BLASTX nr result
ID: Coptis23_contig00004724
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis23_contig00004724 (1979 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CCA66040.1| hypothetical protein [Beta vulgaris subsp. vulga... 173 2e-71 emb|CCA66050.1| hypothetical protein [Beta vulgaris subsp. vulga... 182 4e-70 gb|AAG13524.1|AC068924_29 putative non-LTR retroelement reverse ... 179 8e-69 gb|AAP54617.2| retrotransposon protein, putative, unclassified [... 179 8e-69 gb|AFP55557.1| non-ltr retroelement reverse transcriptase [Rosa ... 172 1e-68 >emb|CCA66040.1| hypothetical protein [Beta vulgaris subsp. vulgaris] Length = 1362 Score = 173 bits (438), Expect(3) = 2e-71 Identities = 86/268 (32%), Positives = 143/268 (53%) Frame = -2 Query: 1978 WI*KIMFCITSPAYSVLVNGSPSGFFKASCGVR*GDPLSPYLFILCAEVLSLQFHHLQAT 1799 WI ++M CI+S +++ VNG G S G+R GDP+SPYLF+LCA+ S + Sbjct: 605 WIDRVMACISSVSFTFNVNGVVEGSLSPSRGLRQGDPISPYLFLLCADAFSTLLSKAASE 664 Query: 1798 NQLRGLKFANNCSSLTHLMYADDLLIFGKADILEAHTIQKAIEVYCAAFGQSINTAKSQL 1619 ++ G + ++HL +ADD ++F KA + E + I Y A GQ +N +K+++ Sbjct: 665 KKIHGAQICRGAPVVSHLFFADDSILFTKASVQECSMVADIISKYERASGQQVNLSKTEV 724 Query: 1618 IHSKHLPTSFSFVLHAIYKVPYTTHFPNYLGVPSILG*APMDQYSPLIQRFQQRLAGWKS 1439 + S+ + + + V YLG+P+I+G + ++ + +R ++L GWK Sbjct: 725 VFSRSVDRERRSAIVNVLGVKEVDRQEKYLGLPTIIGRSKKVTFACIKERIWKKLQGWKE 784 Query: 1438 CILSKGGRLTLVNSVLSTLPTYIMSCLRLQIKLIETLDQYRKSFFWGHEKGQHKLHYFAW 1259 +LS+ G+ L+ SV +PTY+MS L LI+ + F+WG K+H+ +W Sbjct: 785 KLLSRPGKEVLIKSVAQAIPTYMMSVFSLPSGLIDEIHSLLARFWWGSSDTNRKMHWHSW 844 Query: 1258 ELACKPLKQGGLGIKDLEVQNVALLGNR 1175 + C P GGLG +DL N +LL + Sbjct: 845 DTLCYPKSMGGLGFRDLHCFNQSLLAKQ 872 Score = 73.2 bits (178), Expect(3) = 2e-71 Identities = 43/148 (29%), Positives = 73/148 (49%), Gaps = 1/148 (0%) Frame = -1 Query: 1178 QAWSLLN-PTSLWAKYMKAKYFPNDNFMRSKCPRSASLVWKSLCKLKHLLAFGLHWHIGN 1002 QAW L +L + ++A+YF + + ++ + S W+S+ K LL GL W +G+ Sbjct: 872 QAWRLCTGDQTLLYRLLQARYFKSSELLEARRGYNPSFTWRSIWGSKSLLLEGLKWCVGS 931 Query: 1001 GISVRAWLDSWVPDTPAPLPLLPQPDGCVLDKVSDFIDPVHRQWRHDLVLTYWPPSYADR 822 G +R W D+W+ A + PQ D + KV D ID W + V + + Sbjct: 932 GERIRVWEDAWILGEGAHMVPTPQADSNLDLKVCDLIDVARGAWNIESVQQTFVEEEWEL 991 Query: 821 ILSMPLSCSPHQDSQY*APDKHRTYTVK 738 +LS+PLS D +Y P ++ ++V+ Sbjct: 992 VLSIPLSRFLPDDHRYWWPSRNGIFSVR 1019 Score = 73.2 bits (178), Expect(3) = 2e-71 Identities = 41/127 (32%), Positives = 63/127 (49%) Frame = -3 Query: 684 TTLYKQIWSLKVPYKIRFFLWQGAQGVIPMADSLVAKSFIVDPYCYVCTDKDESAMHFFV 505 T L++++W L+ P K+ FLW+ +G + + L ++ VD C VC D DES H Sbjct: 1042 TELWRRVWQLQGPPKLSHFLWRACKGSLAVKGRLFSRHISVDATCSVCGDPDESINHALF 1101 Query: 504 DCSFAHAVWFGFNFCHTVNQASQVNSHSWMADVLKVLAQDIDSTYLLTLFATIMWQLWLE 325 DC+FA A+W F + A S ++ L+ LA+ T+ + MW W Sbjct: 1102 DCTFARAIWQVSGFASLMMNAPL----SSFSERLEWLAKHATKEEFRTM-CSFMWAGWFC 1156 Query: 324 RNKFQFQ 304 RNK F+ Sbjct: 1157 RNKLIFE 1163 >emb|CCA66050.1| hypothetical protein [Beta vulgaris subsp. vulgaris] Length = 1357 Score = 182 bits (463), Expect(4) = 4e-70 Identities = 93/268 (34%), Positives = 148/268 (55%) Frame = -2 Query: 1978 WI*KIMFCITSPAYSVLVNGSPSGFFKASCGVR*GDPLSPYLFILCAEVLSLQFHHLQAT 1799 W+ +M C+ + +YS ++NG G S G+R GDPLSP+LFIL A+ S + Sbjct: 609 WVNLVMSCVATVSYSFIINGRVCGSVTPSRGLRQGDPLSPFLFILVADAFSQMVKQKVVS 668 Query: 1798 NQLRGLKFANNCSSLTHLMYADDLLIFGKADILEAHTIQKAIEVYCAAFGQSINTAKSQL 1619 ++ G K + N ++HL++ADD L+F +A E TI + Y AA GQ IN KS++ Sbjct: 669 KEIHGAKASRNGPEISHLLFADDSLLFTRATRQECLTIVDILNKYEAASGQKINYEKSEV 728 Query: 1618 IHSKHLPTSFSFVLHAIYKVPYTTHFPNYLGVPSILG*APMDQYSPLIQRFQQRLAGWKS 1439 S+ + L + + YLG+P++ G + + L+ R ++L GWK Sbjct: 729 SFSRGVSCEKKEELITLLHMRQVDRHQKYLGIPALCGRSKKVLFRELLDRMWKKLRGWKE 788 Query: 1438 CILSKGGRLTLVNSVLSTLPTYIMSCLRLQIKLIETLDQYRKSFFWGHEKGQHKLHYFAW 1259 +LS+ G+ L+ +V+ LPTY+M +L + +I+ + F+WG + + K+H+ +W Sbjct: 789 KLLSRAGKEVLIKAVIQALPTYLMGVYKLPVAVIQEIHSAMARFWWGGKGDERKMHWLSW 848 Query: 1258 ELACKPLKQGGLGIKDLEVQNVALLGNR 1175 E CKP GG+G KDL V N ALLG + Sbjct: 849 EKMCKPKCMGGMGFKDLAVFNDALLGKQ 876 Score = 76.3 bits (186), Expect(4) = 4e-70 Identities = 48/151 (31%), Positives = 75/151 (49%), Gaps = 1/151 (0%) Frame = -1 Query: 1187 IG*QAWSLL-NPTSLWAKYMKAKYFPNDNFMRSKCPRSASLVWKSLCKLKHLLAFGLHWH 1011 +G Q W LL N SL ++ M AKY+P+ + ++ S S W+S+ K L+ GL W Sbjct: 873 LGKQVWRLLHNKESLLSRVMSAKYYPHGDVRYARLGYSHSYSWRSIWGAKSLVLEGLIWR 932 Query: 1010 IGNGISVRAWLDSWVPDTPAPLPLLPQPDGCVLDKVSDFIDPVHRQWRHDLVLTYWPPSY 831 +G+G + W WV D + +G L+ V D +D ++W +L+ ++ Sbjct: 933 VGDGTKIDIWSAPWVGDEEGRFIKSARVEG--LEVVGDLMDVERKEWNVELIERHFNERD 990 Query: 830 ADRILSMPLSCSPHQDSQY*APDKHRTYTVK 738 IL++PLS QD A K TY+VK Sbjct: 991 QQCILAIPLSTRCLQDELTWAYSKDGTYSVK 1021 Score = 52.0 bits (123), Expect(4) = 4e-70 Identities = 36/145 (24%), Positives = 60/145 (41%), Gaps = 12/145 (8%) Frame = -3 Query: 666 IWSLKVPYKIRFFLWQGAQGVIPMADSLVAKSFIVDPYCYVCTDKDESAMHFFVDCSFAH 487 +WSL V K+R FLW+ +P+ L + I + C C +DE+ H F C + Sbjct: 1042 LWSLNVSPKVRHFLWRACTSSLPVRKVLQRRHLIDEAGCPCCAREDETQFHLFYRCPMSL 1101 Query: 486 AVWFGFN------------FCHTVNQASQVNSHSWMADVLKVLAQDIDSTYLLTLFATIM 343 +W C T+ + SQ+++ KV+ + I+ Sbjct: 1102 KLWEELGSYILLPGIEDEAMCDTLVRWSQMDA--------KVVQKG----------CYIL 1143 Query: 342 WQLWLERNKFQFQAVHGRPNPLTVI 268 W +W+ERN+ F+ P TV+ Sbjct: 1144 WNVWVERNRRVFEHT---SQPATVV 1165 Score = 24.6 bits (52), Expect(4) = 4e-70 Identities = 15/45 (33%), Positives = 19/45 (42%) Frame = -1 Query: 176 PLYWMFPPFDYLKFNVDGSSLGNPRPAGARGVLRDVTGKFLDVST 42 P W PP +K N D +SL G + RD GK +T Sbjct: 1195 PSRWYAPPVGAIKLNTD-ASLAEEGWVGLGVIARDSEGKVCFAAT 1238 >gb|AAG13524.1|AC068924_29 putative non-LTR retroelement reverse transcriptase [Oryza sativa Japonica Group] Length = 1382 Score = 179 bits (453), Expect(3) = 8e-69 Identities = 88/268 (32%), Positives = 145/268 (54%) Frame = -2 Query: 1978 WI*KIMFCITSPAYSVLVNGSPSGFFKASCGVR*GDPLSPYLFILCAEVLSLQFHHLQAT 1799 WI +M C++S Y+V +NG + S G+R GDP+SPYLF+LC E LS H + Sbjct: 617 WINTVMRCVSSVRYAVKINGELTKPVVPSRGIRQGDPISPYLFLLCTEGLSCLLHKKEVA 676 Query: 1798 NQLRGLKFANNCSSLTHLMYADDLLIFGKADILEAHTIQKAIEVYCAAFGQSINTAKSQL 1619 +L+G+K + ++HL++ADD + F KAD ++ + YC+A GQ IN KS + Sbjct: 677 GELQGIKNGRHGPPISHLLFADDSIFFAKADSRNVQALKNTLRSYCSASGQKINLHKSSI 736 Query: 1618 IHSKHLPTSFSFVLHAIYKVPYTTHFPNYLGVPSILG*APMDQYSPLIQRFQQRLAGWKS 1439 K P + + + +V +YLG+P+ +G A + + L +R +R+ GW Sbjct: 737 FFGKRCPDAVKISVKSCLQVDNEVLQDSYLGMPTEIGLATTNFFKFLPERIWKRVNGWTD 796 Query: 1438 CILSKGGRLTLVNSVLSTLPTYIMSCLRLQIKLIETLDQYRKSFFWGHEKGQHKLHYFAW 1259 LS+ G T++ +V +P Y+MSC R+ + + E + +WG E G+ K+H+ +W Sbjct: 797 RPLSRAGMETMLKAVAQAIPNYVMSCFRIPVSICEKMKTCIADHWWGFEDGKKKMHWKSW 856 Query: 1258 ELACKPLKQGGLGIKDLEVQNVALLGNR 1175 P GG+G ++ N A+LG + Sbjct: 857 SWLSTPKFLGGMGFREFTTFNQAMLGRQ 884 Score = 83.6 bits (205), Expect(3) = 8e-69 Identities = 51/153 (33%), Positives = 80/153 (52%), Gaps = 3/153 (1%) Frame = -1 Query: 1187 IG*QAWSLL-NPTSLWAKYMKAKYFPNDNFMRSKCPRSASLVWKSLCKLKHLLAFGLHWH 1011 +G Q W LL +P SL ++ +K +YFPN +F + P+S S W+SL + LLA G+ W Sbjct: 881 LGRQCWRLLTDPDSLCSRVLKGRYFPNSSFWEAAQPKSPSFTWRSLLFGRELLAKGVRWG 940 Query: 1010 IGNGISVRAWLDSWVPDTPAPL--PLLPQPDGCVLDKVSDFIDPVHRQWRHDLVLTYWPP 837 +G+G +++ + D+W+P L L P P VS ++ R W DL+ + +P Sbjct: 941 VGDGKTIKIFSDNWIPGFRPQLVTTLSPFPTDAT---VSCLMNEDARCWDGDLIRSLFPV 997 Query: 836 SYADRILSMPLSCSPHQDSQY*APDKHRTYTVK 738 A IL +P+S D DK Y+V+ Sbjct: 998 DIAKEILQIPISRHGDADFASWPHDKLGLYSVR 1030 Score = 48.1 bits (113), Expect(3) = 8e-69 Identities = 33/129 (25%), Positives = 52/129 (40%), Gaps = 10/129 (7%) Frame = -3 Query: 675 YKQIWSLKVPYKIRFFLWQGAQGVIPMADSLVAKSFIVDPYCYVCTDKDESAMHFFVDCS 496 +K +W + P K++ LW+ A + L + C C ++D++ H F+ C Sbjct: 1063 WKGLWKINAPGKMKITLWRAAHECLATGFQLRRRHIPSTDGCVFC-NRDDTVEHVFLFCP 1121 Query: 495 FAHAVW----------FGFNFCHTVNQASQVNSHSWMADVLKVLAQDIDSTYLLTLFATI 346 FA +W G N T+ Q W+ D LK S++ TL A Sbjct: 1122 FAAQIWEEIKGKCAVKLGRNGFSTMRQ--------WIFDFLK-----RGSSHANTLLAVT 1168 Query: 345 MWQLWLERN 319 W +W RN Sbjct: 1169 FWHIWEARN 1177 >gb|AAP54617.2| retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group] gi|125575397|gb|EAZ16681.1| hypothetical protein OsJ_32156 [Oryza sativa Japonica Group] Length = 1339 Score = 179 bits (453), Expect(3) = 8e-69 Identities = 88/268 (32%), Positives = 145/268 (54%) Frame = -2 Query: 1978 WI*KIMFCITSPAYSVLVNGSPSGFFKASCGVR*GDPLSPYLFILCAEVLSLQFHHLQAT 1799 WI +M C++S Y+V +NG + S G+R GDP+SPYLF+LC E LS H + Sbjct: 574 WINTVMRCVSSVRYAVKINGELTKPVVPSRGIRQGDPISPYLFLLCTEGLSCLLHKKEVA 633 Query: 1798 NQLRGLKFANNCSSLTHLMYADDLLIFGKADILEAHTIQKAIEVYCAAFGQSINTAKSQL 1619 +L+G+K + ++HL++ADD + F KAD ++ + YC+A GQ IN KS + Sbjct: 634 GELQGIKNGRHGPPISHLLFADDSIFFAKADSRNVQALKNTLRSYCSASGQKINLHKSSI 693 Query: 1618 IHSKHLPTSFSFVLHAIYKVPYTTHFPNYLGVPSILG*APMDQYSPLIQRFQQRLAGWKS 1439 K P + + + +V +YLG+P+ +G A + + L +R +R+ GW Sbjct: 694 FFGKRCPDAVKISVKSCLQVDNEVLQDSYLGMPTEIGLATTNFFKFLPERIWKRVNGWTD 753 Query: 1438 CILSKGGRLTLVNSVLSTLPTYIMSCLRLQIKLIETLDQYRKSFFWGHEKGQHKLHYFAW 1259 LS+ G T++ +V +P Y+MSC R+ + + E + +WG E G+ K+H+ +W Sbjct: 754 RPLSRAGMETMLKAVAQAIPNYVMSCFRIPVSICEKMKTCIADHWWGFEDGKKKMHWKSW 813 Query: 1258 ELACKPLKQGGLGIKDLEVQNVALLGNR 1175 P GG+G ++ N A+LG + Sbjct: 814 SWLSTPKFLGGMGFREFTTFNQAMLGRQ 841 Score = 83.6 bits (205), Expect(3) = 8e-69 Identities = 51/153 (33%), Positives = 80/153 (52%), Gaps = 3/153 (1%) Frame = -1 Query: 1187 IG*QAWSLL-NPTSLWAKYMKAKYFPNDNFMRSKCPRSASLVWKSLCKLKHLLAFGLHWH 1011 +G Q W LL +P SL ++ +K +YFPN +F + P+S S W+SL + LLA G+ W Sbjct: 838 LGRQCWRLLTDPDSLCSRVLKGRYFPNSSFWEAAQPKSPSFTWRSLLFGRELLAKGVRWG 897 Query: 1010 IGNGISVRAWLDSWVPDTPAPL--PLLPQPDGCVLDKVSDFIDPVHRQWRHDLVLTYWPP 837 +G+G +++ + D+W+P L L P P VS ++ R W DL+ + +P Sbjct: 898 VGDGKTIKIFSDNWIPGFRPQLVTTLSPFPTDAT---VSCLMNEDARCWDGDLIRSLFPV 954 Query: 836 SYADRILSMPLSCSPHQDSQY*APDKHRTYTVK 738 A IL +P+S D DK Y+V+ Sbjct: 955 DIAKEILQIPISRHGDADFASWPHDKLGLYSVR 987 Score = 48.1 bits (113), Expect(3) = 8e-69 Identities = 33/129 (25%), Positives = 52/129 (40%), Gaps = 10/129 (7%) Frame = -3 Query: 675 YKQIWSLKVPYKIRFFLWQGAQGVIPMADSLVAKSFIVDPYCYVCTDKDESAMHFFVDCS 496 +K +W + P K++ LW+ A + L + C C ++D++ H F+ C Sbjct: 1020 WKGLWKINAPGKMKITLWRAAHECLATGFQLRRRHIPSTDGCVFC-NRDDTVEHVFLFCP 1078 Query: 495 FAHAVW----------FGFNFCHTVNQASQVNSHSWMADVLKVLAQDIDSTYLLTLFATI 346 FA +W G N T+ Q W+ D LK S++ TL A Sbjct: 1079 FAAQIWEEIKGKCAVKLGRNGFSTMRQ--------WIFDFLK-----RGSSHANTLLAVT 1125 Query: 345 MWQLWLERN 319 W +W RN Sbjct: 1126 FWHIWEARN 1134 >gb|AFP55557.1| non-ltr retroelement reverse transcriptase [Rosa rugosa] Length = 1747 Score = 172 bits (436), Expect(3) = 1e-68 Identities = 95/264 (35%), Positives = 138/264 (52%) Frame = -2 Query: 1966 IMFCITSPAYSVLVNGSPSGFFKASCGVR*GDPLSPYLFILCAEVLSLQFHHLQATNQLR 1787 IM C+ S YSVL+ G+P G K S G+R GDP+SPYLF++ AE LS + Q+ Sbjct: 894 IMDCVKSVTYSVLLQGAPFGKIKPSRGLRQGDPISPYLFLIVAEGLSALIRKAEREQQIH 953 Query: 1786 GLKFANNCSSLTHLMYADDLLIFGKADILEAHTIQKAIEVYCAAFGQSINTAKSQLIHSK 1607 G+ A S++HL YADD L+F A + + ++ Y AA GQ IN KS + S Sbjct: 954 GVAIARGAPSVSHLFYADDSLLFCDATVTDCMALKNIFSTYEAASGQKINKDKSAICFSP 1013 Query: 1606 HLPTSFSFVLHAIYKVPYTTHFPNYLGVPSILG*APMDQYSPLIQRFQQRLAGWKSCILS 1427 P + AI +P YLG+P++ G + L R R+ GW+ +LS Sbjct: 1014 KSPAAIKEACSAILDMPVVPCHERYLGLPTVSGKDKKKLFQSLPDRVWNRVHGWEGKLLS 1073 Query: 1426 KGGRLTLVNSVLSTLPTYIMSCLRLQIKLIETLDQYRKSFFWGHEKGQHKLHYFAWELAC 1247 K G+ L+ +V +P Y MS +L + +++ F+WG E G+ +H+ W C Sbjct: 1074 KAGKEVLIKTVAQAIPNYTMSVFQLPAGTSDAINKCVARFWWGKEGGK-GIHWRRWSDLC 1132 Query: 1246 KPLKQGGLGIKDLEVQNVALLGNR 1175 K GGLG +DL + N ALLG + Sbjct: 1133 FSKKDGGLGFRDLSLFNQALLGKQ 1156 Score = 79.0 bits (193), Expect(3) = 1e-68 Identities = 51/151 (33%), Positives = 79/151 (52%), Gaps = 1/151 (0%) Frame = -1 Query: 1187 IG*QAWSLLN-PTSLWAKYMKAKYFPNDNFMRSKCPRSASLVWKSLCKLKHLLAFGLHWH 1011 +G Q W L+ P SL A+ +KAKYFP D+FM ++ S S +W+S + LL G+ W Sbjct: 1153 LGKQGWRLMMYPDSLVARMLKAKYFPWDDFMEAELGSSPSYLWRSFLWGRELLRKGVRWR 1212 Query: 1010 IGNGISVRAWLDSWVPDTPAPLPLLPQPDGCVLDKVSDFIDPVHRQWRHDLVLTYWPPSY 831 IG+G VR ++D WVP P+ P+L Q L +VSD + + W + + ++ Sbjct: 1213 IGDGKEVRVFIDPWVPGLPSFRPILRQGAPLFL-RVSDLLHN-NGGWNMEALNYWFTDDE 1270 Query: 830 ADRILSMPLSCSPHQDSQY*APDKHRTYTVK 738 + I S+ + + D K+ YTVK Sbjct: 1271 CEAISSITVGATRRPDVYMWNYCKNGRYTVK 1301 Score = 58.9 bits (141), Expect(3) = 1e-68 Identities = 36/123 (29%), Positives = 54/123 (43%) Frame = -3 Query: 687 PTTLYKQIWSLKVPYKIRFFLWQGAQGVIPMADSLVAKSFIVDPYCYVCTDKDESAMHFF 508 P +K +W LK+P KI FLW+ + G IP + L+ K C+ C ES +H Sbjct: 1322 PRNFWKHLWKLKLPPKINHFLWRCSMGFIPCMEVLLWKHIAHSASCFRCQQGRESPVHAT 1381 Query: 507 VDCSFAHAVWFGFNFCHTVNQASQVNSHSWMADVLKVLAQDIDSTYLLTLFATIMWQLWL 328 CS AV+ F ++ + + L ++ L LFA ++W W Sbjct: 1382 WGCSCCVAVFERAGFYSKLSSGQFPSFIHLLHHAFSTLDKE-----ELQLFAVLLWLNWH 1436 Query: 327 ERN 319 ERN Sbjct: 1437 ERN 1439