BLASTX nr result

ID: Coptis23_contig00004652 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00004652
         (478 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003634755.1| PREDICTED: ABC transporter C family member 3...   258   4e-67
ref|XP_002533032.1| multidrug resistance-associated protein 2, 6...   258   5e-67
ref|XP_003518544.1| PREDICTED: ABC transporter C family member 3...   256   1e-66
ref|XP_003545103.1| PREDICTED: ABC transporter C family member 3...   256   2e-66
ref|XP_002265605.2| PREDICTED: ABC transporter C family member 3...   254   7e-66

>ref|XP_003634755.1| PREDICTED: ABC transporter C family member 3-like [Vitis vinifera]
          Length = 1488

 Score =  258 bits (659), Expect = 4e-67
 Identities = 128/160 (80%), Positives = 146/160 (91%), Gaps = 1/160 (0%)
 Frame = -2

Query: 477  TFVSVITFGACMLLGVPLESGKILSALATFRILQEPIYTLPDTISVVAQTKVSLDRIASF 298
            TFVSV TFG CMLLG+PLESGKILS+LATFRILQEPIY+LPD IS++AQTKVSLDRIASF
Sbjct: 526  TFVSVATFGTCMLLGIPLESGKILSSLATFRILQEPIYSLPDLISMIAQTKVSLDRIASF 585

Query: 297  LRLDDLPADVVEKLPKG-SEASIEIRDGCFSWDITSSSPTLKDINFQVFHGMRVAVCGTV 121
            LRLDDLP+DV+E+LPKG S+ +IEI DG FSWD++S +PTLKDIN +V  GMRVAVCGTV
Sbjct: 586  LRLDDLPSDVIERLPKGSSDTAIEIVDGNFSWDLSSPNPTLKDINLRVCRGMRVAVCGTV 645

Query: 120  GSGKSSLLSCILGEVPKLSGSIKLSGTKAYIPQSPWIQSG 1
            GSGKSSLLSC+LGEVPK+SG +KL GTKAY+ QSPWIQSG
Sbjct: 646  GSGKSSLLSCMLGEVPKISGILKLCGTKAYVAQSPWIQSG 685


>ref|XP_002533032.1| multidrug resistance-associated protein 2, 6 (mrp2, 6),
           abc-transoprter, putative [Ricinus communis]
           gi|223527170|gb|EEF29340.1| multidrug
           resistance-associated protein 2, 6 (mrp2, 6),
           abc-transoprter, putative [Ricinus communis]
          Length = 1233

 Score =  258 bits (658), Expect = 5e-67
 Identities = 127/160 (79%), Positives = 145/160 (90%), Gaps = 1/160 (0%)
 Frame = -2

Query: 477 TFVSVITFGACMLLGVPLESGKILSALATFRILQEPIYTLPDTISVVAQTKVSLDRIASF 298
           TFVSV+TFG CM+LG+PLESGKILSALATFRILQEPIY LPDTIS++ QTKVSLDRI+SF
Sbjct: 361 TFVSVVTFGTCMVLGIPLESGKILSALATFRILQEPIYNLPDTISMLVQTKVSLDRISSF 420

Query: 297 LRLDDLPADVVEKLPKGSE-ASIEIRDGCFSWDITSSSPTLKDINFQVFHGMRVAVCGTV 121
           LRLDDL +DVVEKL +GS   +IEI DG FSW++++ +PTLKDINF+ FHGMRVAVCGTV
Sbjct: 421 LRLDDLQSDVVEKLTRGSSNTAIEIADGNFSWELSAPNPTLKDINFKAFHGMRVAVCGTV 480

Query: 120 GSGKSSLLSCILGEVPKLSGSIKLSGTKAYIPQSPWIQSG 1
           GSGKSSLLSCILGEVPK+SG +KL GTKAY+ QSPWIQSG
Sbjct: 481 GSGKSSLLSCILGEVPKISGILKLCGTKAYVAQSPWIQSG 520


>ref|XP_003518544.1| PREDICTED: ABC transporter C family member 3-like [Glycine max]
          Length = 2054

 Score =  256 bits (655), Expect = 1e-66
 Identities = 126/160 (78%), Positives = 146/160 (91%), Gaps = 1/160 (0%)
 Frame = -2

Query: 477  TFVSVITFGACMLLGVPLESGKILSALATFRILQEPIYTLPDTISVVAQTKVSLDRIASF 298
            TFVSV+TFG CML+G+PLESGKILSALATFRILQEPIY LPDTIS++AQTKVSLDRI SF
Sbjct: 1092 TFVSVVTFGTCMLMGIPLESGKILSALATFRILQEPIYGLPDTISMIAQTKVSLDRIVSF 1151

Query: 297  LRLDDLPADVVEKLPKG-SEASIEIRDGCFSWDITSSSPTLKDINFQVFHGMRVAVCGTV 121
            LRLDDL +DVVEKLP G S+ +IE+ DG FSWD++S SPTL++IN +VFHGMRVAVCGTV
Sbjct: 1152 LRLDDLRSDVVEKLPWGSSDTAIEVVDGNFSWDLSSPSPTLQNINLKVFHGMRVAVCGTV 1211

Query: 120  GSGKSSLLSCILGEVPKLSGSIKLSGTKAYIPQSPWIQSG 1
            GSGKS+LLSC+LGEVPK+SG +K+ GTKAY+ QSPWIQSG
Sbjct: 1212 GSGKSTLLSCVLGEVPKISGILKVCGTKAYVAQSPWIQSG 1251


>ref|XP_003545103.1| PREDICTED: ABC transporter C family member 3-like [Glycine max]
          Length = 1494

 Score =  256 bits (653), Expect = 2e-66
 Identities = 125/160 (78%), Positives = 146/160 (91%), Gaps = 1/160 (0%)
 Frame = -2

Query: 477  TFVSVITFGACMLLGVPLESGKILSALATFRILQEPIYTLPDTISVVAQTKVSLDRIASF 298
            TFVSV+TFG CML+G+PLESGKILSALATFRILQEPIY LPDTIS++AQTKVSLDRI SF
Sbjct: 532  TFVSVVTFGTCMLIGIPLESGKILSALATFRILQEPIYRLPDTISMIAQTKVSLDRIVSF 591

Query: 297  LRLDDLPADVVEKLPKG-SEASIEIRDGCFSWDITSSSPTLKDINFQVFHGMRVAVCGTV 121
            LRLDDL +DVVEKLP G S+ +IE+ DG FSWD++S +PTL++IN +VFHGMRVAVCGTV
Sbjct: 592  LRLDDLRSDVVEKLPWGSSDTAIEVVDGNFSWDLSSPNPTLQNINLKVFHGMRVAVCGTV 651

Query: 120  GSGKSSLLSCILGEVPKLSGSIKLSGTKAYIPQSPWIQSG 1
            GSGKS+LLSC+LGEVPK+SG +K+ GTKAY+ QSPWIQSG
Sbjct: 652  GSGKSTLLSCVLGEVPKISGILKVCGTKAYVAQSPWIQSG 691


>ref|XP_002265605.2| PREDICTED: ABC transporter C family member 3-like [Vitis vinifera]
          Length = 1485

 Score =  254 bits (648), Expect = 7e-66
 Identities = 127/159 (79%), Positives = 142/159 (89%), Gaps = 1/159 (0%)
 Frame = -2

Query: 474  FVSVITFGACMLLGVPLESGKILSALATFRILQEPIYTLPDTISVVAQTKVSLDRIASFL 295
            FVSV++FG  ML+G+PLESGKILS+LATFRILQEPIY LPDTIS++AQTKVSLDRIASFL
Sbjct: 534  FVSVVSFGTAMLMGIPLESGKILSSLATFRILQEPIYNLPDTISMIAQTKVSLDRIASFL 593

Query: 294  RLDDLPADVVEKLPKG-SEASIEIRDGCFSWDITSSSPTLKDINFQVFHGMRVAVCGTVG 118
            RLDDL  DVVEKLPKG S  +IEI +G FSWD++S  PTLKDIN QV HGMRVAVCG VG
Sbjct: 594  RLDDLQPDVVEKLPKGTSSTAIEIVNGNFSWDLSSPHPTLKDINLQVHHGMRVAVCGAVG 653

Query: 117  SGKSSLLSCILGEVPKLSGSIKLSGTKAYIPQSPWIQSG 1
            SGKSSLLSCILGEVPK+SG++KLSGTKAY+ QSPWIQ G
Sbjct: 654  SGKSSLLSCILGEVPKISGTLKLSGTKAYVAQSPWIQGG 692


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