BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00004524
         (578 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002319940.1| predicted protein [Populus trichocarpa] gi|2...   131   7e-29
ref|XP_002892702.1| hypothetical protein ARALYDRAFT_471420 [Arab...   125   5e-27
dbj|BAB01462.1| unnamed protein product [Arabidopsis thaliana]        124   9e-27
ref|XP_002263892.2| PREDICTED: pentatricopeptide repeat-containi...   119   3e-25
ref|NP_197167.1| pentatricopeptide repeat-containing protein [Ar...   115   7e-24

>ref|XP_002319940.1| predicted protein [Populus trichocarpa] gi|222858316|gb|EEE95863.1|
           predicted protein [Populus trichocarpa]
          Length = 555

 Score =  131 bits (330), Expect = 7e-29
 Identities = 73/191 (38%), Positives = 104/191 (54%)
 Frame = -3

Query: 573 DTVTYNSLMDGYCLQGRMKEAKSVFDLMVARGHGPDVVSYNIXXXXXXXXXXXXXXXXXX 394
           D  TYN+LM+GYCL+  + EA+ VF++M+++G  PDV S++I                  
Sbjct: 335 DVATYNTLMNGYCLRMEVVEARKVFEVMISKGRMPDVFSFSILVNGYCKAKRIDEAKQLF 394

Query: 393 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPNTITYSTLIDGFCKSGEVLVAKELLKDM 214
                                          P+T++Y+TLI G C++   L A+EL KDM
Sbjct: 395 DEMTHRGLI----------------------PDTVSYNTLISGLCQARRPLEAEELFKDM 432

Query: 213 IACGEKPNQFTYSSLMDGLFRNGCSAEAMELFRVMENNGMKADVLIYNIIIDGMCKDGKI 34
            + G  PN  TYS L+D L + G   +AM LFR MEN+G+K D++ YNI+IDGMCK GK 
Sbjct: 433 HSNGYPPNLVTYSILLDCLSKQGYLDQAMGLFRAMENSGLKPDLVTYNIMIDGMCKYGKF 492

Query: 33  SEAKEIFRTLS 1
            +A+E+F  LS
Sbjct: 493 KDARELFAELS 503



 Score = 88.2 bits (217), Expect = 9e-16
 Identities = 52/191 (27%), Positives = 92/191 (48%)
 Frame = -3

Query: 573 DTVTYNSLMDGYCLQGRMKEAKSVFDLMVARGHGPDVVSYNIXXXXXXXXXXXXXXXXXX 394
           + +T+++L++G+C++G++  A  +FD+MVARG+ P+V SY+I                  
Sbjct: 160 NVITFSTLINGFCIEGKIGRAIELFDVMVARGYKPNVHSYSIIIKGLCRVGKTTEVIKLL 219

Query: 393 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPNTITYSTLIDGFCKSGEVLVAKELLKDM 214
                                          P+ + Y+T++D  CK   V  A  +   M
Sbjct: 220 EHMKVVGCE----------------------PDVVIYNTIVDRLCKDRLVNEAVHIFCKM 257

Query: 213 IACGEKPNQFTYSSLMDGLFRNGCSAEAMELFRVMENNGMKADVLIYNIIIDGMCKDGKI 34
              G  P   TY+SL+ GL   G   EA  L   M+   +  D++ ++++ID MCK+G++
Sbjct: 258 KGTGILPTVVTYTSLIHGLRNLGRWKEAFGLLNEMKGGNIMPDLVAFSVLIDIMCKEGEV 317

Query: 33  SEAKEIFRTLS 1
           SEA+ I +T++
Sbjct: 318 SEARVILKTMT 328



 Score = 87.0 bits (214), Expect = 2e-15
 Identities = 45/96 (46%), Positives = 63/96 (65%)
 Frame = -3

Query: 300 PNTITYSTLIDGFCKSGEVLVAKELLKDMIACGEKPNQFTYSSLMDGLFRNGCSAEAMEL 121
           PN IT+STLI+GFC  G++  A EL   M+A G KPN  +YS ++ GL R G + E ++L
Sbjct: 159 PNVITFSTLINGFCIEGKIGRAIELFDVMVARGYKPNVHSYSIIIKGLCRVGKTTEVIKL 218

Query: 120 FRVMENNGMKADVLIYNIIIDGMCKDGKISEAKEIF 13
              M+  G + DV+IYN I+D +CKD  ++EA  IF
Sbjct: 219 LEHMKVVGCEPDVVIYNTIVDRLCKDRLVNEAVHIF 254



 Score = 80.9 bits (198), Expect = 1e-13
 Identities = 55/190 (28%), Positives = 82/190 (43%)
 Frame = -3

Query: 573 DTVTYNSLMDGYCLQGRMKEAKSVFDLMVARGHGPDVVSYNIXXXXXXXXXXXXXXXXXX 394
           D  +++ L++GYC   R+ EAK +FD M  RG  PD VSYN                   
Sbjct: 370 DVFSFSILVNGYCKAKRIDEAKQLFDEMTHRGLIPDTVSYNTLISGLCQARRPLEAEELF 429

Query: 393 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPNTITYSTLIDGFCKSGEVLVAKELLKDM 214
                                          PN +TYS L+D   K G +  A  L + M
Sbjct: 430 KDMHSNGYP----------------------PNLVTYSILLDCLSKQGYLDQAMGLFRAM 467

Query: 213 IACGEKPNQFTYSSLMDGLFRNGCSAEAMELFRVMENNGMKADVLIYNIIIDGMCKDGKI 34
              G KP+  TY+ ++DG+ + G   +A ELF  +   G++ +  +    IDG+CK G +
Sbjct: 468 ENSGLKPDLVTYNIMIDGMCKYGKFKDARELFAELSVKGLQPNNWVCTPTIDGVCKGGLL 527

Query: 33  SEAKEIFRTL 4
            EA + FR +
Sbjct: 528 DEAHKAFRQM 537



 Score = 78.2 bits (191), Expect = 9e-13
 Identities = 53/187 (28%), Positives = 80/187 (42%)
 Frame = -3

Query: 573 DTVTYNSLMDGYCLQGRMKEAKSVFDLMVARGHGPDVVSYNIXXXXXXXXXXXXXXXXXX 394
           D V YN+++D  C    + EA  +F  M   G  P VV+Y                    
Sbjct: 230 DVVIYNTIVDRLCKDRLVNEAVHIFCKMKGTGILPTVVTYT------------------- 270

Query: 393 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPNTITYSTLIDGFCKSGEVLVAKELLKDM 214
                                          P+ + +S LID  CK GEV  A+ +LK M
Sbjct: 271 ---SLIHGLRNLGRWKEAFGLLNEMKGGNIMPDLVAFSVLIDIMCKEGEVSEARVILKTM 327

Query: 213 IACGEKPNQFTYSSLMDGLFRNGCSAEAMELFRVMENNGMKADVLIYNIIIDGMCKDGKI 34
              G +P+  TY++LM+G        EA ++F VM + G   DV  ++I+++G CK  +I
Sbjct: 328 TEMGVEPDVATYNTLMNGYCLRMEVVEARKVFEVMISKGRMPDVFSFSILVNGYCKAKRI 387

Query: 33  SEAKEIF 13
            EAK++F
Sbjct: 388 DEAKQLF 394



 Score = 71.6 bits (174), Expect = 9e-11
 Identities = 49/188 (26%), Positives = 86/188 (45%)
 Frame = -3

Query: 567 VTYNSLMDGYCLQGRMKEAKSVFDLMVARGHGPDVVSYNIXXXXXXXXXXXXXXXXXXXX 388
           VTY SL+ G    GR KEA  + + M      PD+V++++                    
Sbjct: 267 VTYTSLIHGLRNLGRWKEAFGLLNEMKGGNIMPDLVAFSVLIDIMCKEGEVSEARVILKT 326

Query: 387 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXPNTITYSTLIDGFCKSGEVLVAKELLKDMIA 208
                                        P+  TY+TL++G+C   EV+ A+++ + MI+
Sbjct: 327 MTEMGVE----------------------PDVATYNTLMNGYCLRMEVVEARKVFEVMIS 364

Query: 207 CGEKPNQFTYSSLMDGLFRNGCSAEAMELFRVMENNGMKADVLIYNIIIDGMCKDGKISE 28
            G  P+ F++S L++G  +     EA +LF  M + G+  D + YN +I G+C+  +  E
Sbjct: 365 KGRMPDVFSFSILVNGYCKAKRIDEAKQLFDEMTHRGLIPDTVSYNTLISGLCQARRPLE 424

Query: 27  AKEIFRTL 4
           A+E+F+ +
Sbjct: 425 AEELFKDM 432



 Score = 58.9 bits (141), Expect = 6e-07
 Identities = 33/90 (36%), Positives = 52/90 (57%)
 Frame = -3

Query: 297 NTITYSTLIDGFCKSGEVLVAKELLKDMIACGEKPNQFTYSSLMDGLFRNGCSAEAMELF 118
           + ++ + LI+ FC+   V     +L  +I  G +PN  T+S+L++G    G    A+ELF
Sbjct: 125 DVLSLTILINCFCRLCHVDYGFSVLGKIIKLGLEPNVITFSTLINGFCIEGKIGRAIELF 184

Query: 117 RVMENNGMKADVLIYNIIIDGMCKDGKISE 28
            VM   G K +V  Y+III G+C+ GK +E
Sbjct: 185 DVMVARGYKPNVHSYSIIIKGLCRVGKTTE 214


>ref|XP_002892702.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata] gi|297338544|gb|EFH68961.1| hypothetical protein
           ARALYDRAFT_471420 [Arabidopsis lyrata subsp. lyrata]
          Length = 667

 Score =  125 bits (314), Expect = 5e-27
 Identities = 65/190 (34%), Positives = 101/190 (53%)
 Frame = -3

Query: 573 DTVTYNSLMDGYCLQGRMKEAKSVFDLMVARGHGPDVVSYNIXXXXXXXXXXXXXXXXXX 394
           +T+TYNSLMDGYC+Q R+ EA ++ DLMV     PD+V++                    
Sbjct: 309 NTITYNSLMDGYCMQNRLSEANNMLDLMVRNNCSPDIVTFT------------------- 349

Query: 393 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPNTITYSTLIDGFCKSGEVLVAKELLKDM 214
                                           NT+TYS L+ GFC+SG++ +A+EL ++M
Sbjct: 350 ---SLIKGYCKVKRVDEGMKLFRKISKRGLVANTVTYSILVQGFCQSGKLEIAEELFQEM 406

Query: 213 IACGEKPNQFTYSSLMDGLFRNGCSAEAMELFRVMENNGMKADVLIYNIIIDGMCKDGKI 34
           ++ G  P+  TY  L+DGL  NG   +A+E+F  ++ + M  D+++Y III+GMCK GK+
Sbjct: 407 VSLGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMNLDIVMYTIIIEGMCKGGKV 466

Query: 33  SEAKEIFRTL 4
            +A  +F +L
Sbjct: 467 EDAWNLFCSL 476



 Score = 89.4 bits (220), Expect = 4e-16
 Identities = 37/100 (37%), Positives = 68/100 (68%)
 Frame = -3

Query: 300 PNTITYSTLIDGFCKSGEVLVAKELLKDMIACGEKPNQFTYSSLMDGLFRNGCSAEAMEL 121
           PN +TY+++++G CKSG+  +A +LL+ M     K + FTYS+++D L R+GC   A+ L
Sbjct: 168 PNVVTYNSIVNGICKSGDTSLALDLLRKMDERNVKADVFTYSTIIDSLCRDGCIDAAISL 227

Query: 120 FRVMENNGMKADVLIYNIIIDGMCKDGKISEAKEIFRTLS 1
           F+ ME  G+K+ ++ YN ++ G+CK GK ++  ++ + ++
Sbjct: 228 FKEMETKGIKSSLVTYNSLVGGLCKAGKWNDGVQLLKDMT 267



 Score = 84.0 bits (206), Expect = 2e-14
 Identities = 61/226 (26%), Positives = 91/226 (40%), Gaps = 35/226 (15%)
 Frame = -3

Query: 576 ADTVTYNSLMDGYCLQGRMKEAKSVFDLMVARGHGPDVVSYNIXXXXXXXXXXXXXXXXX 397
           AD  TY++++D  C  G +  A S+F  M  +G    +V+YN                  
Sbjct: 203 ADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSLVTYN------------------ 244

Query: 396 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPNTITYSTLIDGFCKSGEVLVAKELLKD 217
                                           PN IT++ LID F K G++  A EL K+
Sbjct: 245 ----SLVGGLCKAGKWNDGVQLLKDMTSRKIIPNVITFNVLIDVFVKEGKLQEANELYKE 300

Query: 216 MIACGEKPNQFTYSSLMDG----------------LFRNGCSA----------------- 136
           MI  G  PN  TY+SLMDG                + RN CS                  
Sbjct: 301 MITKGISPNTITYNSLMDGYCMQNRLSEANNMLDLMVRNNCSPDIVTFTSLIKGYCKVKR 360

Query: 135 --EAMELFRVMENNGMKADVLIYNIIIDGMCKDGKISEAKEIFRTL 4
             E M+LFR +   G+ A+ + Y+I++ G C+ GK+  A+E+F+ +
Sbjct: 361 VDEGMKLFRKISKRGLVANTVTYSILVQGFCQSGKLEIAEELFQEM 406



 Score = 81.3 bits (199), Expect = 1e-13
 Identities = 38/99 (38%), Positives = 65/99 (65%)
 Frame = -3

Query: 300 PNTITYSTLIDGFCKSGEVLVAKELLKDMIACGEKPNQFTYSSLMDGLFRNGCSAEAMEL 121
           P+T T++TLI+G C   +V  A  L+  M+  G +PN  TY+S+++G+ ++G ++ A++L
Sbjct: 133 PDTTTFNTLINGLCLESKVSEAVVLVARMVENGCQPNVVTYNSIVNGICKSGDTSLALDL 192

Query: 120 FRVMENNGMKADVLIYNIIIDGMCKDGKISEAKEIFRTL 4
            R M+   +KADV  Y+ IID +C+DG I  A  +F+ +
Sbjct: 193 LRKMDERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEM 231



 Score = 74.3 bits (181), Expect = 1e-11
 Identities = 49/191 (25%), Positives = 84/191 (43%)
 Frame = -3

Query: 576 ADTVTYNSLMDGYCLQGRMKEAKSVFDLMVARGHGPDVVSYNIXXXXXXXXXXXXXXXXX 397
           A+TVTY+ L+ G+C  G+++ A+ +F  MV+ G  PDV++Y I                 
Sbjct: 378 ANTVTYSILVQGFCQSGKLEIAEELFQEMVSLGVLPDVMTYGILLDGLCDNGKLEKALEI 437

Query: 396 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPNTITYSTLIDGFCKSGEVLVAKELLKD 217
                                            + + Y+ +I+G CK G+V  A  L   
Sbjct: 438 FEDLQKSKMNL----------------------DIVMYTIIIEGMCKGGKVEDAWNLFCS 475

Query: 216 MIACGEKPNQFTYSSLMDGLFRNGCSAEAMELFRVMENNGMKADVLIYNIIIDGMCKDGK 37
           +   G KPN  TY+ ++ GL + G  +EA  L R ME +G + +   YN +I    +DG 
Sbjct: 476 LPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNEPNDCTYNTLIRAHLRDGD 535

Query: 36  ISEAKEIFRTL 4
           ++ + ++   +
Sbjct: 536 LTASAKLIEEM 546



 Score = 61.6 bits (148), Expect = 9e-08
 Identities = 42/172 (24%), Positives = 68/172 (39%)
 Frame = -3

Query: 573 DTVTYNSLMDGYCLQGRMKEAKSVFDLMVARGHGPDVVSYNIXXXXXXXXXXXXXXXXXX 394
           D +TY  L+DG C  G++++A  +F+ +       D+V Y I                  
Sbjct: 414 DVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMNLDIVMYTIIIEGMCKGGKVEDAWNLF 473

Query: 393 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPNTITYSTLIDGFCKSGEVLVAKELLKDM 214
                                          PN +TY+ +I G CK G +  A  LL+ M
Sbjct: 474 CSLPCKGVK----------------------PNVMTYTVMISGLCKKGSLSEANILLRKM 511

Query: 213 IACGEKPNQFTYSSLMDGLFRNGCSAEAMELFRVMENNGMKADVLIYNIIID 58
              G +PN  TY++L+    R+G    + +L   M++ G  AD     ++ID
Sbjct: 512 EEDGNEPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVID 563



 Score = 58.2 bits (139), Expect = 1e-06
 Identities = 30/98 (30%), Positives = 56/98 (57%)
 Frame = -3

Query: 297 NTITYSTLIDGFCKSGEVLVAKELLKDMIACGEKPNQFTYSSLMDGLFRNGCSAEAMELF 118
           N  T + +I+ FC+  +   A  +L  ++  G +P+  T+++L++GL      +EA+ L 
Sbjct: 99  NIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLESKVSEAVVLV 158

Query: 117 RVMENNGMKADVLIYNIIIDGMCKDGKISEAKEIFRTL 4
             M  NG + +V+ YN I++G+CK G  S A ++ R +
Sbjct: 159 ARMVENGCQPNVVTYNSIVNGICKSGDTSLALDLLRKM 196


>dbj|BAB01462.1| unnamed protein product [Arabidopsis thaliana]
          Length = 648

 Score =  124 bits (312), Expect = 9e-27
 Identities = 70/191 (36%), Positives = 102/191 (53%)
 Frame = -3

Query: 573 DTVTYNSLMDGYCLQGRMKEAKSVFDLMVARGHGPDVVSYNIXXXXXXXXXXXXXXXXXX 394
           DT+TYNSL+DG+C +  + EA  +FDLMV++G  PD+V+Y+I                  
Sbjct: 378 DTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLF 437

Query: 393 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPNTITYSTLIDGFCKSGEVLVAKELLKDM 214
                                          PNTITY+TL+ GFC+SG++  AKEL ++M
Sbjct: 438 REISSKGLI----------------------PNTITYNTLVLGFCQSGKLNAAKELFQEM 475

Query: 213 IACGEKPNQFTYSSLMDGLFRNGCSAEAMELFRVMENNGMKADVLIYNIIIDGMCKDGKI 34
           ++ G  P+  TY  L+DGL  NG   +A+E+F  M+ + M   + IYNIII GMC   K+
Sbjct: 476 VSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKV 535

Query: 33  SEAKEIFRTLS 1
            +A  +F +LS
Sbjct: 536 DDAWSLFCSLS 546



 Score = 90.5 bits (223), Expect = 2e-16
 Identities = 54/192 (28%), Positives = 88/192 (45%)
 Frame = -3

Query: 576 ADTVTYNSLMDGYCLQGRMKEAKSVFDLMVARGHGPDVVSYNIXXXXXXXXXXXXXXXXX 397
           A  V Y+ ++D  C  G   +A S+F+ M  +G   DVV+Y+                  
Sbjct: 272 ASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYS------------------ 313

Query: 396 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPNTITYSTLIDGFCKSGEVLVAKELLKD 217
                                           P+ +T+S LID F K G++L AKEL  +
Sbjct: 314 ----SLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNE 369

Query: 216 MIACGEKPNQFTYSSLMDGLFRNGCSAEAMELFRVMENNGMKADVLIYNIIIDGMCKDGK 37
           MI  G  P+  TY+SL+DG  +  C  EA ++F +M + G + D++ Y+I+I+  CK  +
Sbjct: 370 MITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKR 429

Query: 36  ISEAKEIFRTLS 1
           + +   +FR +S
Sbjct: 430 VDDGMRLFREIS 441



 Score = 86.7 bits (213), Expect = 3e-15
 Identities = 51/190 (26%), Positives = 89/190 (46%)
 Frame = -3

Query: 573 DTVTYNSLMDGYCLQGRMKEAKSVFDLMVARGHGPDVVSYNIXXXXXXXXXXXXXXXXXX 394
           DT+T+++L++G+CL+GR+ EA ++ D MV     PD+V+ +                   
Sbjct: 168 DTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLI 227

Query: 393 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPNTITYSTLIDGFCKSGEVLVAKELLKDM 214
                                          P+ +TY  +++  CKSG   +A +L + M
Sbjct: 228 DRMVEYGFQ----------------------PDEVTYGPVLNRLCKSGNSALALDLFRKM 265

Query: 213 IACGEKPNQFTYSSLMDGLFRNGCSAEAMELFRVMENNGMKADVLIYNIIIDGMCKDGKI 34
                K +   YS ++D L ++G   +A+ LF  ME  G+KADV+ Y+ +I G+C DGK 
Sbjct: 266 EERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKW 325

Query: 33  SEAKEIFRTL 4
            +  ++ R +
Sbjct: 326 DDGAKMLREM 335



 Score = 82.0 bits (201), Expect = 6e-14
 Identities = 51/191 (26%), Positives = 87/191 (45%)
 Frame = -3

Query: 576 ADTVTYNSLMDGYCLQGRMKEAKSVFDLMVARGHGPDVVSYNIXXXXXXXXXXXXXXXXX 397
           AD VTY+SL+ G C  G+  +   +   M+ R   PDVV+++                  
Sbjct: 307 ADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKEL 366

Query: 396 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPNTITYSTLIDGFCKSGEVLVAKELLKD 217
                                           P+TITY++LIDGFCK   +  A ++   
Sbjct: 367 YNEMITRGIA----------------------PDTITYNSLIDGFCKENCLHEANQMFDL 404

Query: 216 MIACGEKPNQFTYSSLMDGLFRNGCSAEAMELFRVMENNGMKADVLIYNIIIDGMCKDGK 37
           M++ G +P+  TYS L++   +     + M LFR + + G+  + + YN ++ G C+ GK
Sbjct: 405 MVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGK 464

Query: 36  ISEAKEIFRTL 4
           ++ AKE+F+ +
Sbjct: 465 LNAAKELFQEM 475


>ref|XP_002263892.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Vitis vinifera]
          Length = 539

 Score =  119 bits (299), Expect = 3e-25
 Identities = 71/191 (37%), Positives = 94/191 (49%)
 Frame = -3

Query: 573 DTVTYNSLMDGYCLQGRMKEAKSVFDLMVARGHGPDVVSYNIXXXXXXXXXXXXXXXXXX 394
           D VTY +LMDG+CL+  M EA  VFD+MV  G   +VVSYN                   
Sbjct: 265 DVVTYAALMDGHCLRSEMDEAVKVFDMMVRNGCVCNVVSYNTLINGYCKIQRIDKAMYLF 324

Query: 393 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPNTITYSTLIDGFCKSGEVLVAKELLKDM 214
                                          PNT+TYSTLI G C  G +  A  L  +M
Sbjct: 325 EEMCRQELI----------------------PNTMTYSTLIHGLCHVGRLQDAIALFNEM 362

Query: 213 IACGEKPNQFTYSSLMDGLFRNGCSAEAMELFRVMENNGMKADVLIYNIIIDGMCKDGKI 34
           +ACG+ PN  TYS L+D L +N   AEAM L + +E + +  DV +YNI IDGMC+ G +
Sbjct: 363 VACGQIPNLVTYSILLDYLCKNHRLAEAMALLKAIEGSNLDPDVQVYNIAIDGMCRAGDL 422

Query: 33  SEAKEIFRTLS 1
             A+++F  L+
Sbjct: 423 EAARDLFSNLA 433



 Score = 84.3 bits (207), Expect = 1e-14
 Identities = 51/190 (26%), Positives = 87/190 (45%)
 Frame = -3

Query: 573 DTVTYNSLMDGYCLQGRMKEAKSVFDLMVARGHGPDVVSYNIXXXXXXXXXXXXXXXXXX 394
           + VTY +LM+G C   ++ EA ++F  M+A+G  PD+ +YN                   
Sbjct: 160 NVVTYGTLMNGLCKDRQLTEALNLFSEMIAKGISPDIFTYN------------------- 200

Query: 393 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPNTITYSTLIDGFCKSGEVLVAKELLKDM 214
                                          PN ++ + ++D  CK G+V  A +++  M
Sbjct: 201 ---SLIHALCNLCEWKHVTTLLNEMVKSKIMPNVVSLNIVVDALCKEGKVTEAHDVVDMM 257

Query: 213 IACGEKPNQFTYSSLMDGLFRNGCSAEAMELFRVMENNGMKADVLIYNIIIDGMCKDGKI 34
           I  G +P+  TY++LMDG        EA+++F +M  NG   +V+ YN +I+G CK  +I
Sbjct: 258 IQGGVEPDVVTYAALMDGHCLRSEMDEAVKVFDMMVRNGCVCNVVSYNTLINGYCKIQRI 317

Query: 33  SEAKEIFRTL 4
            +A  +F  +
Sbjct: 318 DKAMYLFEEM 327



 Score = 77.8 bits (190), Expect = 1e-12
 Identities = 48/190 (25%), Positives = 90/190 (47%)
 Frame = -3

Query: 573 DTVTYNSLMDGYCLQGRMKEAKSVFDLMVARGHGPDVVSYNIXXXXXXXXXXXXXXXXXX 394
           +T+TY++L+ G C  GR+++A ++F+ MVA G  P++V+Y+I                  
Sbjct: 335 NTMTYSTLIHGLCHVGRLQDAIALFNEMVACGQIPNLVTYSILLDYLCKNHRLAEAMALL 394

Query: 393 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPNTITYSTLIDGFCKSGEVLVAKELLKDM 214
                                          P+   Y+  IDG C++G++  A++L  ++
Sbjct: 395 KAIEGSNLD----------------------PDVQVYNIAIDGMCRAGDLEAARDLFSNL 432

Query: 213 IACGEKPNQFTYSSLMDGLFRNGCSAEAMELFRVMENNGMKADVLIYNIIIDGMCKDGKI 34
              G +P+ +T++ ++ GL + G   EA +LFR M+ NG   +   YN I  G+ ++ K 
Sbjct: 433 APRGLQPDVWTHNIMIRGLCKRGLLDEASKLFREMDENGCLRNGCTYNTITQGLLQNNKT 492

Query: 33  SEAKEIFRTL 4
           S A ++   +
Sbjct: 493 SRAIQLLEEM 502



 Score = 72.0 bits (175), Expect = 7e-11
 Identities = 49/190 (25%), Positives = 83/190 (43%)
 Frame = -3

Query: 573 DTVTYNSLMDGYCLQGRMKEAKSVFDLMVARGHGPDVVSYNIXXXXXXXXXXXXXXXXXX 394
           + V+YN+L++GYC   R+ +A  +F+ M  +   P+ ++Y+                   
Sbjct: 300 NVVSYNTLINGYCKIQRIDKAMYLFEEMCRQELIPNTMTYSTLIHGLCHVGRLQDAIALF 359

Query: 393 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPNTITYSTLIDGFCKSGEVLVAKELLKDM 214
                                          PN +TYS L+D  CK+  +  A  LLK +
Sbjct: 360 NEMVACGQI----------------------PNLVTYSILLDYLCKNHRLAEAMALLKAI 397

Query: 213 IACGEKPNQFTYSSLMDGLFRNGCSAEAMELFRVMENNGMKADVLIYNIIIDGMCKDGKI 34
                 P+   Y+  +DG+ R G    A +LF  +   G++ DV  +NI+I G+CK G +
Sbjct: 398 EGSNLDPDVQVYNIAIDGMCRAGDLEAARDLFSNLAPRGLQPDVWTHNIMIRGLCKRGLL 457

Query: 33  SEAKEIFRTL 4
            EA ++FR +
Sbjct: 458 DEASKLFREM 467



 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 35/130 (26%)
 Frame = -3

Query: 300 PNTITYSTLIDGFCKSGEVLVAKELLKDMIACGEKPNQFTYSSLMDGLFRNGCSAEAMEL 121
           P+T T++TL+ G C  G++  A ++   M+  G +PN  TY +LM+GL ++    EA+ L
Sbjct: 124 PDTATFTTLVRGLCVVGKIGEALDVFDKMVGEGFQPNVVTYGTLMNGLCKDRQLTEALNL 183

Query: 120 FRVMENNGMKADVLIY-----------------------------------NIIIDGMCK 46
           F  M   G+  D+  Y                                   NI++D +CK
Sbjct: 184 FSEMIAKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVKSKIMPNVVSLNIVVDALCK 243

Query: 45  DGKISEAKEI 16
           +GK++EA ++
Sbjct: 244 EGKVTEAHDV 253


>ref|NP_197167.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75171647|sp|Q9FMD3.1|PP389_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At5g16640, mitochondrial; Flags: Precursor
           gi|10176973|dbj|BAB10191.1| unnamed protein product
           [Arabidopsis thaliana] gi|110737318|dbj|BAF00605.1|
           hypothetical protein [Arabidopsis thaliana]
           gi|332004938|gb|AED92321.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 504

 Score =  115 bits (287), Expect = 7e-24
 Identities = 64/191 (33%), Positives = 101/191 (52%)
 Frame = -3

Query: 573 DTVTYNSLMDGYCLQGRMKEAKSVFDLMVARGHGPDVVSYNIXXXXXXXXXXXXXXXXXX 394
           D VTY+ L+ G C+  R+ EA+ +F  MV++G  PDVV+Y+I                  
Sbjct: 290 DIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLF 349

Query: 393 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPNTITYSTLIDGFCKSGEVLVAKELLKDM 214
                                           NT+TY+ LI G+C++G++ VA+E+ + M
Sbjct: 350 CEMSQRGVVR----------------------NTVTYTILIQGYCRAGKLNVAEEIFRRM 387

Query: 213 IACGEKPNQFTYSSLMDGLFRNGCSAEAMELFRVMENNGMKADVLIYNIIIDGMCKDGKI 34
           + CG  PN  TY+ L+ GL  NG   +A+ +   M+ NGM AD++ YNIII GMCK G++
Sbjct: 388 VFCGVHPNIITYNVLLHGLCDNGKIEKALVILADMQKNGMDADIVTYNIIIRGMCKAGEV 447

Query: 33  SEAKEIFRTLS 1
           ++A +I+ +L+
Sbjct: 448 ADAWDIYCSLN 458



 Score = 77.8 bits (190), Expect = 1e-12
 Identities = 48/185 (25%), Positives = 82/185 (44%)
 Frame = -3

Query: 567 VTYNSLMDGYCLQGRMKEAKSVFDLMVARGHGPDVVSYNIXXXXXXXXXXXXXXXXXXXX 388
           VT+ SL++G+C   R+ +A  +FD MV  G+ P+VV YN                     
Sbjct: 152 VTFGSLLNGFCRGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNR 211

Query: 387 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXPNTITYSTLIDGFCKSGEVLVAKELLKDMIA 208
                                        P+ +TY++LI G C SG    A  ++  M  
Sbjct: 212 MEKDGIG----------------------PDVVTYNSLISGLCSSGRWSDATRMVSCMTK 249

Query: 207 CGEKPNQFTYSSLMDGLFRNGCSAEAMELFRVMENNGMKADVLIYNIIIDGMCKDGKISE 28
               P+ FT+++L+D   + G  +EA E +  M    +  D++ Y+++I G+C   ++ E
Sbjct: 250 REIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDE 309

Query: 27  AKEIF 13
           A+E+F
Sbjct: 310 AEEMF 314



 Score = 77.8 bits (190), Expect = 1e-12
 Identities = 53/190 (27%), Positives = 80/190 (42%)
 Frame = -3

Query: 573 DTVTYNSLMDGYCLQGRMKEAKSVFDLMVARGHGPDVVSYNIXXXXXXXXXXXXXXXXXX 394
           D VTYNSL+ G C  GR  +A  +   M  R   PDV ++N                   
Sbjct: 220 DVVTYNSLISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFY 279

Query: 393 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPNTITYSTLIDGFCKSGEVLVAKELLKDM 214
                                          P+ +TYS LI G C    +  A+E+   M
Sbjct: 280 EEMIRRSLD----------------------PDIVTYSLLIYGLCMYSRLDEAEEMFGFM 317

Query: 213 IACGEKPNQFTYSSLMDGLFRNGCSAEAMELFRVMENNGMKADVLIYNIIIDGMCKDGKI 34
           ++ G  P+  TYS L++G  ++      M+LF  M   G+  + + Y I+I G C+ GK+
Sbjct: 318 VSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKL 377

Query: 33  SEAKEIFRTL 4
           + A+EIFR +
Sbjct: 378 NVAEEIFRRM 387



 Score = 73.6 bits (179), Expect = 2e-11
 Identities = 52/191 (27%), Positives = 79/191 (41%)
 Frame = -3

Query: 573 DTVTYNSLMDGYCLQGRMKEAKSVFDLMVARGHGPDVVSYNIXXXXXXXXXXXXXXXXXX 394
           + V YN+++DG C   ++  A  + + M   G GPDVV+YN                   
Sbjct: 185 NVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYN------------------- 225

Query: 393 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPNTITYSTLIDGFCKSGEVLVAKELLKDM 214
                                          P+  T++ LID   K G V  A+E  ++M
Sbjct: 226 ---SLISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEM 282

Query: 213 IACGEKPNQFTYSSLMDGLFRNGCSAEAMELFRVMENNGMKADVLIYNIIIDGMCKDGKI 34
           I     P+  TYS L+ GL       EA E+F  M + G   DV+ Y+I+I+G CK  K+
Sbjct: 283 IRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKV 342

Query: 33  SEAKEIFRTLS 1
               ++F  +S
Sbjct: 343 EHGMKLFCEMS 353



 Score = 73.2 bits (178), Expect = 3e-11
 Identities = 37/99 (37%), Positives = 58/99 (58%)
 Frame = -3

Query: 300 PNTITYSTLIDGFCKSGEVLVAKELLKDMIACGEKPNQFTYSSLMDGLFRNGCSAEAMEL 121
           PN + Y+T+IDG CKS +V  A +LL  M   G  P+  TY+SL+ GL  +G  ++A  +
Sbjct: 184 PNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRM 243

Query: 120 FRVMENNGMKADVLIYNIIIDGMCKDGKISEAKEIFRTL 4
              M    +  DV  +N +ID   K+G++SEA+E +  +
Sbjct: 244 VSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEM 282



 Score = 72.8 bits (177), Expect = 4e-11
 Identities = 32/92 (34%), Positives = 56/92 (60%)
 Frame = -3

Query: 300 PNTITYSTLIDGFCKSGEVLVAKELLKDMIACGEKPNQFTYSSLMDGLFRNGCSAEAMEL 121
           P+ +T+ +L++GFC+   V  A  +   M+  G KPN   Y++++DGL ++     A++L
Sbjct: 149 PSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDL 208

Query: 120 FRVMENNGMKADVLIYNIIIDGMCKDGKISEA 25
              ME +G+  DV+ YN +I G+C  G+ S+A
Sbjct: 209 LNRMEKDGIGPDVVTYNSLISGLCSSGRWSDA 240



 Score = 65.1 bits (157), Expect = 8e-09
 Identities = 32/98 (32%), Positives = 55/98 (56%)
 Frame = -3

Query: 297 NTITYSTLIDGFCKSGEVLVAKELLKDMIACGEKPNQFTYSSLMDGLFRNGCSAEAMELF 118
           N  T + L++ FC+  ++ +A   L  MI  G +P+  T+ SL++G  R     +A+ +F
Sbjct: 115 NLCTCNILLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMF 174

Query: 117 RVMENNGMKADVLIYNIIIDGMCKDGKISEAKEIFRTL 4
             M   G K +V+IYN IIDG+CK  ++  A ++   +
Sbjct: 175 DQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRM 212



 Score = 61.6 bits (148), Expect = 9e-08
 Identities = 45/190 (23%), Positives = 78/190 (41%)
 Frame = -3

Query: 573 DTVTYNSLMDGYCLQGRMKEAKSVFDLMVARGHGPDVVSYNIXXXXXXXXXXXXXXXXXX 394
           D VTY+ L++GYC   +++    +F  M  RG   + V+Y I                  
Sbjct: 325 DVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIF 384

Query: 393 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPNTITYSTLIDGFCKSGEVLVAKELLKDM 214
                                          PN ITY+ L+ G C +G++  A  +L DM
Sbjct: 385 RRMVFCGVH----------------------PNIITYNVLLHGLCDNGKIEKALVILADM 422

Query: 213 IACGEKPNQFTYSSLMDGLFRNGCSAEAMELFRVMENNGMKADVLIYNIIIDGMCKDGKI 34
              G   +  TY+ ++ G+ + G  A+A +++  +   G+  D+  Y  ++ G+ K G  
Sbjct: 423 QKNGMDADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQGLMPDIWTYTTMMLGLYKKGLR 482

Query: 33  SEAKEIFRTL 4
            EA  +FR +
Sbjct: 483 READALFRKM 492