BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00004558
         (685 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284546.1| PREDICTED: cytochrome c-type biogenesis ccda...   225   7e-57
ref|XP_004149294.1| PREDICTED: cytochrome c-type biogenesis ccda...   208   7e-52
ref|XP_002531046.1| Thiol:disulfide interchange protein dsbD pre...   197   2e-48
ref|XP_002330394.1| predicted protein [Populus trichocarpa] gi|2...   197   2e-48
sp|Q2QY07.1|CCDA2_ORYSJ RecName: Full=Cytochrome c-type biogenes...   196   4e-48

>ref|XP_002284546.1| PREDICTED: cytochrome c-type biogenesis ccda-like chloroplastic
           protein 2 [Vitis vinifera] gi|302143076|emb|CBI20371.3|
           unnamed protein product [Vitis vinifera]
          Length = 358

 Score =  225 bits (573), Expect = 7e-57
 Identities = 123/207 (59%), Positives = 149/207 (71%), Gaps = 3/207 (1%)
 Frame = -3

Query: 614 RISSCKHHQTRTNVHMNMMKRSSTDYDVGHDVLASTDAKVNKGFLVKSLXXXXXXXXXV- 438
           + SS KH   +  V + + KRS+   D+  D+++ +  + +  FL+K+            
Sbjct: 18  KFSSHKHETGKYKVPVRVPKRSAMAEDLTQDIVSLSKTEKSGSFLIKTAATSSAFAAANF 77

Query: 437 --PVDSAKALTMENVVEGATSLAMLADINLGDWFGGFLYSSGQQANEAVQDQLSALSFTS 264
               D AKA  +++++EGATS+  LAD ++GDWFGGFLYS+GQQAN AVQDQLSALSFTS
Sbjct: 78  FATTDMAKAANIKDILEGATSVYTLADGSIGDWFGGFLYSAGQQANAAVQDQLSALSFTS 137

Query: 263 LAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAEVIGNSVAFSXXXXXXXXXXXX 84
           LAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGK RAEVIGNSVAFS            
Sbjct: 138 LAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKGRAEVIGNSVAFSLGLATTLAILGV 197

Query: 83  XASFAGKAYGQVGQGLPIAASGLAVLM 3
            ASFAGKAYGQ+GQGLP+AASGLAV+M
Sbjct: 198 AASFAGKAYGQIGQGLPLAASGLAVIM 224


>ref|XP_004149294.1| PREDICTED: cytochrome c-type biogenesis ccda-like chloroplastic
           protein 2-like [Cucumis sativus]
           gi|449528927|ref|XP_004171453.1| PREDICTED: cytochrome
           c-type biogenesis ccda-like chloroplastic protein 2-like
           [Cucumis sativus]
          Length = 362

 Score =  208 bits (530), Expect = 7e-52
 Identities = 124/227 (54%), Positives = 149/227 (65%), Gaps = 9/227 (3%)
 Frame = -3

Query: 656 FSVNGCSSSVPNHGRISSCKHHQTRTNV-----HMNMMKRSSTDYDVGHDVLASTDAKVN 492
           F V+   + + N  +IS+ KH  T  ++     H+  MK   T   V  D     +   N
Sbjct: 3   FLVSNSGAFIINSIQISTSKHPNTPGSLVSLGKHVMPMKFLGTQ-SVADDQCKHIELVKN 61

Query: 491 KG----FLVKSLXXXXXXXXXVPVDSAKALTMENVVEGATSLAMLADINLGDWFGGFLYS 324
           +     F   +          + VD+AKA T++++ EGA S+  LAD  +GDWFGG LYS
Sbjct: 62  RNSRNYFQAMAFVNAISATSFLAVDAAKAETLKHMWEGAASVYTLADGGMGDWFGGILYS 121

Query: 323 SGQQANEAVQDQLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAEV 144
           +GQQAN AVQDQLSALSFTSLAVIFGAG VTSLSPCTLSVLPLTLGYIGAFGSGKS+AEV
Sbjct: 122 AGQQANVAVQDQLSALSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGKSKAEV 181

Query: 143 IGNSVAFSXXXXXXXXXXXXXASFAGKAYGQVGQGLPIAASGLAVLM 3
           +GNSVAFS             ASFAGKAYGQ+GQGLP+AASGLAV+M
Sbjct: 182 VGNSVAFSLGLATTLALLGIGASFAGKAYGQIGQGLPLAASGLAVIM 228


>ref|XP_002531046.1| Thiol:disulfide interchange protein dsbD precursor, putative
           [Ricinus communis] gi|223529374|gb|EEF31339.1|
           Thiol:disulfide interchange protein dsbD precursor,
           putative [Ricinus communis]
          Length = 350

 Score =  197 bits (501), Expect = 2e-48
 Identities = 109/186 (58%), Positives = 136/186 (73%), Gaps = 1/186 (0%)
 Frame = -3

Query: 557 KRSSTDYDVGHDVLASTDAKVNKGFLVKSLXXXXXXXXXVPVDSAKALTMENVVEGATS- 381
           K SST+ ++  +VL+ +         +K++         + +D+AKA++ + ++E AT  
Sbjct: 31  KLSSTNENLRRNVLSLSKNDSRCSSRIKTIATSLAVSNLINIDAAKAVSTDKLLEEATIY 90

Query: 380 LAMLADINLGDWFGGFLYSSGQQANEAVQDQLSALSFTSLAVIFGAGLVTSLSPCTLSVL 201
           +  LAD  +GDW G  LYS+GQQANEAVQDQLSALSFTSLAVIFGAGLVTSLSPCTLSVL
Sbjct: 91  MYTLADGGIGDWLGRLLYSAGQQANEAVQDQLSALSFTSLAVIFGAGLVTSLSPCTLSVL 150

Query: 200 PLTLGYIGAFGSGKSRAEVIGNSVAFSXXXXXXXXXXXXXASFAGKAYGQVGQGLPIAAS 21
           PLTLGYIGAFGSGKSRAEV+ +S+AF+             ASFAGKAYGQ+GQGLP+AAS
Sbjct: 151 PLTLGYIGAFGSGKSRAEVVADSIAFALGLATTLALLGIGASFAGKAYGQIGQGLPLAAS 210

Query: 20  GLAVLM 3
           GLAV+M
Sbjct: 211 GLAVIM 216


>ref|XP_002330394.1| predicted protein [Populus trichocarpa] gi|222871779|gb|EEF08910.1|
           predicted protein [Populus trichocarpa]
          Length = 265

 Score =  197 bits (500), Expect = 2e-48
 Identities = 101/131 (77%), Positives = 112/131 (85%)
 Frame = -3

Query: 395 EGATSLAMLADINLGDWFGGFLYSSGQQANEAVQDQLSALSFTSLAVIFGAGLVTSLSPC 216
           E A S+  LAD ++GDWFGGFLYSSGQQANEAVQDQLSALSFTSLAVIFGAGLVTSLSPC
Sbjct: 1   EEAASVYTLADGSIGDWFGGFLYSSGQQANEAVQDQLSALSFTSLAVIFGAGLVTSLSPC 60

Query: 215 TLSVLPLTLGYIGAFGSGKSRAEVIGNSVAFSXXXXXXXXXXXXXASFAGKAYGQVGQGL 36
           TLSVLPLTLGYIGAFGSGKSRAE++G+S+AF+             ASFAGK YGQ+GQGL
Sbjct: 61  TLSVLPLTLGYIGAFGSGKSRAEIVGDSIAFALGLATTLALLGIAASFAGKTYGQIGQGL 120

Query: 35  PIAASGLAVLM 3
           P+AASGLAV+M
Sbjct: 121 PLAASGLAVIM 131


>sp|Q2QY07.1|CCDA2_ORYSJ RecName: Full=Cytochrome c-type biogenesis ccda-like chloroplastic
           protein 2; AltName: Full=Cytochrome b6f biogenesis
           protein CCDA2; Flags: Precursor
           gi|77552967|gb|ABA95763.1| Cytochrome C biogenesis
           protein transmembrane region containing protein,
           expressed [Oryza sativa Japonica Group]
          Length = 362

 Score =  196 bits (498), Expect = 4e-48
 Identities = 104/142 (73%), Positives = 118/142 (83%)
 Frame = -3

Query: 428 SAKALTMENVVEGATSLAMLADINLGDWFGGFLYSSGQQANEAVQDQLSALSFTSLAVIF 249
           +A A  + + + G++ LA LAD+++GDWFG  LYS+GQQANEAVQDQLSALSFTSLAVIF
Sbjct: 87  AANATEIGDSLLGSSGLA-LADLSIGDWFGNLLYSAGQQANEAVQDQLSALSFTSLAVIF 145

Query: 248 GAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAEVIGNSVAFSXXXXXXXXXXXXXASFA 69
           GAGLVTSLSPCTLSVLPLTLGYIGAFGSGK R+EV+GNSVAFS             ASFA
Sbjct: 146 GAGLVTSLSPCTLSVLPLTLGYIGAFGSGKDRSEVVGNSVAFSLGLATTLAILGVAASFA 205

Query: 68  GKAYGQVGQGLPIAASGLAVLM 3
           GKAYGQVGQGLP+AASGLAV+M
Sbjct: 206 GKAYGQVGQGLPVAASGLAVIM 227