BLASTX nr result
ID: Coptis23_contig00004630
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00004630
(664 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002265367.1| PREDICTED: CLIP-associating protein-like [Vi... 280 2e-73
ref|XP_003625468.1| CLIP-associating protein [Medicago truncatul... 242 2e-72
ref|XP_002303094.1| predicted protein [Populus trichocarpa] gi|2... 266 3e-69
dbj|BAE98846.1| hypothetical protein [Arabidopsis thaliana] 265 4e-69
ref|NP_849997.2| CLIP-associated protein [Arabidopsis thaliana] ... 265 4e-69
>ref|XP_002265367.1| PREDICTED: CLIP-associating protein-like [Vitis vinifera]
Length = 1440
Score = 280 bits (716), Expect = 2e-73
Identities = 139/167 (83%), Positives = 152/167 (91%)
Frame = +2
Query: 56 YRVSQGVLQALASASVLSGEHFKLHFNSLVPAVVERLGDGKQPVRDAARRLLLTLMEVSS 235
+RVSQG LQALASA+VLSG+HFKLHFN+LVPAVVERLGDGKQPVRDAARRLLLTLMEVSS
Sbjct: 55 FRVSQGSLQALASAAVLSGDHFKLHFNALVPAVVERLGDGKQPVRDAARRLLLTLMEVSS 114
Query: 236 PTIIVERAGSYAWMHKSWRVREEFARTVTSAIGLFASTELPLQGVILPPILQMLNDSNHS 415
PTIIVERAGSYAW HKSWRVREEFARTVTSAI LFASTELPLQ VILPPILQMLNDSNH
Sbjct: 115 PTIIVERAGSYAWTHKSWRVREEFARTVTSAISLFASTELPLQRVILPPILQMLNDSNHG 174
Query: 416 VREAAVFCIEEMYAQVGPQFREELQRHHLPSSMILNFRSKISMLDWK 556
VREAA+ CIEEMY Q GPQFR+ELQRHHLP+SM+ + ++ ++ K
Sbjct: 175 VREAAILCIEEMYTQAGPQFRDELQRHHLPTSMLRDINIRLERIEPK 221
>ref|XP_003625468.1| CLIP-associating protein [Medicago truncatula]
gi|355500483|gb|AES81686.1| CLIP-associating protein
[Medicago truncatula]
Length = 341
Score = 242 bits (617), Expect(2) = 2e-72
Identities = 123/165 (74%), Positives = 143/165 (86%), Gaps = 4/165 (2%)
Frame = +2
Query: 56 YRVSQGVLQALASASVLSGEHFKLHFNSLVPAVVERLGDGKQPVRDAARRLLLTLMEVSS 235
+RVSQG LQ+LASA+VLSGEHFKLHFN+L+PAVV+RLGD KQPVRDAARRLLLTLMEVSS
Sbjct: 55 FRVSQGALQSLASAAVLSGEHFKLHFNALLPAVVDRLGDAKQPVRDAARRLLLTLMEVSS 114
Query: 236 PTIIVERAGSYAWMHKSWRVREEFARTVTSAIGLFASTELPLQGVILPPI--LQMLN--D 403
PTIIVERAGS AW HKSWRVREEF RTVTSAI LF++TELPLQ ILPP+ LQ+ N D
Sbjct: 115 PTIIVERAGSSAWAHKSWRVREEFTRTVTSAINLFSATELPLQRAILPPVLTLQITNKRD 174
Query: 404 SNHSVREAAVFCIEEMYAQVGPQFREELQRHHLPSSMILNFRSKI 538
N +VREAA+ CIEEMY Q GPQFR+EL R++LPSSM+ + +++
Sbjct: 175 PNLAVREAAILCIEEMYTQAGPQFRDELHRYNLPSSMVKDINARL 219
Score = 56.6 bits (135), Expect(2) = 2e-72
Identities = 26/45 (57%), Positives = 37/45 (82%)
Frame = +1
Query: 529 VKDINARLEKIEPKIRSSNGAAGHFLPGEMKSASLSHKKSSPKNK 663
VKDINARLE I+PK+RSS+G ++ GE+K+++++ KKSSPK K
Sbjct: 212 VKDINARLEGIQPKVRSSDGIPSGYITGEIKTSNVNPKKSSPKAK 256
>ref|XP_002303094.1| predicted protein [Populus trichocarpa] gi|222844820|gb|EEE82367.1|
predicted protein [Populus trichocarpa]
Length = 1426
Score = 266 bits (680), Expect = 3e-69
Identities = 130/165 (78%), Positives = 149/165 (90%)
Frame = +2
Query: 56 YRVSQGVLQALASASVLSGEHFKLHFNSLVPAVVERLGDGKQPVRDAARRLLLTLMEVSS 235
++VSQG LQALASA+VLSG++FKLHFN+LVPAVVERLGDGKQPVRDAARRLLLTLMEVSS
Sbjct: 55 FKVSQGALQALASAAVLSGDYFKLHFNALVPAVVERLGDGKQPVRDAARRLLLTLMEVSS 114
Query: 236 PTIIVERAGSYAWMHKSWRVREEFARTVTSAIGLFASTELPLQGVILPPILQMLNDSNHS 415
PTIIVERAGS+AW H+SWRVREEFARTVTSAI LFASTELPLQ ILPPILQMLND N
Sbjct: 115 PTIIVERAGSFAWTHRSWRVREEFARTVTSAINLFASTELPLQRAILPPILQMLNDPNPG 174
Query: 416 VREAAVFCIEEMYAQVGPQFREELQRHHLPSSMILNFRSKISMLD 550
VREAA+ CIEEMY+Q GPQFR+EL RHHLP+SM+ + +++ ++
Sbjct: 175 VREAAILCIEEMYSQAGPQFRDELHRHHLPNSMMKDINARLERIE 219
Score = 60.5 bits (145), Expect = 3e-07
Identities = 29/45 (64%), Positives = 35/45 (77%)
Frame = +1
Query: 529 VKDINARLEKIEPKIRSSNGAAGHFLPGEMKSASLSHKKSSPKNK 663
+KDINARLE+IEP++R S+G G+F P EMK SL KKSSPK K
Sbjct: 208 MKDINARLERIEPQVRPSDGLGGNFAPVEMKPTSLHSKKSSPKAK 252
>dbj|BAE98846.1| hypothetical protein [Arabidopsis thaliana]
Length = 1031
Score = 265 bits (678), Expect = 4e-69
Identities = 133/165 (80%), Positives = 146/165 (88%)
Frame = +2
Query: 56 YRVSQGVLQALASASVLSGEHFKLHFNSLVPAVVERLGDGKQPVRDAARRLLLTLMEVSS 235
+RVSQG LQALASA+VL+GEH KLH N+LVPAVVERLGD KQPVRDAARRLL TLMEVSS
Sbjct: 55 FRVSQGALQALASAAVLAGEHLKLHLNALVPAVVERLGDSKQPVRDAARRLLTTLMEVSS 114
Query: 236 PTIIVERAGSYAWMHKSWRVREEFARTVTSAIGLFASTELPLQGVILPPILQMLNDSNHS 415
PTIIVERAGSYAWMHKSWRVREEFARTVTSAIGLFASTELPLQ VIL PILQMLND N +
Sbjct: 115 PTIIVERAGSYAWMHKSWRVREEFARTVTSAIGLFASTELPLQRVILAPILQMLNDPNQA 174
Query: 416 VREAAVFCIEEMYAQVGPQFREELQRHHLPSSMILNFRSKISMLD 550
VREAA+ CIEEMY Q G QFREELQRHHLPS M+ + +++ ++
Sbjct: 175 VREAAILCIEEMYMQGGSQFREELQRHHLPSYMVKDINARLERIE 219
Score = 56.2 bits (134), Expect = 5e-06
Identities = 25/45 (55%), Positives = 38/45 (84%)
Frame = +1
Query: 529 VKDINARLEKIEPKIRSSNGAAGHFLPGEMKSASLSHKKSSPKNK 663
VKDINARLE+IEP++RS++G + H + E+K++S++ KKSSP+ K
Sbjct: 208 VKDINARLERIEPQLRSTDGRSAHHVVNEVKASSVNPKKSSPRAK 252
>ref|NP_849997.2| CLIP-associated protein [Arabidopsis thaliana]
gi|20259452|gb|AAM13846.1| unknown protein [Arabidopsis
thaliana] gi|330251886|gb|AEC06980.1| CLIP-associated
protein [Arabidopsis thaliana]
Length = 1439
Score = 265 bits (678), Expect = 4e-69
Identities = 133/165 (80%), Positives = 146/165 (88%)
Frame = +2
Query: 56 YRVSQGVLQALASASVLSGEHFKLHFNSLVPAVVERLGDGKQPVRDAARRLLLTLMEVSS 235
+RVSQG LQALASA+VL+GEH KLH N+LVPAVVERLGD KQPVRDAARRLL TLMEVSS
Sbjct: 55 FRVSQGALQALASAAVLAGEHLKLHLNALVPAVVERLGDSKQPVRDAARRLLTTLMEVSS 114
Query: 236 PTIIVERAGSYAWMHKSWRVREEFARTVTSAIGLFASTELPLQGVILPPILQMLNDSNHS 415
PTIIVERAGSYAWMHKSWRVREEFARTVTSAIGLFASTELPLQ VIL PILQMLND N +
Sbjct: 115 PTIIVERAGSYAWMHKSWRVREEFARTVTSAIGLFASTELPLQRVILAPILQMLNDPNQA 174
Query: 416 VREAAVFCIEEMYAQVGPQFREELQRHHLPSSMILNFRSKISMLD 550
VREAA+ CIEEMY Q G QFREELQRHHLPS M+ + +++ ++
Sbjct: 175 VREAAILCIEEMYMQGGSQFREELQRHHLPSYMVKDINARLERIE 219
Score = 56.2 bits (134), Expect = 5e-06
Identities = 25/45 (55%), Positives = 38/45 (84%)
Frame = +1
Query: 529 VKDINARLEKIEPKIRSSNGAAGHFLPGEMKSASLSHKKSSPKNK 663
VKDINARLE+IEP++RS++G + H + E+K++S++ KKSSP+ K
Sbjct: 208 VKDINARLERIEPQLRSTDGRSAHHVVNEVKASSVNPKKSSPRAK 252