BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00004801
         (472 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ADE80751.1| cold shock domain protein 1 [Eutrema salsugineum]      112   3e-23
gb|ADE80750.1| cold shock domain protein 3 [Eutrema salsugineum]      110   1e-22
ref|XP_002886133.1| hypothetical protein ARALYDRAFT_480687 [Arab...   106   2e-21
ref|NP_565427.1| cold shock domain protein 3 [Arabidopsis thalia...   106   2e-21
ref|XP_003547928.1| PREDICTED: DNA-binding protein HEXBP-like [G...   104   7e-21

>gb|ADE80751.1| cold shock domain protein 1 [Eutrema salsugineum]
          Length = 263

 Score =  112 bits (280), Expect = 3e-23
 Identities = 70/169 (41%), Positives = 84/169 (49%), Gaps = 33/169 (19%)
 Frame = +2

Query: 62  ATGIVKWFNGKKGYGFITPDNKDTEDLFVHQSSIDSDGYRTLSEGESVEFQVELANDGKK 241
           +TG V WFN  KGYGFITPD+ D E+LFVHQS+I S+G+R+L+ G+SVEF V    DG K
Sbjct: 11  STGKVNWFNDSKGYGFITPDD-DGEELFVHQSAILSEGFRSLTVGDSVEFAVTQGTDG-K 68

Query: 242 TQAVNV-------------------LRKGKXXXXXXXXSIIIE--------------CYT 322
           T+AVNV                    R+G           + +              CYT
Sbjct: 69  TKAVNVTAPGGAPLHRKEISSRGNGARRGGSCYHCGEVGHMAKDCSSSDRGDRSSGGCYT 128

Query: 323 CSQVGHIARDCPLKKKILATDGVVANGAVIRCYNCKRIGHVARDCLVKS 469
           C   GH ARDC  K       G    GA   CYNC   GH ARDC+ KS
Sbjct: 129 CGDTGHFARDCVQKSSGNGGSGGERGGAGGECYNCGNTGHFARDCVQKS 177


>gb|ADE80750.1| cold shock domain protein 3 [Eutrema salsugineum]
          Length = 295

 Score =  110 bits (275), Expect = 1e-22
 Identities = 63/135 (46%), Positives = 80/135 (59%), Gaps = 3/135 (2%)
 Frame = +2

Query: 62  ATGIVKWFNGKKGYGFITPDNKDTEDLFVHQSSIDSDGYRTLSEGESVEFQVELANDGKK 241
           +TG V WF+  KGYGFITPD+   E LFVHQSSI SDG+R+L+ GESVE+ + L +DG K
Sbjct: 11  STGKVNWFSDGKGYGFITPDDGGDE-LFVHQSSIVSDGFRSLTVGESVEYAITLGSDG-K 68

Query: 242 TQAVNVLRKGKXXXXXXXXSIIIE---CYTCSQVGHIARDCPLKKKILATDGVVANGAVI 412
           T+AV V   G         S       C+ C ++GH+A+DC   K      G   +G   
Sbjct: 69  TKAVEVTAPGGGSLKNKEISSRGNGGGCFNCGEIGHMAKDCVGGKSF--GGGGRRSGGEG 126

Query: 413 RCYNCKRIGHVARDC 457
            CYNC  +GH ARDC
Sbjct: 127 SCYNCGNVGHFARDC 141


>ref|XP_002886133.1| hypothetical protein ARALYDRAFT_480687 [Arabidopsis lyrata subsp.
           lyrata] gi|297331973|gb|EFH62392.1| hypothetical protein
           ARALYDRAFT_480687 [Arabidopsis lyrata subsp. lyrata]
          Length = 299

 Score =  106 bits (265), Expect = 2e-21
 Identities = 63/135 (46%), Positives = 78/135 (57%), Gaps = 5/135 (3%)
 Frame = +2

Query: 68  GIVKWFNGKKGYGFITPDNKDTEDLFVHQSSIDSDGYRTLSEGESVEFQVELANDGKKTQ 247
           G V WF   KGYGFITPD+   E+LFVHQSSI SDGYR+L+ GESVE+ + L +DG KT+
Sbjct: 11  GKVNWFGDGKGYGFITPDDGG-EELFVHQSSIVSDGYRSLTVGESVEYSITLGSDG-KTK 68

Query: 248 AVNVLRKGKXXXXXXXXSII---IECYTCSQVGHIARDCP--LKKKILATDGVVANGAVI 412
           AVNV   G         S       C+ C +VGH+A+DC      +     G   +G   
Sbjct: 69  AVNVTAPGGGSLNKKENSSRGNGGSCFNCGEVGHMAKDCDGGGGGRSYGGGGGRRSGGEG 128

Query: 413 RCYNCKRIGHVARDC 457
            CY C  +GH ARDC
Sbjct: 129 TCYVCGDVGHFARDC 143


>ref|NP_565427.1| cold shock domain protein 3 [Arabidopsis thaliana]
           gi|75165198|sp|Q94C69.1|CSP3_ARATH RecName: Full=Cold
           shock domain-containing protein 3; Short=AtCSP3
           gi|14334920|gb|AAK59638.1| putative glycine-rich,
           zinc-finger DNA-binding protein [Arabidopsis thaliana]
           gi|17104541|gb|AAL34159.1| putative glycine-rich,
           zinc-finger DNA-binding protein [Arabidopsis thaliana]
           gi|148726892|dbj|BAF63841.1| cold shock domain protein 3
           [Arabidopsis thaliana] gi|330251603|gb|AEC06697.1| cold
           shock domain protein 3 [Arabidopsis thaliana]
          Length = 301

 Score =  106 bits (264), Expect = 2e-21
 Identities = 61/135 (45%), Positives = 79/135 (58%), Gaps = 5/135 (3%)
 Frame = +2

Query: 68  GIVKWFNGKKGYGFITPDNKDTEDLFVHQSSIDSDGYRTLSEGESVEFQVELANDGKKTQ 247
           G V WF+  KGYGFITPD+   E+LFVHQSSI SDG+R+L+ GESVE+++ L +DG KT+
Sbjct: 13  GKVSWFSDGKGYGFITPDDGG-EELFVHQSSIVSDGFRSLTLGESVEYEIALGSDG-KTK 70

Query: 248 AVNVLRKGKXXXXXXXXSII---IECYTCSQVGHIARDCP--LKKKILATDGVVANGAVI 412
           A+ V   G         S       C+ C +VGH+A+DC      K     G   +G   
Sbjct: 71  AIEVTAPGGGSLNKKENSSRGSGGNCFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGEG 130

Query: 413 RCYNCKRIGHVARDC 457
            CY C  +GH ARDC
Sbjct: 131 ECYMCGDVGHFARDC 145


>ref|XP_003547928.1| PREDICTED: DNA-binding protein HEXBP-like [Glycine max]
          Length = 250

 Score =  104 bits (260), Expect = 7e-21
 Identities = 62/149 (41%), Positives = 74/149 (49%), Gaps = 17/149 (11%)
 Frame = +2

Query: 65  TGIVKWFNGKKGYGFITPDNKDTEDLFVHQSSIDSDGYRTLSEGESVEFQVELANDGKKT 244
           TG+V+WFN  KG+GFI PD+   EDLFVHQSSI SDGYRTL EG+ VEF +    D  KT
Sbjct: 7   TGVVQWFNNGKGFGFIKPDDGG-EDLFVHQSSIRSDGYRTLLEGDRVEFAIA-TGDNDKT 64

Query: 245 QAVNVL-----------------RKGKXXXXXXXXSIIIECYTCSQVGHIARDCPLKKKI 373
           +AV+V                    G              CY C   GH+ARDC      
Sbjct: 65  KAVDVTGVDGAPLQPRASAANNRAGGSGFGARRNGGSGAACYQCGDFGHLARDCNRSSNT 124

Query: 374 LATDGVVANGAVIRCYNCKRIGHVARDCL 460
               G    G    C+NC   GH+ARDC+
Sbjct: 125 GGGGGGSGGG----CFNCGGFGHLARDCV 149