BLASTX nr result

ID: Coptis23_contig00004260 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00004260
         (271 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_001233810.1| TCP transcription factor 15 [Solanum lycoper...    69   3e-10
ref|XP_003592726.1| Transcription factor PCF2 [Medicago truncatu...    64   2e-08
ref|XP_002268058.1| PREDICTED: transcription factor TCP7-like [V...    62   5e-08
ref|XP_002872048.1| hypothetical protein ARALYDRAFT_489189 [Arab...    61   1e-07
ref|XP_003536737.1| PREDICTED: transcription factor TCP7-like [G...    60   2e-07

>ref|NP_001233810.1| TCP transcription factor 15 [Solanum lycopersicum]
           gi|306416841|gb|ADM87264.1| TCP transcription factor 15
           [Solanum lycopersicum]
          Length = 249

 Score = 69.3 bits (168), Expect = 3e-10
 Identities = 40/87 (45%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
 Frame = +2

Query: 11  STPSLSASLDHK-PSPHNSIISPXXXXXXXXXXXSMLGPTPFLLGKRLRSDDDSDEXXXX 187
           S+ + SA +DHK PSP  S++ P            ++ P PFLLGKRLRS+DD +     
Sbjct: 113 SSVTASAPVDHKLPSPSPSLLHP------------LISPAPFLLGKRLRSEDDDN--GSG 158

Query: 188 XXXXXXXXXFWALPARADFGQVWSFAA 268
                    FWA+PAR DFGQVWSFAA
Sbjct: 159 DKDVVPSAGFWAVPARPDFGQVWSFAA 185


>ref|XP_003592726.1| Transcription factor PCF2 [Medicago truncatula]
           gi|355481774|gb|AES62977.1| Transcription factor PCF2
           [Medicago truncatula]
          Length = 257

 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 39/94 (41%), Positives = 48/94 (51%), Gaps = 6/94 (6%)
 Frame = +2

Query: 5   TSSTPSLSA-SLDHKPSPHNSIISPXXXXXXXXXXXSMLGPTPFLLGKRLRSDDDSD--- 172
           ++S PS S+ SLDHKP                     +L PTPF+LGKR+R+DDDS    
Sbjct: 108 SNSLPSPSSTSLDHKP---------------------LLSPTPFILGKRIRTDDDSSSSS 146

Query: 173 --EXXXXXXXXXXXXXFWALPARADFGQVWSFAA 268
             +              WALPAR DFGQ+WSFAA
Sbjct: 147 AKDDALSVGSLSTPAALWALPARPDFGQIWSFAA 180


>ref|XP_002268058.1| PREDICTED: transcription factor TCP7-like [Vitis vinifera]
          Length = 255

 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 38/87 (43%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
 Frame = +2

Query: 26  SASLDHKPSPHNSIISPXXXXXXXXXXXSMLGPTPFLLGKRLRSDDDSDEXXXXXXXXXX 205
           SA+LD KPS                    +L PTPF+LGKRLR DDD D           
Sbjct: 116 SAALDQKPSQ------------------PLLSPTPFILGKRLRGDDDVDGGAKDEVVAAA 157

Query: 206 XXX------FWALPARADFGQVWSFAA 268
                    FWA+PAR DFGQVWSFAA
Sbjct: 158 AAAAAAAGGFWAVPARPDFGQVWSFAA 184


>ref|XP_002872048.1| hypothetical protein ARALYDRAFT_489189 [Arabidopsis lyrata subsp.
           lyrata] gi|297317885|gb|EFH48307.1| hypothetical protein
           ARALYDRAFT_489189 [Arabidopsis lyrata subsp. lyrata]
          Length = 243

 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 37/91 (40%), Positives = 50/91 (54%), Gaps = 4/91 (4%)
 Frame = +2

Query: 2   RTSSTPSLSASLDHKPSPHNSIISPXXXXXXXXXXXSMLG-PTPFLLGKRLRSDDDSDEX 178
           R +S+ SLS+SLDHKP+                   S+LG  +PF+LGKR+R+D+D++  
Sbjct: 106 RGTSSTSLSSSLDHKPT-------------------SLLGGSSPFILGKRVRADEDNNNH 146

Query: 179 XXXXXXXXXXXX---FWALPARADFGQVWSF 262
                          FWA+PAR DFGQVWSF
Sbjct: 147 NSGGKDETFTTTPAGFWAVPARPDFGQVWSF 177


>ref|XP_003536737.1| PREDICTED: transcription factor TCP7-like [Glycine max]
          Length = 246

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 35/92 (38%), Positives = 45/92 (48%), Gaps = 5/92 (5%)
 Frame = +2

Query: 8   SSTPSLSASLDHKPSPHNSIISPXXXXXXXXXXXSMLGPTPFLLGKRLRSDDDSDEXXXX 187
           +S  S S++ DHKP                     +L PTPF+LGKR+R+D+DS +    
Sbjct: 108 NSLSSPSSTSDHKPQ--------------------LLSPTPFILGKRIRTDEDSSKDEAV 147

Query: 188 XXXXXXXXX-----FWALPARADFGQVWSFAA 268
                          WALPAR DFGQ+WSFAA
Sbjct: 148 SVGPSLVGPSTPPGLWALPARPDFGQIWSFAA 179


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