BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00004254
         (1337 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002275285.1| PREDICTED: TATA-binding protein-associated f...   473   e-131
ref|XP_003633864.1| PREDICTED: TATA-binding protein-associated f...   465   e-128
ref|XP_002523964.1| TATA-binding protein-associated factor MOT1,...   462   e-128
ref|XP_003633863.1| PREDICTED: TATA-binding protein-associated f...   454   e-125
ref|XP_002319739.1| chromatin remodeling complex subunit [Populu...   437   e-120

>ref|XP_002275285.1| PREDICTED: TATA-binding protein-associated factor 172 isoform 1
            [Vitis vinifera]
          Length = 2052

 Score =  473 bits (1216), Expect = e-131
 Identities = 243/393 (61%), Positives = 299/393 (76%)
 Frame = -2

Query: 1183 MAQQSSRLHRLLTLLDTGSTQATRFEAANQIGAIAKAHPQDLSSFLKKVSVYLRSKNWDT 1004
            M+ QSSRLHRLLTLLDTGSTQATR  AA QIG IAK+HPQDL+S L+KVS YLRSKNWDT
Sbjct: 1    MSHQSSRLHRLLTLLDTGSTQATRLTAARQIGDIAKSHPQDLNSLLRKVSQYLRSKNWDT 60

Query: 1003 RVXXXXXXXXXAQNVVHTSLQELFASVEAELSAAGISGNGEDVIMSWTNSHPDFVSGLSF 824
            RV         A+NV H+SL ELFA V   +S AGISG  EDV+ +W + HP  ++G  F
Sbjct: 61   RVAAAHAIGAIAENVKHSSLSELFACVGKRMSEAGISGEVEDVV-AWPDYHPKIMAGSPF 119

Query: 823  RSFDLSKVLEFGALLASGGQEYDVASDGSKTPGERLARQKQNLRRRLGLDVCEQFMDVND 644
            RSFD++KVLEFGALLASGGQEYD+ASD +K P +RLARQKQNLRRRLGLD+CEQFMDVND
Sbjct: 120  RSFDINKVLEFGALLASGGQEYDIASDNTKNPRDRLARQKQNLRRRLGLDMCEQFMDVND 179

Query: 643  VIKDEDLLVNKFSSHENGVGHRSYIFQHGNQIQQLVANIVPTFLSKRPSARELNLLKRKA 464
            +I+DEDL+V+KF+   NG+ +R    Q  + IQ+LVAN+VPT +SKRPSARELNLLKRKA
Sbjct: 180  MIRDEDLIVHKFNPQGNGIDNRFNNSQSVHSIQRLVANMVPTIISKRPSARELNLLKRKA 239

Query: 463  KINAKDQTKSWCDAAESEAPHSQSLVLPKVTCPDPISSNKXXXXXXXXXXXXXXDGEGQW 284
            KIN+KDQTK W +  ++    ++ L  PK +CP+ + S+K              DG+G+W
Sbjct: 240  KINSKDQTKGWSEDGDT----AEVLTTPKESCPESLHSDKVFMDPIVDEDNFDHDGDGRW 295

Query: 283  PFQNFVEQLILDMFDPNWEVRHGSMMALREIITHHGGSSGVFTPDLSSESAHSDKTEVKQ 104
            PF +FVEQL+LDMFDP WE+RHGS+MALREI+TH G S+GV  PDLSS +A   + + K 
Sbjct: 296  PFHSFVEQLLLDMFDPVWEIRHGSVMALREILTHQGASAGVLMPDLSSGAASFIELKEKD 355

Query: 103  ELTTLKRKMELDLNVQVPGEETEPNWKKLKSED 5
               TLKR+ E+DLN+QVP +E+EPN K+LKSED
Sbjct: 356  NSNTLKREREIDLNMQVPADESEPNLKRLKSED 388


>ref|XP_003633864.1| PREDICTED: TATA-binding protein-associated factor 172 isoform 3
            [Vitis vinifera]
          Length = 2060

 Score =  465 bits (1197), Expect = e-128
 Identities = 243/401 (60%), Positives = 299/401 (74%), Gaps = 8/401 (1%)
 Frame = -2

Query: 1183 MAQQSSRLHRLLTLLDTGSTQATRFEAANQIGAIAKAHPQDLSSFLKKVSVYLRSKNWDT 1004
            M+ QSSRLHRLLTLLDTGSTQATR  AA QIG IAK+HPQDL+S L+KVS YLRSKNWDT
Sbjct: 1    MSHQSSRLHRLLTLLDTGSTQATRLTAARQIGDIAKSHPQDLNSLLRKVSQYLRSKNWDT 60

Query: 1003 RVXXXXXXXXXAQNVVHTSLQELFASVEAELSAAGISGNGEDVIMSWTNSHPDFVSGLSF 824
            RV         A+NV H+SL ELFA V   +S AGISG  EDV+ +W + HP  ++G  F
Sbjct: 61   RVAAAHAIGAIAENVKHSSLSELFACVGKRMSEAGISGEVEDVV-AWPDYHPKIMAGSPF 119

Query: 823  RSFDLSKVLEFGALLASGGQEYDVASDGSKTPGERLARQKQNLRRRLGLDVCEQFMDVND 644
            RSFD++KVLEFGALLASGGQEYD+ASD +K P +RLARQKQNLRRRLGLD+CEQFMDVND
Sbjct: 120  RSFDINKVLEFGALLASGGQEYDIASDNTKNPRDRLARQKQNLRRRLGLDMCEQFMDVND 179

Query: 643  VIKDEDLLVNKFSSHENGVGHRSYIFQHGNQIQQLVANIVPTFLSKRPSARELNLLKRKA 464
            +I+DEDL+V+KF+   NG+ +R    Q  + IQ+LVAN+VPT +SKRPSARELNLLKRKA
Sbjct: 180  MIRDEDLIVHKFNPQGNGIDNRFNNSQSVHSIQRLVANMVPTIISKRPSARELNLLKRKA 239

Query: 463  KINAKDQTKSWCDAAESEAPHSQSLVLPKVTCPDPISSNK--------XXXXXXXXXXXX 308
            KIN+KDQTK W +  ++    ++ L  PK +CP+ + S+K                    
Sbjct: 240  KINSKDQTKGWSEDGDT----AEVLTTPKESCPESLHSDKVFDSYSLQVFMDPIVDEDNF 295

Query: 307  XXDGEGQWPFQNFVEQLILDMFDPNWEVRHGSMMALREIITHHGGSSGVFTPDLSSESAH 128
              DG+G+WPF +FVEQL+LDMFDP WE+RHGS+MALREI+TH G S+GV  PDLSS +A 
Sbjct: 296  DHDGDGRWPFHSFVEQLLLDMFDPVWEIRHGSVMALREILTHQGASAGVLMPDLSSGAAS 355

Query: 127  SDKTEVKQELTTLKRKMELDLNVQVPGEETEPNWKKLKSED 5
              + + K    TLKR+ E+DLN+QVP +E+EPN K+LKSED
Sbjct: 356  FIELKEKDNSNTLKREREIDLNMQVPADESEPNLKRLKSED 396


>ref|XP_002523964.1| TATA-binding protein-associated factor MOT1, putative [Ricinus
            communis] gi|223536691|gb|EEF38332.1| TATA-binding
            protein-associated factor MOT1, putative [Ricinus
            communis]
          Length = 1920

 Score =  462 bits (1190), Expect = e-128
 Identities = 252/393 (64%), Positives = 298/393 (75%)
 Frame = -2

Query: 1183 MAQQSSRLHRLLTLLDTGSTQATRFEAANQIGAIAKAHPQDLSSFLKKVSVYLRSKNWDT 1004
            MAQQSSRLHRLLTLLDTGSTQATRF AA QIG IAK+HPQDLSS LKKVS YLRSKNWDT
Sbjct: 1    MAQQSSRLHRLLTLLDTGSTQATRFTAARQIGDIAKSHPQDLSSLLKKVSQYLRSKNWDT 60

Query: 1003 RVXXXXXXXXXAQNVVHTSLQELFASVEAELSAAGISGNGEDVIMSWTNSHPDFVSGLSF 824
            RV         AQNV HTSL ELFASVEA++S  G+SG  ED++ +W +     +S  SF
Sbjct: 61   RVAAAHAIGAIAQNVKHTSLAELFASVEAKMSEVGMSGVVEDLV-AWPDFLSKIISSGSF 119

Query: 823  RSFDLSKVLEFGALLASGGQEYDVASDGSKTPGERLARQKQNLRRRLGLDVCEQFMDVND 644
            RSF+++KVLEFGALLAS GQEYD+A+D SK P ERLARQKQNLRRRLGLDVCEQFMDVND
Sbjct: 120  RSFEINKVLEFGALLASRGQEYDIANDNSKNPRERLARQKQNLRRRLGLDVCEQFMDVND 179

Query: 643  VIKDEDLLVNKFSSHENGVGHRSYIFQHGNQIQQLVANIVPTFLSKRPSARELNLLKRKA 464
            VIKDEDLLV K  S  NG+G+R Y+    + IQQLVA++VPT +S+RPSARELNLLKRKA
Sbjct: 180  VIKDEDLLVQKLHSQGNGLGNRFYMPPSVHNIQQLVASMVPTVVSRRPSARELNLLKRKA 239

Query: 463  KINAKDQTKSWCDAAESEAPHSQSLVLPKVTCPDPISSNKXXXXXXXXXXXXXXDGEGQW 284
            KIN+KDQTK W +  ++E   SQS   PK +  D  +S+K              DG+G+W
Sbjct: 240  KINSKDQTKGWSEDGDAEMSFSQS-TTPKASNQDSFNSSK----VDADEDSFEHDGDGKW 294

Query: 283  PFQNFVEQLILDMFDPNWEVRHGSMMALREIITHHGGSSGVFTPDLSSESAHSDKTEVKQ 104
            PF+ FVEQL+LDMFDP WEVRHGS+MALREI+THHGGS+GVF PDLS + A  D+ +   
Sbjct: 295  PFRGFVEQLMLDMFDPVWEVRHGSVMALREILTHHGGSAGVFMPDLSLDGA-LDELKYLD 353

Query: 103  ELTTLKRKMELDLNVQVPGEETEPNWKKLKSED 5
              +TLKR+ E DLN+QV  +E EP+ K+ K E+
Sbjct: 354  YSSTLKREREFDLNMQVSIDELEPHLKRPKFEE 386


>ref|XP_003633863.1| PREDICTED: TATA-binding protein-associated factor 172 isoform 2
            [Vitis vinifera]
          Length = 2089

 Score =  454 bits (1168), Expect = e-125
 Identities = 243/430 (56%), Positives = 299/430 (69%), Gaps = 37/430 (8%)
 Frame = -2

Query: 1183 MAQQSSRLHRLLTLLDTGSTQATRFEAANQIGAIAKAHPQDLSSFLKKVSVYLRSKNWDT 1004
            M+ QSSRLHRLLTLLDTGSTQATR  AA QIG IAK+HPQDL+S L+KVS YLRSKNWDT
Sbjct: 1    MSHQSSRLHRLLTLLDTGSTQATRLTAARQIGDIAKSHPQDLNSLLRKVSQYLRSKNWDT 60

Query: 1003 RVXXXXXXXXXAQNVVHTSLQELFASVEAELSAAGISGNGEDVIMSWTNSHPDFVSGLSF 824
            RV         A+NV H+SL ELFA V   +S AGISG  EDV+ +W + HP  ++G  F
Sbjct: 61   RVAAAHAIGAIAENVKHSSLSELFACVGKRMSEAGISGEVEDVV-AWPDYHPKIMAGSPF 119

Query: 823  RSFDLSKVLEFGALLASGGQ-------------------------------------EYD 755
            RSFD++KVLEFGALLASGGQ                                     EYD
Sbjct: 120  RSFDINKVLEFGALLASGGQVMLFFFLTKALECQSIWVQPRKCFPEIKLWSLEKFYIEYD 179

Query: 754  VASDGSKTPGERLARQKQNLRRRLGLDVCEQFMDVNDVIKDEDLLVNKFSSHENGVGHRS 575
            +ASD +K P +RLARQKQNLRRRLGLD+CEQFMDVND+I+DEDL+V+KF+   NG+ +R 
Sbjct: 180  IASDNTKNPRDRLARQKQNLRRRLGLDMCEQFMDVNDMIRDEDLIVHKFNPQGNGIDNRF 239

Query: 574  YIFQHGNQIQQLVANIVPTFLSKRPSARELNLLKRKAKINAKDQTKSWCDAAESEAPHSQ 395
               Q  + IQ+LVAN+VPT +SKRPSARELNLLKRKAKIN+KDQTK W +  ++    ++
Sbjct: 240  NNSQSVHSIQRLVANMVPTIISKRPSARELNLLKRKAKINSKDQTKGWSEDGDT----AE 295

Query: 394  SLVLPKVTCPDPISSNKXXXXXXXXXXXXXXDGEGQWPFQNFVEQLILDMFDPNWEVRHG 215
             L  PK +CP+ + S+K              DG+G+WPF +FVEQL+LDMFDP WE+RHG
Sbjct: 296  VLTTPKESCPESLHSDKVFMDPIVDEDNFDHDGDGRWPFHSFVEQLLLDMFDPVWEIRHG 355

Query: 214  SMMALREIITHHGGSSGVFTPDLSSESAHSDKTEVKQELTTLKRKMELDLNVQVPGEETE 35
            S+MALREI+TH G S+GV  PDLSS +A   + + K    TLKR+ E+DLN+QVP +E+E
Sbjct: 356  SVMALREILTHQGASAGVLMPDLSSGAASFIELKEKDNSNTLKREREIDLNMQVPADESE 415

Query: 34   PNWKKLKSED 5
            PN K+LKSED
Sbjct: 416  PNLKRLKSED 425


>ref|XP_002319739.1| chromatin remodeling complex subunit [Populus trichocarpa]
            gi|222858115|gb|EEE95662.1| chromatin remodeling complex
            subunit [Populus trichocarpa]
          Length = 2045

 Score =  437 bits (1125), Expect = e-120
 Identities = 238/395 (60%), Positives = 283/395 (71%), Gaps = 4/395 (1%)
 Frame = -2

Query: 1177 QQSSRLHRLLTLLDTGSTQATRFEAANQIGAIAKAHPQDLSSFLKKVSVYLRSKNWDTRV 998
            QQSSRL+RLLTLLDTGSTQATR  AA QIG IAK+HPQDL S LKKVS  L SKNWDTRV
Sbjct: 4    QQSSRLNRLLTLLDTGSTQATRLTAAKQIGDIAKSHPQDLHSLLKKVSQNLHSKNWDTRV 63

Query: 997  XXXXXXXXXAQNVVHTSLQELFASVEAELSAAGISGNGEDVIMSWTNSHPDFVSGLSFRS 818
                     AQNV HTSL ELFASVE ++S  G+SG+ ED++ +  N H   +S   FRS
Sbjct: 64   AAAHAIGAIAQNVKHTSLTELFASVETKMSEIGVSGHVEDLV-ACPNFHSQIISNGLFRS 122

Query: 817  FDLSKVLEFGALLASGGQEYDVASDGSKTPGERLARQKQNLRRRLGLDVCEQFMDVNDVI 638
            FD++KVLEFGALLASGGQEYD+A+D SK P ERLARQKQNLRRRLGLDVCEQFMDVNDVI
Sbjct: 123  FDMNKVLEFGALLASGGQEYDIANDNSKNPRERLARQKQNLRRRLGLDVCEQFMDVNDVI 182

Query: 637  KDEDLLVNKFSSHENGVGHRSYIFQHGNQIQQLVANIVPTFLSKRPSARELNLLKRKAKI 458
            KDEDL+V++  S  NG+ HR Y     + IQQLVA++VP+ +SKRPSARELNLLKRKAKI
Sbjct: 183  KDEDLVVHRPESQRNGLDHRFYKHPSVHNIQQLVASMVPSVISKRPSARELNLLKRKAKI 242

Query: 457  NAKDQTKSWCDAAESEAPHSQSLVLPKVTCPDP----ISSNKXXXXXXXXXXXXXXDGEG 290
            N+KDQ KSW +  ++E           V CP      +                  DG+G
Sbjct: 243  NSKDQVKSWSEDGDTE-----------VACPQKTERVLDDQALKTADADEEDNLEHDGDG 291

Query: 289  QWPFQNFVEQLILDMFDPNWEVRHGSMMALREIITHHGGSSGVFTPDLSSESAHSDKTEV 110
            +WPF  FVEQLI+DMFDP WEVRHGS+MALREI+THHGGS+G+  PDLS + A  D+   
Sbjct: 292  RWPFHGFVEQLIVDMFDPVWEVRHGSVMALREIVTHHGGSAGLVVPDLSLDGA-LDELRE 350

Query: 109  KQELTTLKRKMELDLNVQVPGEETEPNWKKLKSED 5
            ++    +KR+ E+DLN+QV  +E EPN K+ KSED
Sbjct: 351  REYSNAIKREREIDLNLQVLTDEFEPNPKRHKSED 385