BLASTX nr result
ID: Coptis23_contig00004793
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00004793
(800 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|JAA53130.1| Putative vesicle coat complex copi beta' subunit,... 224 5e-71
gb|EAZ08188.1| hypothetical protein OsI_30447 [Oryza sativa Indi... 261 5e-68
ref|NP_001062612.1| Os09g0127800 [Oryza sativa Japonica Group] g... 261 5e-68
ref|XP_002321558.1| predicted protein [Populus trichocarpa] gi|2... 260 8e-68
ref|XP_002529504.1| coatomer alpha subunit, putative [Ricinus co... 259 1e-67
>gb|JAA53130.1| Putative vesicle coat complex copi beta' subunit, partial [Desmodus
rotundus]
Length = 1198
Score = 224 bits (571), Expect(2) = 5e-71
Identities = 103/149 (69%), Positives = 124/149 (83%), Gaps = 7/149 (4%)
Frame = -3
Query: 603 DMFGGVDAVVKYVLEGHDRGVNWASFHPTLPLIVSGADDRQIKLWRMNDMKAWEVDTLRG 424
D+FG DAVVK+VLEGHDRGVNWA+FHPT+PLIVSGADDRQ+K+WRMN+ KAWEVDT RG
Sbjct: 162 DLFGTTDAVVKHVLEGHDRGVNWAAFHPTMPLIVSGADDRQVKIWRMNESKAWEVDTCRG 221
Query: 423 HTNTVSCVMFHAKHDIIVSNSEDKSICVWDVTKRIGIQTFRREHDRFWVLAFHPEMNLIV 244
H N VSC +FH + ++I+SNSEDKSI VWD++KR G+QTFRR+HDRFWVLA HP +NL
Sbjct: 222 HYNNVSCAVFHPRQELILSNSEDKSIRVWDMSKRTGVQTFRRDHDRFWVLAAHPNLNLFA 281
Query: 243 A-------VFKLERERNAFSVSGVLLYYV 178
A VFKLERER A++V G +L+YV
Sbjct: 282 AGHDGGMIVFKLERERPAYAVHGNMLHYV 310
Score = 70.5 bits (171), Expect(2) = 5e-71
Identities = 36/57 (63%), Positives = 42/57 (73%), Gaps = 1/57 (1%)
Frame = -2
Query: 799 IGALRKKTVSP-ADDSLRLSEMSSDMFGGVDAVVKYVLEGHDRGVNWASFHPTLPLI 632
I LRKK +SP A +S D+FG DAVVK+VLEGHDRGVNWA+FHPT+PLI
Sbjct: 97 ISGLRKKNLSPGAVESDVRGITGVDLFGTTDAVVKHVLEGHDRGVNWAAFHPTMPLI 153
Score = 64.7 bits (156), Expect = 2e-08
Identities = 27/33 (81%), Positives = 31/33 (93%)
Frame = -2
Query: 730 DMFGGVDAVVKYVLEGHDRGVNWASFHPTLPLI 632
D+FG DAVVK+VLEGHDRGVNWA+FHPT+PLI
Sbjct: 162 DLFGTTDAVVKHVLEGHDRGVNWAAFHPTMPLI 194
Score = 58.5 bits (140), Expect = 2e-06
Identities = 28/81 (34%), Positives = 43/81 (53%)
Frame = -3
Query: 570 YVLEGHDRGVNWASFHPTLPLIVSGADDRQIKLWRMNDMKAWEVDTLRGHTNTVSCVMFH 391
+ L GH + FH P I+S +DD+ I++W V L GH + V C FH
Sbjct: 20 FTLLGHLDYIRTTFFHHEYPWILSASDDQTIRVWNWQSRTC--VCVLTGHNHYVMCAQFH 77
Query: 390 AKHDIIVSNSEDKSICVWDVT 328
D++VS S D+++ VWD++
Sbjct: 78 PSEDLVVSASLDQTVRVWDIS 98
>gb|EAZ08188.1| hypothetical protein OsI_30447 [Oryza sativa Indica Group]
Length = 1218
Score = 261 bits (666), Expect(2) = 5e-68
Identities = 126/155 (81%), Positives = 136/155 (87%), Gaps = 7/155 (4%)
Frame = -3
Query: 621 LSEMSSDMFGGVDAVVKYVLEGHDRGVNWASFHPTLPLIVSGADDRQIKLWRMNDMKAWE 442
L++M++D+FGGVDAVVKYVLEGHDRGVNWASFHPTLPLIVSGADDRQ+KLWRMND KAWE
Sbjct: 181 LTQMNTDLFGGVDAVVKYVLEGHDRGVNWASFHPTLPLIVSGADDRQVKLWRMNDTKAWE 240
Query: 441 VDTLRGHTNTVSCVMFHAKHDIIVSNSEDKSICVWDVTKRIGIQTFRREHDRFWVLAFHP 262
VDTLRGH N VSCVMFHAK DIIVSNSEDKSI VWD TKR GIQTFRREHDRFW+LA HP
Sbjct: 241 VDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDATKRTGIQTFRREHDRFWILAAHP 300
Query: 261 EMNLIVA-------VFKLERERNAFSVSGVLLYYV 178
EMNL+ A VFKLERER AFSVSG ++YV
Sbjct: 301 EMNLLAAGHDNGMIVFKLERERPAFSVSGDTVFYV 335
Score = 23.9 bits (50), Expect(2) = 5e-68
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -2
Query: 694 VLEGHDRGVNWASFHPTLPLI 632
VL GH+ V ASFHP L+
Sbjct: 130 VLTGHNHYVMCASFHPKEDLV 150
Score = 107 bits (268), Expect = 2e-21
Identities = 50/56 (89%), Positives = 55/56 (98%)
Frame = -2
Query: 799 IGALRKKTVSPADDSLRLSEMSSDMFGGVDAVVKYVLEGHDRGVNWASFHPTLPLI 632
IGALRKKTVSPADD LRL++M++D+FGGVDAVVKYVLEGHDRGVNWASFHPTLPLI
Sbjct: 164 IGALRKKTVSPADDILRLTQMNTDLFGGVDAVVKYVLEGHDRGVNWASFHPTLPLI 219
Score = 69.3 bits (168), Expect = 9e-10
Identities = 36/105 (34%), Positives = 56/105 (53%)
Frame = -3
Query: 555 HDRGVNWASFHPTLPLIVSGADDRQIKLWRMNDMKAWEVDTLRGHTNTVSCVMFHAKHDI 376
HD V FH T PL VSG DD +IK+W + + TL GH + + V FH ++
Sbjct: 50 HDGPVRGVHFHATQPLFVSGGDDYKIKVWNYKTHRC--LFTLHGHLDYIRTVQFHHEYPW 107
Query: 375 IVSNSEDKSICVWDVTKRIGIQTFRREHDRFWVLAFHPEMNLIVA 241
IVS S+D++I +W+ R + + +FHP+ +L+V+
Sbjct: 108 IVSASDDQTIRIWNWQSRTCVAVLTGHNHYVMCASFHPKEDLVVS 152
Score = 63.5 bits (153), Expect = 5e-08
Identities = 30/80 (37%), Positives = 43/80 (53%)
Frame = -3
Query: 570 YVLEGHDRGVNWASFHPTLPLIVSGADDRQIKLWRMNDMKAWEVDTLRGHTNTVSCVMFH 391
+ L GH + FH P IVS +DD+ I++W V L GH + V C FH
Sbjct: 87 FTLHGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTC--VAVLTGHNHYVMCASFH 144
Query: 390 AKHDIIVSNSEDKSICVWDV 331
K D++VS S D+++ VWD+
Sbjct: 145 PKEDLVVSASLDQTVRVWDI 164
>ref|NP_001062612.1| Os09g0127800 [Oryza sativa Japonica Group]
gi|122234492|sp|Q0J3D9.1|COPA3_ORYSJ RecName:
Full=Coatomer subunit alpha-3; AltName: Full=Alpha-coat
protein 3; Short=Alpha-COP 3
gi|113630845|dbj|BAF24526.1| Os09g0127800 [Oryza sativa
Japonica Group] gi|125604780|gb|EAZ43816.1| hypothetical
protein OsJ_28435 [Oryza sativa Japonica Group]
Length = 1218
Score = 261 bits (666), Expect(2) = 5e-68
Identities = 126/155 (81%), Positives = 136/155 (87%), Gaps = 7/155 (4%)
Frame = -3
Query: 621 LSEMSSDMFGGVDAVVKYVLEGHDRGVNWASFHPTLPLIVSGADDRQIKLWRMNDMKAWE 442
L++M++D+FGGVDAVVKYVLEGHDRGVNWASFHPTLPLIVSGADDRQ+KLWRMND KAWE
Sbjct: 181 LTQMNTDLFGGVDAVVKYVLEGHDRGVNWASFHPTLPLIVSGADDRQVKLWRMNDTKAWE 240
Query: 441 VDTLRGHTNTVSCVMFHAKHDIIVSNSEDKSICVWDVTKRIGIQTFRREHDRFWVLAFHP 262
VDTLRGH N VSCVMFHAK DIIVSNSEDKSI VWD TKR GIQTFRREHDRFW+LA HP
Sbjct: 241 VDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDATKRTGIQTFRREHDRFWILAAHP 300
Query: 261 EMNLIVA-------VFKLERERNAFSVSGVLLYYV 178
EMNL+ A VFKLERER AFSVSG ++YV
Sbjct: 301 EMNLLAAGHDNGMIVFKLERERPAFSVSGDTVFYV 335
Score = 23.9 bits (50), Expect(2) = 5e-68
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -2
Query: 694 VLEGHDRGVNWASFHPTLPLI 632
VL GH+ V ASFHP L+
Sbjct: 130 VLTGHNHYVMCASFHPKEDLV 150
Score = 107 bits (268), Expect = 2e-21
Identities = 50/56 (89%), Positives = 55/56 (98%)
Frame = -2
Query: 799 IGALRKKTVSPADDSLRLSEMSSDMFGGVDAVVKYVLEGHDRGVNWASFHPTLPLI 632
IGALRKKTVSPADD LRL++M++D+FGGVDAVVKYVLEGHDRGVNWASFHPTLPLI
Sbjct: 164 IGALRKKTVSPADDILRLTQMNTDLFGGVDAVVKYVLEGHDRGVNWASFHPTLPLI 219
Score = 69.3 bits (168), Expect = 9e-10
Identities = 36/105 (34%), Positives = 56/105 (53%)
Frame = -3
Query: 555 HDRGVNWASFHPTLPLIVSGADDRQIKLWRMNDMKAWEVDTLRGHTNTVSCVMFHAKHDI 376
HD V FH T PL VSG DD +IK+W + + TL GH + + V FH ++
Sbjct: 50 HDGPVRGVHFHATQPLFVSGGDDYKIKVWNYKTHRC--LFTLHGHLDYIRTVQFHHEYPW 107
Query: 375 IVSNSEDKSICVWDVTKRIGIQTFRREHDRFWVLAFHPEMNLIVA 241
IVS S+D++I +W+ R + + +FHP+ +L+V+
Sbjct: 108 IVSASDDQTIRIWNWQSRTCVAVLTGHNHYVMCASFHPKEDLVVS 152
Score = 63.5 bits (153), Expect = 5e-08
Identities = 30/80 (37%), Positives = 43/80 (53%)
Frame = -3
Query: 570 YVLEGHDRGVNWASFHPTLPLIVSGADDRQIKLWRMNDMKAWEVDTLRGHTNTVSCVMFH 391
+ L GH + FH P IVS +DD+ I++W V L GH + V C FH
Sbjct: 87 FTLHGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTC--VAVLTGHNHYVMCASFH 144
Query: 390 AKHDIIVSNSEDKSICVWDV 331
K D++VS S D+++ VWD+
Sbjct: 145 PKEDLVVSASLDQTVRVWDI 164
>ref|XP_002321558.1| predicted protein [Populus trichocarpa] gi|222868554|gb|EEF05685.1|
predicted protein [Populus trichocarpa]
Length = 1218
Score = 260 bits (664), Expect(2) = 8e-68
Identities = 125/154 (81%), Positives = 136/154 (88%), Gaps = 7/154 (4%)
Frame = -3
Query: 621 LSEMSSDMFGGVDAVVKYVLEGHDRGVNWASFHPTLPLIVSGADDRQIKLWRMNDMKAWE 442
L++M+SD+FGGVDAVVKYVLEGHDRGVNWA+FHPTLPLIVSGADDRQ+KLWRMND KAWE
Sbjct: 181 LTQMNSDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNDTKAWE 240
Query: 441 VDTLRGHTNTVSCVMFHAKHDIIVSNSEDKSICVWDVTKRIGIQTFRREHDRFWVLAFHP 262
VDTLRGH N VSCVMFHAK DIIVSNSEDKSI VWDVTKR G+QTFRREHDRFW+LA HP
Sbjct: 241 VDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHP 300
Query: 261 EMNLIVA-------VFKLERERNAFSVSGVLLYY 181
EMNL+ A VFKLERER AF+VSG L+Y
Sbjct: 301 EMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFY 334
Score = 23.9 bits (50), Expect(2) = 8e-68
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -2
Query: 694 VLEGHDRGVNWASFHPTLPLI 632
VL GH+ V ASFHP L+
Sbjct: 130 VLTGHNHYVMCASFHPKEDLV 150
Score = 107 bits (266), Expect = 4e-21
Identities = 49/56 (87%), Positives = 55/56 (98%)
Frame = -2
Query: 799 IGALRKKTVSPADDSLRLSEMSSDMFGGVDAVVKYVLEGHDRGVNWASFHPTLPLI 632
IGALRKKTVSPADD +RL++M+SD+FGGVDAVVKYVLEGHDRGVNWA+FHPTLPLI
Sbjct: 164 IGALRKKTVSPADDIMRLTQMNSDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLI 219
Score = 66.6 bits (161), Expect = 6e-09
Identities = 36/105 (34%), Positives = 56/105 (53%)
Frame = -3
Query: 555 HDRGVNWASFHPTLPLIVSGADDRQIKLWRMNDMKAWEVDTLRGHTNTVSCVMFHAKHDI 376
HD V FH + PL VSG DD +IK+W + + TL GH + + V FH ++
Sbjct: 50 HDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKLHRC--LFTLLGHLDYIRTVQFHHEYPW 107
Query: 375 IVSNSEDKSICVWDVTKRIGIQTFRREHDRFWVLAFHPEMNLIVA 241
IVS S+D++I +W+ R I + +FHP+ +L+V+
Sbjct: 108 IVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVS 152
Score = 62.8 bits (151), Expect = 9e-08
Identities = 29/80 (36%), Positives = 43/80 (53%)
Frame = -3
Query: 570 YVLEGHDRGVNWASFHPTLPLIVSGADDRQIKLWRMNDMKAWEVDTLRGHTNTVSCVMFH 391
+ L GH + FH P IVS +DD+ I++W + L GH + V C FH
Sbjct: 87 FTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTC--ISVLTGHNHYVMCASFH 144
Query: 390 AKHDIIVSNSEDKSICVWDV 331
K D++VS S D+++ VWD+
Sbjct: 145 PKEDLVVSASLDQTVRVWDI 164
>ref|XP_002529504.1| coatomer alpha subunit, putative [Ricinus communis]
gi|223531020|gb|EEF32873.1| coatomer alpha subunit,
putative [Ricinus communis]
Length = 1217
Score = 259 bits (663), Expect(2) = 1e-67
Identities = 126/155 (81%), Positives = 136/155 (87%), Gaps = 7/155 (4%)
Frame = -3
Query: 621 LSEMSSDMFGGVDAVVKYVLEGHDRGVNWASFHPTLPLIVSGADDRQIKLWRMNDMKAWE 442
LS+M++D+FGGVDAVVKYVLEGHDRGVNWASFHPTLPLIVSGADDRQ+KLWRMND KAWE
Sbjct: 181 LSQMNTDIFGGVDAVVKYVLEGHDRGVNWASFHPTLPLIVSGADDRQVKLWRMNDTKAWE 240
Query: 441 VDTLRGHTNTVSCVMFHAKHDIIVSNSEDKSICVWDVTKRIGIQTFRREHDRFWVLAFHP 262
VD LRGH N VSCVMFHAK DIIVSNSEDKSI VWDVTKR+GIQ FRREHDRFW+LA HP
Sbjct: 241 VDALRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRMGIQNFRREHDRFWILASHP 300
Query: 261 EMNLIVA-------VFKLERERNAFSVSGVLLYYV 178
EMNL+ A VFKLERER AF+VSG L+YV
Sbjct: 301 EMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYV 335
Score = 23.9 bits (50), Expect(2) = 1e-67
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -2
Query: 694 VLEGHDRGVNWASFHPTLPLI 632
VL GH+ V ASFHP L+
Sbjct: 130 VLTGHNHYVMCASFHPKEDLV 150
Score = 108 bits (270), Expect = 1e-21
Identities = 51/56 (91%), Positives = 55/56 (98%)
Frame = -2
Query: 799 IGALRKKTVSPADDSLRLSEMSSDMFGGVDAVVKYVLEGHDRGVNWASFHPTLPLI 632
IGALRKKTVSPADD LRLS+M++D+FGGVDAVVKYVLEGHDRGVNWASFHPTLPLI
Sbjct: 164 IGALRKKTVSPADDILRLSQMNTDIFGGVDAVVKYVLEGHDRGVNWASFHPTLPLI 219
Score = 67.4 bits (163), Expect = 3e-09
Identities = 36/105 (34%), Positives = 57/105 (54%)
Frame = -3
Query: 555 HDRGVNWASFHPTLPLIVSGADDRQIKLWRMNDMKAWEVDTLRGHTNTVSCVMFHAKHDI 376
HD V +FH + PL VSG DD +IK+W + + TL GH + + V FH ++
Sbjct: 50 HDGPVRGVNFHNSQPLFVSGGDDYKIKVWNYKMHRC--LFTLLGHLDYIRTVQFHHEYPW 107
Query: 375 IVSNSEDKSICVWDVTKRIGIQTFRREHDRFWVLAFHPEMNLIVA 241
IVS S+D++I +W+ R I + +FHP+ +L+V+
Sbjct: 108 IVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVS 152
Score = 62.8 bits (151), Expect = 9e-08
Identities = 29/80 (36%), Positives = 43/80 (53%)
Frame = -3
Query: 570 YVLEGHDRGVNWASFHPTLPLIVSGADDRQIKLWRMNDMKAWEVDTLRGHTNTVSCVMFH 391
+ L GH + FH P IVS +DD+ I++W + L GH + V C FH
Sbjct: 87 FTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTC--ISVLTGHNHYVMCASFH 144
Query: 390 AKHDIIVSNSEDKSICVWDV 331
K D++VS S D+++ VWD+
Sbjct: 145 PKEDLVVSASLDQTVRVWDI 164