++  A +DRGF++  F YKDL+E LC +++L+ A   +H+MID+
Sbjct: 703  LMFNELLAAGQLLKATELLEAVLDRGFELGTFLYKDLVESLCKKDELEVASGILHKMIDR 762

Query: 741  EYQFDPASFLPLIDALGKNGNKDEADKLAEIMMGMASDGRAMKRTHHKEPNKNTLNRGK- 565
             Y FDPA+ +P+ID LGK GNK EA+  A+ MM MAS G    +    +PN   +++ K 
Sbjct: 763  GYGFDPAALMPVIDGLGKMGNKKEANSFADKMMEMASVGEVANKV---DPNARDIHQKKH 819

Query: 564  PQTDGNDWQTILNRDDGSGIAVKALKRVQKGWGQGIISSLQSQKREIPDYWED 406
             +  GN+WQ IL+RDDGSGIA+++L RV+KGWGQG ISS Q  + +  DYWED
Sbjct: 820  NKNGGNNWQNILHRDDGSGIALRSLSRVKKGWGQGDISSFQPPRVDYLDYWED 872


>ref|XP_003530995.1| PREDICTED: pentatricopeptide repeat-containing protein At2g17140-like
            [Glycine max]
          Length = 875

 Score =  171 bits (434), Expect = 2e-40
 Identities = 89/174 (51%), Positives = 121/174 (69%), Gaps = 1/174 (0%)
 Frame = -2

Query: 921  IMLNELLAGGKTLEANQVFIAAMDRGFDVTGFSYKDLIEGLCNEEKLKEARSTIHEMIDK 742
            +M NELLAGG+  EA ++F  ++DR   +  F YKDLI  LC +E+L +A S ++++IDK
Sbjct: 704  LMFNELLAGGQLSEAKELFEVSLDRYLTLKNFMYKDLIARLCQDERLADANSLLYKLIDK 763

Query: 741  EYQFDPASFLPLIDALGKNGNKDEADKLAEIMMGMASDGRAMKRTHHKEPNKNTLNRGKP 562
             Y FD ASF+P+ID L K GNK +AD+LA+ MM +  + R + RT+    N+  +  GK 
Sbjct: 764  GYGFDHASFMPVIDGLSKRGNKRQADELAKRMMELELEDRPVDRTY---SNRKRVIPGKL 820

Query: 561  QTD-GNDWQTILNRDDGSGIAVKALKRVQKGWGQGIISSLQSQKREIPDYWEDS 403
              D G+DWQ I+NRD GSGIA+K LKRVQKGWGQG ISSLQ Q+ +  DY++ S
Sbjct: 821  LKDGGSDWQDIINRDAGSGIALKTLKRVQKGWGQGSISSLQPQQNDFLDYYDGS 874