BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00004611
         (1438 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI22501.3| unnamed protein product [Vitis vinifera]              434   e-119
ref|XP_002271394.1| PREDICTED: ribosomal RNA assembly protein mi...   434   e-119
ref|XP_002513405.1| Ribosomal RNA assembly protein mis3, putativ...   428   e-117
ref|NP_001064737.1| Os10g0452800 [Oryza sativa Japonica Group] g...   422   e-115
gb|EEC67082.1| hypothetical protein OsI_33853 [Oryza sativa Indi...   422   e-115

>emb|CBI22501.3| unnamed protein product [Vitis vinifera]
          Length = 424

 Score =  434 bits (1115), Expect = e-119
 Identities = 221/355 (62%), Positives = 254/355 (71%)
 Frame = +3

Query: 105  RYRGKHDKPKPWDDESIDHWKVEKFDPSWNEGGLLTTSSFATLFPAYREVYLQEVSPIVK 284
            +++GKHDKPKPWDD SIDHWKV+KFDPSWNEGG+L  SSF+TLFP YRE YLQE  P V+
Sbjct: 55   KHKGKHDKPKPWDDPSIDHWKVDKFDPSWNEGGMLEVSSFSTLFPQYREKYLQEAWPTVR 114

Query: 285  AALKPYGISYDLNMVEGTMTVSTTLKTRDPYIIVKAKELIRLLSRSVPAPQAIKILDDEM 464
             ALK +G+  +LN+VEG MTVSTT KTRDPYII+KA++LI+LLSRSVPAPQAIKIL+DEM
Sbjct: 115  GALKEFGVKSELNLVEGCMTVSTTRKTRDPYIIMKARDLIKLLSRSVPAPQAIKILNDEM 174

Query: 465  QCDIIRIGGLVRSKERFIKRRQLLLGSNSSTLKAIEILTNCYVLVQGNTVAAMGSFKGLK 644
            QCDII+IG LVR+KERF+KRRQ L+G NSSTLKA+EILT CY+LVQGNTVAAMGSFKGLK
Sbjct: 175  QCDIIKIGSLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLK 234

Query: 645  QVRRVVEDCIQNKLHPLRHIKEMMVKRELGKRPELATENWDRFLPXXXXXXXXXXXAISI 824
            QVRRVVEDCIQNK+HP+ HIK +M+KREL   P L  ENWDRFLP             S 
Sbjct: 235  QVRRVVEDCIQNKMHPVYHIKTLMMKRELASDPALENENWDRFLPKFKKKNVKQKKVKSK 294

Query: 825  EKKXXXXXXXXXXXSKIDLQLESGEYFLSDXXXXXXXXXXXXXXXXXXXXXNKRKRDAAF 1004
            EKK           SK+DLQLESGEYFLSD                     NKRKR+AAF
Sbjct: 295  EKKPYTPFPPPQPPSKVDLQLESGEYFLSDQKKFAKKWQQKLEKQAEKTAENKRKREAAF 354

Query: 1005 LPPEEHLGLNSSKFGDGKNDVTDIVMSXXXXXXXXXXXXXVENVNAEDYIAVPAE 1169
            +PP E +  + SK  D KNDV  + MS             +ENVN E YIA   E
Sbjct: 355  VPPMEPMVQDPSKSADDKNDVAAMAMSLKKKAKEFGKQKSLENVNPETYIAASGE 409


>ref|XP_002271394.1| PREDICTED: ribosomal RNA assembly protein mis3-like [Vitis vinifera]
          Length = 386

 Score =  434 bits (1115), Expect = e-119
 Identities = 221/355 (62%), Positives = 254/355 (71%)
 Frame = +3

Query: 105  RYRGKHDKPKPWDDESIDHWKVEKFDPSWNEGGLLTTSSFATLFPAYREVYLQEVSPIVK 284
            +++GKHDKPKPWDD SIDHWKV+KFDPSWNEGG+L  SSF+TLFP YRE YLQE  P V+
Sbjct: 17   KHKGKHDKPKPWDDPSIDHWKVDKFDPSWNEGGMLEVSSFSTLFPQYREKYLQEAWPTVR 76

Query: 285  AALKPYGISYDLNMVEGTMTVSTTLKTRDPYIIVKAKELIRLLSRSVPAPQAIKILDDEM 464
             ALK +G+  +LN+VEG MTVSTT KTRDPYII+KA++LI+LLSRSVPAPQAIKIL+DEM
Sbjct: 77   GALKEFGVKSELNLVEGCMTVSTTRKTRDPYIIMKARDLIKLLSRSVPAPQAIKILNDEM 136

Query: 465  QCDIIRIGGLVRSKERFIKRRQLLLGSNSSTLKAIEILTNCYVLVQGNTVAAMGSFKGLK 644
            QCDII+IG LVR+KERF+KRRQ L+G NSSTLKA+EILT CY+LVQGNTVAAMGSFKGLK
Sbjct: 137  QCDIIKIGSLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLK 196

Query: 645  QVRRVVEDCIQNKLHPLRHIKEMMVKRELGKRPELATENWDRFLPXXXXXXXXXXXAISI 824
            QVRRVVEDCIQNK+HP+ HIK +M+KREL   P L  ENWDRFLP             S 
Sbjct: 197  QVRRVVEDCIQNKMHPVYHIKTLMMKRELASDPALENENWDRFLPKFKKKNVKQKKVKSK 256

Query: 825  EKKXXXXXXXXXXXSKIDLQLESGEYFLSDXXXXXXXXXXXXXXXXXXXXXNKRKRDAAF 1004
            EKK           SK+DLQLESGEYFLSD                     NKRKR+AAF
Sbjct: 257  EKKPYTPFPPPQPPSKVDLQLESGEYFLSDQKKFAKKWQQKLEKQAEKTAENKRKREAAF 316

Query: 1005 LPPEEHLGLNSSKFGDGKNDVTDIVMSXXXXXXXXXXXXXVENVNAEDYIAVPAE 1169
            +PP E +  + SK  D KNDV  + MS             +ENVN E YIA   E
Sbjct: 317  VPPMEPMVQDPSKSADDKNDVAAMAMSLKKKAKEFGKQKSLENVNPETYIAASGE 371


>ref|XP_002513405.1| Ribosomal RNA assembly protein mis3, putative [Ricinus communis]
            gi|223547313|gb|EEF48808.1| Ribosomal RNA assembly
            protein mis3, putative [Ricinus communis]
          Length = 377

 Score =  428 bits (1101), Expect = e-117
 Identities = 220/365 (60%), Positives = 260/365 (71%), Gaps = 2/365 (0%)
 Frame = +3

Query: 81   MEGVVRPPR-YRGKHDKPKPWD-DESIDHWKVEKFDPSWNEGGLLTTSSFATLFPAYREV 254
            MEG +   + ++GKHDKPKPWD D +ID WK+EKFDPSWNEGG+L  SSF+TLFP YRE 
Sbjct: 1    MEGEIETKKKHKGKHDKPKPWDEDPNIDRWKIEKFDPSWNEGGMLEVSSFSTLFPQYREK 60

Query: 255  YLQEVSPIVKAALKPYGISYDLNMVEGTMTVSTTLKTRDPYIIVKAKELIRLLSRSVPAP 434
            YLQEV P+VK+A+K YG++ +LN+VEG+MTVSTT KTRDPYIIVKA++LI+LLSRSVPAP
Sbjct: 61   YLQEVWPMVKSAIKEYGVACELNLVEGSMTVSTTRKTRDPYIIVKARDLIKLLSRSVPAP 120

Query: 435  QAIKILDDEMQCDIIRIGGLVRSKERFIKRRQLLLGSNSSTLKAIEILTNCYVLVQGNTV 614
            QAIKIL DEMQCDII+IG LVR KERF+KRRQ L+G NSSTLKA+EILT CY+LVQGNTV
Sbjct: 121  QAIKILHDEMQCDIIKIGNLVRKKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTV 180

Query: 615  AAMGSFKGLKQVRRVVEDCIQNKLHPLRHIKEMMVKRELGKRPELATENWDRFLPXXXXX 794
            AAMGSFKGLKQVR++VEDCIQNKLHP+ HIK +M+K+EL K P L  ENWDRFLP     
Sbjct: 181  AAMGSFKGLKQVRKIVEDCIQNKLHPVYHIKILMMKKELEKDPALQNENWDRFLPKFKKK 240

Query: 795  XXXXXXAISIEKKXXXXXXXXXXXSKIDLQLESGEYFLSDXXXXXXXXXXXXXXXXXXXX 974
                      EKK           SK+D +LESGEYFL++                    
Sbjct: 241  NVKHNKVKRKEKKPYTPFPPEQQPSKVDRELESGEYFLNNQKKQAKKWQEKQERQAEKTA 300

Query: 975  XNKRKRDAAFLPPEEHLGLNSSKFGDGKNDVTDIVMSXXXXXXXXXXXXXVENVNAEDYI 1154
             NKRKRD AF+PPEEH   ++ K  D  NDV  I +S             VEN+NAE+YI
Sbjct: 301  ENKRKRDTAFVPPEEHRDQDAGKSEDKNNDVAAIALSIKKKAKDFGKKNAVENINAEEYI 360

Query: 1155 AVPAE 1169
            A   E
Sbjct: 361  AASGE 365


>ref|NP_001064737.1| Os10g0452800 [Oryza sativa Japonica Group] gi|31432429|gb|AAP54059.1|
            Ribosomal RNA assembly protein mis3, putative, expressed
            [Oryza sativa Japonica Group]
            gi|113639346|dbj|BAF26651.1| Os10g0452800 [Oryza sativa
            Japonica Group] gi|215687236|dbj|BAG91801.1| unnamed
            protein product [Oryza sativa Japonica Group]
            gi|222612935|gb|EEE51067.1| hypothetical protein
            OsJ_31745 [Oryza sativa Japonica Group]
          Length = 395

 Score =  422 bits (1084), Expect = e-115
 Identities = 215/360 (59%), Positives = 257/360 (71%), Gaps = 3/360 (0%)
 Frame = +3

Query: 87   GVVRPPRYRGKHDKPKPWDDE-SIDHWKVEKFDPSWNEGGLLTTSSFATLFPAYREVYLQ 263
            G  +PPR++GKHDKPKPWDD+ +IDHWK+EKFDPSWNEGG+L  SSF+TLFP YRE YLQ
Sbjct: 19   GRKKPPRHKGKHDKPKPWDDDPNIDHWKIEKFDPSWNEGGMLEVSSFSTLFPQYREKYLQ 78

Query: 264  EVSPIVKAALKPYGISYDLNMVEGTMTVSTTLKTRDPYIIVKAKELIRLLSRSVPAPQAI 443
            E  PIVK ALK +G++ +LN+VEG+MTVSTT KTRDPYIIVKAKELI+LLSRSVPAPQAI
Sbjct: 79   EAWPIVKGALKEFGVACELNLVEGSMTVSTTRKTRDPYIIVKAKELIKLLSRSVPAPQAI 138

Query: 444  KILDDEMQCDIIRIGGLVRSKERFIKRRQLLLGSNSSTLKAIEILTNCYVLVQGNTVAAM 623
            KIL+DEM CDII+IG ++R+KERF+KRR+ LLG N STLKAIEILT CY+LVQGNTVAAM
Sbjct: 139  KILNDEMSCDIIKIGSIIRNKERFVKRRERLLGPNLSTLKAIEILTGCYILVQGNTVAAM 198

Query: 624  GSFKGLKQVRRVVEDCIQNKLHPLRHIKEMMVKRELGKRPELATENWDRFLPXXXXXXXX 803
            GS+KGLKQVRRVVEDCI+N  HP+ HIKE+++KREL K P LA E+WDRFLP        
Sbjct: 199  GSWKGLKQVRRVVEDCIKNIKHPVYHIKELLIKRELAKNPALANESWDRFLPKFKKKNVK 258

Query: 804  XXXAISIEKKXXXXXXXXXXXSKIDLQLESGEYFLSDXXXXXXXXXXXXXXXXXXXXXNK 983
                I+ EKK           SKIDL+LESGEYF+SD                     NK
Sbjct: 259  QKKPITKEKKPYTPFPPPQQPSKIDLELESGEYFMSDKKKSAKKWQEKLEKQSEKAEENK 318

Query: 984  RKRDAAFLPPEEHLG--LNSSKFGDGKNDVTDIVMSXXXXXXXXXXXXXVENVNAEDYIA 1157
            RKR+AAF+PP+E       S+K     +++ D+  S              ENV  E Y+A
Sbjct: 319  RKREAAFVPPKEDTATPYESAKSTSNNDEIADMAKSLKKKAKEFRKSEAQENVRLESYVA 378


>gb|EEC67082.1| hypothetical protein OsI_33853 [Oryza sativa Indica Group]
          Length = 395

 Score =  422 bits (1084), Expect = e-115
 Identities = 215/360 (59%), Positives = 257/360 (71%), Gaps = 3/360 (0%)
 Frame = +3

Query: 87   GVVRPPRYRGKHDKPKPWDDE-SIDHWKVEKFDPSWNEGGLLTTSSFATLFPAYREVYLQ 263
            G  +PPR++GKHDKPKPWDD+ +IDHWK+EKFDPSWNEGG+L  SSF+TLFP YRE YLQ
Sbjct: 19   GRKKPPRHKGKHDKPKPWDDDPNIDHWKIEKFDPSWNEGGMLEVSSFSTLFPQYREKYLQ 78

Query: 264  EVSPIVKAALKPYGISYDLNMVEGTMTVSTTLKTRDPYIIVKAKELIRLLSRSVPAPQAI 443
            E  PIVK ALK +G++ +LN+VEG+MTVSTT KTRDPYIIVKAKELI+LLSRSVPAPQAI
Sbjct: 79   EAWPIVKGALKEFGVACELNLVEGSMTVSTTRKTRDPYIIVKAKELIKLLSRSVPAPQAI 138

Query: 444  KILDDEMQCDIIRIGGLVRSKERFIKRRQLLLGSNSSTLKAIEILTNCYVLVQGNTVAAM 623
            KIL+DEM CDII+IG ++R+KERF+KRR+ LLG N STLKAIEILT CY+LVQGNTVAAM
Sbjct: 139  KILNDEMSCDIIKIGSIIRNKERFVKRRERLLGPNLSTLKAIEILTGCYILVQGNTVAAM 198

Query: 624  GSFKGLKQVRRVVEDCIQNKLHPLRHIKEMMVKRELGKRPELATENWDRFLPXXXXXXXX 803
            GS+KGLKQVRRVVEDCI+N  HP+ HIKE+++KREL K P LA E+WDRFLP        
Sbjct: 199  GSWKGLKQVRRVVEDCIKNIKHPVYHIKELLIKRELAKNPALANESWDRFLPKFKKKNVK 258

Query: 804  XXXAISIEKKXXXXXXXXXXXSKIDLQLESGEYFLSDXXXXXXXXXXXXXXXXXXXXXNK 983
                I+ EKK           SKIDL+LESGEYF+SD                     NK
Sbjct: 259  QKKPITKEKKPYTPFPPPQQPSKIDLELESGEYFMSDKKKSAKKWQEKLEKQSEKAEENK 318

Query: 984  RKRDAAFLPPEEHLG--LNSSKFGDGKNDVTDIVMSXXXXXXXXXXXXXVENVNAEDYIA 1157
            RKR+AAF+PP+E       S+K     +++ D+  S              ENV  E Y+A
Sbjct: 319  RKREAAFVPPKEDTATPYESAKSTSNNDEIADMAKSLKKKAKELRKSEAQENVRLESYVA 378