BLASTX nr result
ID: Coptis23_contig00004379
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00004379
(1896 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002524221.1| Serine/threonine-protein kinase Nek8, putati... 660 0.0
ref|XP_003538429.1| PREDICTED: probable E3 ubiquitin-protein lig... 657 0.0
ref|XP_003552762.1| PREDICTED: probable E3 ubiquitin-protein lig... 644 0.0
ref|XP_003552763.1| PREDICTED: probable E3 ubiquitin-protein lig... 622 e-176
ref|XP_003600756.1| RCC1 and BTB domain-containing protein [Medi... 618 e-174
>ref|XP_002524221.1| Serine/threonine-protein kinase Nek8, putative [Ricinus communis]
gi|223536498|gb|EEF38145.1| Serine/threonine-protein
kinase Nek8, putative [Ricinus communis]
Length = 476
Score = 660 bits (1704), Expect = 0.0
Identities = 336/532 (63%), Positives = 388/532 (72%), Gaps = 6/532 (1%)
Frame = +3
Query: 75 GHTKNSGKMKE--SSKLVMMCGYLPGVSPQRSPLITPVVVRLPEVYSDSWKDVSRGGCGF 248
G K KM+E KLV M GYLPG PQRSP+++PVVVR SWKDV GGCGF
Sbjct: 3 GEGKEVMKMEEMVKEKLVFMWGYLPGALPQRSPILSPVVVRADGY---SWKDVCGGGCGF 59
Query: 249 AMAISELGKLITWGSTDDMGLSYVTSGKHGELPEPFPLPTEASIVKAAAGWAHCVAVTDA 428
AMAISE GKLITWGSTDD+G SYVTSGKHGE+PEPFPLPTEASI+KAAAGWAHC+A TD
Sbjct: 60 AMAISESGKLITWGSTDDLGQSYVTSGKHGEIPEPFPLPTEASIMKAAAGWAHCIAATDT 119
Query: 429 GEVYTWGWKECVPTGKMIGSQSM----ENDVLERNTSLLTEQVSPQSQVSKTSGSVSGFD 596
GEVYTWGWKEC+P+GK+ G S+ E DV ER++ LTEQVSP+SQ S+++G G D
Sbjct: 120 GEVYTWGWKECIPSGKVFGDPSVAGGTEKDVFERHSPFLTEQVSPRSQSSRSTG---GID 176
Query: 597 SRGGAEENTKRRRISSAKHAPESSTSGDETQAALPCIVTLNPGVKIATVAAGGRHTLALS 776
RG +E+TKRRRISSAK + ESS+SGDET +ALPC+VTLNPGV+I TVAAGGRHTLALS
Sbjct: 177 GRGSGDESTKRRRISSAKQSAESSSSGDETLSALPCLVTLNPGVRITTVAAGGRHTLALS 236
Query: 777 XXXXXXXXXXXXXXXXXXXXXXXSDIXXXXXXXXXXXXXXXXXSRIRMVSSPHLVPCFES 956
DI SRIRMVSSPH VPC +
Sbjct: 237 ------------------------DIGQVWGWGYGGEGQLGLGSRIRMVSSPHPVPCVDP 272
Query: 957 SSYGKDRSSGVARGSVISEGLVCKAPGNYVKGIACGGRHSALVTDAGAVVTFGWGLYGQC 1136
S YGKDR + +RG + SEG + PG+YVKGIACGGRHSA++TDAGA++TFGWGLYGQC
Sbjct: 273 S-YGKDRPAPFSRGGMTSEGHGFRVPGSYVKGIACGGRHSAVITDAGALLTFGWGLYGQC 331
Query: 1137 GQGSTDDELSPTCVSSLLGIQIEGVAAGLWHTVCISAEGDVYAFGGNQFGQLGTGTDQAE 1316
GQGSTDDELSP CVS LLGI+I GVAAGLWHT+C+SA+GDVYAFGGNQFGQLGTG+DQAE
Sbjct: 332 GQGSTDDELSPICVSPLLGIRIAGVAAGLWHTICVSADGDVYAFGGNQFGQLGTGSDQAE 391
Query: 1317 TLPRVLEAASMEDKHAKIVSCGARHTAVVTDDGNVFCWGWNKYGQLGLGDLXXXXXXXXX 1496
T PR+L+A S+ED HAK+VSCGARH+A+V +DG VFCWGWNKYGQL
Sbjct: 392 TTPRLLDAPSLEDIHAKVVSCGARHSAIVAEDGKVFCWGWNKYGQL-------------- 437
Query: 1497 XXXXXXXXXXXXQLGLGDLIDRNTPSQVPMDGHLSKNVACGWWHTLLLAESP 1652
GLGD+IDRN PS V ++G + +NVACGWWHTLLLAESP
Sbjct: 438 --------------GLGDVIDRNIPSPVTIEGCIPRNVACGWWHTLLLAESP 475
>ref|XP_003538429.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Glycine
max]
Length = 480
Score = 657 bits (1695), Expect = 0.0
Identities = 332/521 (63%), Positives = 385/521 (73%), Gaps = 4/521 (0%)
Frame = +3
Query: 105 ESSKLVMMCGYLPGVSPQRSPLITPVVVRLPEVYSDSWKDVSRGGCGFAMAISELGKLIT 284
E +LV M GYLPG PQR+PL+TPV+VR+P SWKDV GGCGFAMAISE GKLIT
Sbjct: 16 EKERLVYMWGYLPGALPQRTPLLTPVLVRVPPS-GYSWKDVCGGGCGFAMAISEPGKLIT 74
Query: 285 WGSTDDMGLSYVTSGKHGELPEPFPLPTEASIVKAAAGWAHCVAVTDAGEVYTWGWKECV 464
WGSTDD+G SYVTSGKHGE+PEPFPLPTE +IVKAAAGWAHCV+VTD GEVYTWGW+ECV
Sbjct: 75 WGSTDDLGQSYVTSGKHGEIPEPFPLPTEVTIVKAAAGWAHCVSVTDCGEVYTWGWRECV 134
Query: 465 PTGKMIGSQ----SMENDVLERNTSLLTEQVSPQSQVSKTSGSVSGFDSRGGAEENTKRR 632
P+GK+ G S E DV R +S LTEQVSP+SQ SK++G G S EE++KRR
Sbjct: 135 PSGKVFGESLTGVSPEKDVPGRQSSFLTEQVSPRSQGSKSTG---GTASGTSGEESSKRR 191
Query: 633 RISSAKHAPESSTSGDETQAALPCIVTLNPGVKIATVAAGGRHTLALSXXXXXXXXXXXX 812
R+SSAK E+S+S D+TQ ALPC+VTLNPGV+IA+VAAGGRHTLALS
Sbjct: 192 RVSSAKQTAETSSSSDDTQTALPCLVTLNPGVRIASVAAGGRHTLALS------------ 239
Query: 813 XXXXXXXXXXXSDIXXXXXXXXXXXXXXXXXSRIRMVSSPHLVPCFESSSYGKDRSSGVA 992
DI SRIRMVSSPHLVPC SSSYGKD S+ +A
Sbjct: 240 ------------DIGQVWGWGYGGEGQLGLGSRIRMVSSPHLVPCINSSSYGKDISASLA 287
Query: 993 RGSVISEGLVCKAPGNYVKGIACGGRHSALVTDAGAVVTFGWGLYGQCGQGSTDDELSPT 1172
RGS+ S+G + PG+Y+KGIACGGRHSA++TDAGAV+TFGWGLYGQCGQGSTDDELSP
Sbjct: 288 RGSMSSDGQNFRVPGSYIKGIACGGRHSAVITDAGAVLTFGWGLYGQCGQGSTDDELSPN 347
Query: 1173 CVSSLLGIQIEGVAAGLWHTVCISAEGDVYAFGGNQFGQLGTGTDQAETLPRVLEAASME 1352
CVSSLLGI+IEGVAAGLWHTVC SA+GDVYAFGGNQFGQLGTG DQAET+PR+L+ S+E
Sbjct: 348 CVSSLLGIRIEGVAAGLWHTVCTSADGDVYAFGGNQFGQLGTGGDQAETIPRLLDCPSLE 407
Query: 1353 DKHAKIVSCGARHTAVVTDDGNVFCWGWNKYGQLGLGDLXXXXXXXXXXXXXXXXXXXXX 1532
+ + K +SCGARHTA++TD+G VFCWGWNKYGQL
Sbjct: 408 NVNVKRISCGARHTALITDNGKVFCWGWNKYGQL-------------------------- 441
Query: 1533 QLGLGDLIDRNTPSQVPMDGHLSKNVACGWWHTLLLAESPT 1655
GLGD+IDRN PS+V ++G ++KNVACGWWHTLLLAE PT
Sbjct: 442 --GLGDVIDRNIPSEVTIEGCVAKNVACGWWHTLLLAEPPT 480
>ref|XP_003552762.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like isoform 1
[Glycine max]
Length = 472
Score = 644 bits (1660), Expect = 0.0
Identities = 328/521 (62%), Positives = 379/521 (72%), Gaps = 4/521 (0%)
Frame = +3
Query: 105 ESSKLVMMCGYLPGVSPQRSPLITPVVVRLPEVYSDSWKDVSRGGCGFAMAISELGKLIT 284
E LV M GYLPG PQR+PL+TP++VR+P WKDV GGCGFAMAISE GKLIT
Sbjct: 12 EKESLVYMWGYLPGALPQRTPLLTPLLVRVPPS-GYFWKDVCGGGCGFAMAISEPGKLIT 70
Query: 285 WGSTDDMGLSYVTSGKHGELPEPFPLPTEASIVKAAAGWAHCVAVTDAGEVYTWGWKECV 464
WGSTDD+G SYVTSGKHGE PEPFPLPTE +IVKAAAGWAHCV+VTD GEVYTWGW+ECV
Sbjct: 71 WGSTDDLGQSYVTSGKHGETPEPFPLPTEVTIVKAAAGWAHCVSVTDCGEVYTWGWRECV 130
Query: 465 PTGKMIGSQ----SMENDVLERNTSLLTEQVSPQSQVSKTSGSVSGFDSRGGAEENTKRR 632
P+GK+ G S E DV R +S LTEQVSP+SQ SK++G G S EE++KRR
Sbjct: 131 PSGKVFGESLTGVSPEKDVPRRQSSFLTEQVSPRSQGSKSTG---GTASGTSGEESSKRR 187
Query: 633 RISSAKHAPESSTSGDETQAALPCIVTLNPGVKIATVAAGGRHTLALSXXXXXXXXXXXX 812
R+SSAK E+S+S D+TQ ALPC+VTLNPGV+IA+VAAGGRHTLALS
Sbjct: 188 RVSSAKQTAETSSSSDDTQTALPCLVTLNPGVRIASVAAGGRHTLALS------------ 235
Query: 813 XXXXXXXXXXXSDIXXXXXXXXXXXXXXXXXSRIRMVSSPHLVPCFESSSYGKDRSSGVA 992
DI SRIRMVSSPHLVPC SSSYGKD +A
Sbjct: 236 ------------DIGQVWGWGYGGEGQLGLGSRIRMVSSPHLVPCINSSSYGKD----MA 279
Query: 993 RGSVISEGLVCKAPGNYVKGIACGGRHSALVTDAGAVVTFGWGLYGQCGQGSTDDELSPT 1172
R S+ S+G + PG+Y+KGIACGGRHSA++TDAGAV+TFGWGLYGQCGQGSTDDELSP+
Sbjct: 280 RVSISSDGQNFRVPGSYIKGIACGGRHSAVITDAGAVLTFGWGLYGQCGQGSTDDELSPS 339
Query: 1173 CVSSLLGIQIEGVAAGLWHTVCISAEGDVYAFGGNQFGQLGTGTDQAETLPRVLEAASME 1352
CVSSLLGIQIEGVAAGLWHTVC S +GDVYAFGGNQFGQLGTG DQAET+PR+L+ S+E
Sbjct: 340 CVSSLLGIQIEGVAAGLWHTVCTSVDGDVYAFGGNQFGQLGTGGDQAETIPRLLDCPSLE 399
Query: 1353 DKHAKIVSCGARHTAVVTDDGNVFCWGWNKYGQLGLGDLXXXXXXXXXXXXXXXXXXXXX 1532
+ + K +SCGARHTA++ D+G VFCWGWNKYGQL
Sbjct: 400 NVNVKRISCGARHTALIADNGKVFCWGWNKYGQL-------------------------- 433
Query: 1533 QLGLGDLIDRNTPSQVPMDGHLSKNVACGWWHTLLLAESPT 1655
GLGD+IDRN PS+V ++G ++KNVACGWWHTLLLAESPT
Sbjct: 434 --GLGDVIDRNIPSEVTIEGCVAKNVACGWWHTLLLAESPT 472
>ref|XP_003552763.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like isoform 2
[Glycine max]
Length = 459
Score = 622 bits (1605), Expect = e-176
Identities = 318/517 (61%), Positives = 370/517 (71%)
Frame = +3
Query: 105 ESSKLVMMCGYLPGVSPQRSPLITPVVVRLPEVYSDSWKDVSRGGCGFAMAISELGKLIT 284
E LV M GYLPG PQR+PL+TP++VR+P WKDV GGCGFAMAISE GKLIT
Sbjct: 12 EKESLVYMWGYLPGALPQRTPLLTPLLVRVPPS-GYFWKDVCGGGCGFAMAISEPGKLIT 70
Query: 285 WGSTDDMGLSYVTSGKHGELPEPFPLPTEASIVKAAAGWAHCVAVTDAGEVYTWGWKECV 464
WGSTDD+G SYVTSGKHGE PEPFPLPTE +IVKAAAGWAHCV+VTD GEVYTWGW+ECV
Sbjct: 71 WGSTDDLGQSYVTSGKHGETPEPFPLPTEVTIVKAAAGWAHCVSVTDCGEVYTWGWRECV 130
Query: 465 PTGKMIGSQSMENDVLERNTSLLTEQVSPQSQVSKTSGSVSGFDSRGGAEENTKRRRISS 644
P+GK+ G E T + E+ P+ Q SK++G G S EE++KRRR+SS
Sbjct: 131 PSGKVFG---------ESLTGVSPEKDVPRRQSSKSTG---GTASGTSGEESSKRRRVSS 178
Query: 645 AKHAPESSTSGDETQAALPCIVTLNPGVKIATVAAGGRHTLALSXXXXXXXXXXXXXXXX 824
AK E+S+S D+TQ ALPC+VTLNPGV+IA+VAAGGRHTLALS
Sbjct: 179 AKQTAETSSSSDDTQTALPCLVTLNPGVRIASVAAGGRHTLALS---------------- 222
Query: 825 XXXXXXXSDIXXXXXXXXXXXXXXXXXSRIRMVSSPHLVPCFESSSYGKDRSSGVARGSV 1004
DI SRIRMVSSPHLVPC SSSYGKD +AR S+
Sbjct: 223 --------DIGQVWGWGYGGEGQLGLGSRIRMVSSPHLVPCINSSSYGKD----MARVSI 270
Query: 1005 ISEGLVCKAPGNYVKGIACGGRHSALVTDAGAVVTFGWGLYGQCGQGSTDDELSPTCVSS 1184
S+G + PG+Y+KGIACGGRHSA++TDAGAV+TFGWGLYGQCGQGSTDDELSP+CVSS
Sbjct: 271 SSDGQNFRVPGSYIKGIACGGRHSAVITDAGAVLTFGWGLYGQCGQGSTDDELSPSCVSS 330
Query: 1185 LLGIQIEGVAAGLWHTVCISAEGDVYAFGGNQFGQLGTGTDQAETLPRVLEAASMEDKHA 1364
LLGIQIEGVAAGLWHTVC S +GDVYAFGGNQFGQLGTG DQAET+PR+L+ S+E+ +
Sbjct: 331 LLGIQIEGVAAGLWHTVCTSVDGDVYAFGGNQFGQLGTGGDQAETIPRLLDCPSLENVNV 390
Query: 1365 KIVSCGARHTAVVTDDGNVFCWGWNKYGQLGLGDLXXXXXXXXXXXXXXXXXXXXXQLGL 1544
K +SCGARHTA++ D+G VFCWGWNKYGQL GL
Sbjct: 391 KRISCGARHTALIADNGKVFCWGWNKYGQL----------------------------GL 422
Query: 1545 GDLIDRNTPSQVPMDGHLSKNVACGWWHTLLLAESPT 1655
GD+IDRN PS+V ++G ++KNVACGWWHTLLLAESPT
Sbjct: 423 GDVIDRNIPSEVTIEGCVAKNVACGWWHTLLLAESPT 459
>ref|XP_003600756.1| RCC1 and BTB domain-containing protein [Medicago truncatula]
gi|355489804|gb|AES71007.1| RCC1 and BTB
domain-containing protein [Medicago truncatula]
Length = 464
Score = 618 bits (1593), Expect = e-174
Identities = 317/528 (60%), Positives = 374/528 (70%), Gaps = 5/528 (0%)
Frame = +3
Query: 87 NSGKMKESSKLVMMCGYLPGVSPQRSPLITPVVVRLPEVYSD-SWKDVSRGGCGFAMAIS 263
N G + K+V M GYLPG PQR+PL+TPV+VR+P +WKDVS GGCGFAMAIS
Sbjct: 2 NGGGCEVKEKMVYMWGYLPGALPQRTPLLTPVLVRVPATSGGYNWKDVSGGGCGFAMAIS 61
Query: 264 ELGKLITWGSTDDMGLSYVTSGKHGELPEPFPLPTEASIVKAAAGWAHCVAVTDAGEVYT 443
E GKLITWGSTDD+G SYVTSGKHGE PEPF LP E SIVKAA+ WAHCVA TD GEVYT
Sbjct: 62 ESGKLITWGSTDDLGQSYVTSGKHGETPEPFSLPNEVSIVKAASAWAHCVAATDCGEVYT 121
Query: 444 WGWKECVPTGKMIGSQSM----ENDVLERNTSLLTEQVSPQSQVSKTSGSVSGFDSRGGA 611
WGWKEC+P+GK+ G S E D + +S LTEQVS +SQVSK++G G S G
Sbjct: 122 WGWKECIPSGKVFGETSQGVSPEKDAQGKPSSFLTEQVSSRSQVSKSTG---GTVSSG-- 176
Query: 612 EENTKRRRISSAKHAPESSTSGDETQAALPCIVTLNPGVKIATVAAGGRHTLALSXXXXX 791
EE++KRR++SSAK A ++S+SGD+ A+PC+VTLNPGVKI +VAAGGRHTL LS
Sbjct: 177 EESSKRRKVSSAKQAAQTSSSGDDILTAMPCLVTLNPGVKITSVAAGGRHTLVLS----- 231
Query: 792 XXXXXXXXXXXXXXXXXXSDIXXXXXXXXXXXXXXXXXSRIRMVSSPHLVPCFESSSYGK 971
DI SR+RMVSSPH++PC +SSS
Sbjct: 232 -------------------DIGQVWGWGYGGEGQLGLGSRVRMVSSPHIIPCIDSSS--- 269
Query: 972 DRSSGVARGSVISEGLVCKAPGNYVKGIACGGRHSALVTDAGAVVTFGWGLYGQCGQGST 1151
+ +GS+ SEG + PG+ +K IACGGRHSA++TDAGAV+ FGWGLYGQCGQGST
Sbjct: 270 -----LVQGSMSSEGHNFRIPGSCIKAIACGGRHSAVITDAGAVLAFGWGLYGQCGQGST 324
Query: 1152 DDELSPTCVSSLLGIQIEGVAAGLWHTVCISAEGDVYAFGGNQFGQLGTGTDQAETLPRV 1331
DDELSPTCVSSLLGIQIEGVAAGLWHTVC SA+GDVYAFGGNQFGQLGTG+DQAETLPR+
Sbjct: 325 DDELSPTCVSSLLGIQIEGVAAGLWHTVCTSADGDVYAFGGNQFGQLGTGSDQAETLPRL 384
Query: 1332 LEAASMEDKHAKIVSCGARHTAVVTDDGNVFCWGWNKYGQLGLGDLXXXXXXXXXXXXXX 1511
L+ S+E+ + K +SCGARHTA+VTD+G VF WGWNKYGQL
Sbjct: 385 LDCPSLENVNVKTISCGARHTALVTDNGKVFSWGWNKYGQL------------------- 425
Query: 1512 XXXXXXXQLGLGDLIDRNTPSQVPMDGHLSKNVACGWWHTLLLAESPT 1655
GLGD+IDRN PS+V ++G ++KNVACGWWHTLLLAESPT
Sbjct: 426 ---------GLGDVIDRNIPSEVAIEGCIAKNVACGWWHTLLLAESPT 464